Strain Fitness in Sphingobium sp. HT1-2 around GFF3228

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,282,892	+		GFF3227	0.27	-1.0
3,282,931	+		GFF3227	0.30	-0.0
3,283,049	+		GFF3227	0.39	+0.5
3,283,049	-		GFF3227	0.39	+0.2
3,283,054	+		GFF3227	0.39	-1.2
3,283,067	-		GFF3227	0.40	-0.8
3,283,069	+		GFF3227	0.40	-1.5
3,283,077	+		GFF3227	0.41	+0.2
3,283,077	-		GFF3227	0.41	-0.9
3,283,085	-		GFF3227	0.42	+1.3
3,283,094	-		GFF3227	0.42	-0.9
3,283,096	+		GFF3227	0.42	-1.8
3,283,096	+		GFF3227	0.42	-1.1
3,283,096	+		GFF3227	0.42	-1.7
3,283,156	+		GFF3227	0.47	+0.2
3,283,158	+		GFF3227	0.47	-0.7
3,283,158	+		GFF3227	0.47	-0.6
3,283,158	+		GFF3227	0.47	-1.5
3,283,158	+		GFF3227	0.47	-0.2
3,283,158	+		GFF3227	0.47	+0.3
3,283,158	+		GFF3227	0.47	+1.2
3,283,158	+		GFF3227	0.47	-1.8
3,283,158	+		GFF3227	0.47	-0.4
3,283,158	+		GFF3227	0.47	+0.6
3,283,158	+		GFF3227	0.47	+1.1
3,283,158	+		GFF3227	0.47	+0.5
3,283,163	+		GFF3227	0.47	+1.2
3,283,166	-		GFF3227	0.48	-0.3
3,283,166	-		GFF3227	0.48	-0.3
3,283,184	+		GFF3227	0.49	+0.0
3,283,199	-		GFF3227	0.50	-0.8
3,283,244	-		GFF3227	0.53	-1.5
3,283,271	-		GFF3227	0.56	+0.2
3,283,326	-		GFF3227	0.60	-2.5
3,283,346	-		GFF3227	0.61	+0.6
3,283,351	+		GFF3227	0.61	-1.9
3,283,359	-		GFF3227	0.62	+0.3
3,283,424	-		GFF3227	0.67	-0.9
3,283,438	-		GFF3227	0.68	-0.8
3,283,446	-		GFF3227	0.69	+0.3
3,283,606	+		GFF3227	0.81	-1.3
3,283,620	-		GFF3227	0.82	+1.0
3,283,630	+		GFF3227	0.82	-0.9
3,283,735	+				-1.1
3,283,828	+				-0.5
3,283,841	-				-1.5
3,283,841	-				+0.6
3,283,843	+				+0.2
3,283,858	+				+1.3
3,283,859	+				-1.3
3,283,861	-				-0.3
3,283,866	+				-0.8
3,283,866	+				+1.4
3,283,866	+				-0.2
3,283,866	+				+1.0
3,283,866	+				-2.2
3,283,866	-				-1.5
3,283,873	-				-0.7
3,283,874	-				-0.3
3,283,874	-				+1.4
3,283,874	-				-0.4
3,283,874	-				-0.7
3,283,896	+				-0.2
3,283,903	+				-0.2
3,283,904	-				-0.1
3,283,916	+				-0.8
3,283,929	+				-0.7
3,283,930	-				-0.2
3,283,937	-				-0.0
3,283,948	-		GFF3228	0.10	+0.6
3,283,950	+		GFF3228	0.10	+0.2
3,283,950	+		GFF3228	0.10	+0.5
3,283,958	+		GFF3228	0.11	+1.3
3,283,960	+		GFF3228	0.11	+0.2
3,283,961	+		GFF3228	0.12	+0.4
3,284,007	-		GFF3228	0.17	-1.3
3,284,089	+		GFF3228	0.26	-0.6
3,284,120	+		GFF3228	0.30	-1.8
3,284,220	+		GFF3228	0.41	+0.1
3,284,222	+		GFF3228	0.42	+0.5
3,284,232	+		GFF3228	0.43	-0.6
3,284,239	+		GFF3228	0.44	-0.8
3,284,256	+		GFF3228	0.46	+0.3
3,284,261	+		GFF3228	0.46	-0.2
3,284,261	+		GFF3228	0.46	+1.2
3,284,264	-		GFF3228	0.46	-0.4
3,284,264	-		GFF3228	0.46	+0.3
3,284,269	-		GFF3228	0.47	-0.8
3,284,315	+		GFF3228	0.52	-1.1
3,284,323	-		GFF3228	0.53	+0.3
3,284,328	-		GFF3228	0.54	-0.3
3,284,353	+		GFF3228	0.57	-0.1
3,284,370	+		GFF3228	0.59	-0.7
3,284,438	-		GFF3228	0.67	-0.2
3,284,438	-		GFF3228	0.67	-1.8
3,284,443	-		GFF3228	0.67	-0.3
3,284,454	+		GFF3228	0.68	+1.2
3,284,454	+		GFF3228	0.68	+0.6
3,284,463	+		GFF3228	0.69	-0.4
3,284,463	-		GFF3228	0.69	+0.9
3,284,464	-		GFF3228	0.70	+0.9
3,284,475	+		GFF3228	0.71	-0.8
3,284,483	+		GFF3228	0.72	+0.2
3,284,511	+		GFF3228	0.75	+0.3
3,284,521	-		GFF3228	0.76	+0.5
3,284,581	+		GFF3228	0.83	-0.8
3,284,581	+		GFF3228	0.83	+0.8
3,284,594	+		GFF3228	0.85	+1.2
3,284,594	+		GFF3228	0.85	+1.3
3,284,594	+		GFF3228	0.85	+0.5
3,284,594	+		GFF3228	0.85	-0.9
3,284,602	-		GFF3228	0.85	-1.8
3,284,602	-		GFF3228	0.85	-1.7
3,284,602	-		GFF3228	0.85	-0.2
3,284,621	-		GFF3228	0.88	-2.2
3,284,621	-		GFF3228	0.88	+0.2
3,284,621	-		GFF3228	0.88	+1.3
3,284,683	-				-1.3
3,284,685	+				-0.8
3,284,687	+				-1.7
3,284,688	-				+1.2
3,284,692	+				-1.5
3,284,693	-				+0.3
3,284,693	-				-0.4
3,284,741	-				-0.7
3,284,758	+				-3.1
3,284,767	-				+0.2
3,284,810	-		GFF3229	0.20	+0.7
3,284,811	+		GFF3229	0.20	+0.1
3,284,825	-		GFF3229	0.25	+0.3
3,284,826	+		GFF3229	0.25	+0.2
3,284,826	+		GFF3229	0.25	-0.6
3,284,826	+		GFF3229	0.25	-1.3
3,284,826	+		GFF3229	0.25	+1.4
3,284,826	+		GFF3229	0.25	-0.0
3,284,834	-		GFF3229	0.28	+0.3
3,284,834	-		GFF3229	0.28	+1.1
3,284,834	-		GFF3229	0.28	+0.9
3,284,834	-		GFF3229	0.28	+0.3
3,284,886	+		GFF3229	0.46	+0.2
3,284,891	+		GFF3229	0.48	-0.2
3,284,891	+		GFF3229	0.48	-0.2
3,284,891	+		GFF3229	0.48	+0.0
3,284,894	-		GFF3229	0.49	-0.2
3,284,901	+		GFF3229	0.52	-0.8
3,284,901	+		GFF3229	0.52	+0.1
3,284,906	+		GFF3229	0.54	+0.5
3,284,909	-		GFF3229	0.55	-1.3
3,284,909	-		GFF3229	0.55	+0.2
3,284,909	-		GFF3229	0.55	-0.9
3,284,909	-		GFF3229	0.55	+2.0
3,284,926	+		GFF3229	0.61	-0.0
3,284,951	+		GFF3229	0.70	+0.1
3,284,964	+		GFF3229	0.74	+0.1
3,284,969	+		GFF3229	0.76	-1.7
3,284,977	+		GFF3229	0.79	+0.6
3,284,985	-		GFF3229	0.82	+0.1
3,284,993	+		GFF3229	0.84	+0.1
3,285,007	-		GFF3229	0.89	-0.2
3,285,007	-		GFF3229	0.89	+0.9
3,285,007	-		GFF3229	0.89	-0.9
3,285,013	+				+0.2
3,285,013	+				+0.0
3,285,013	+				-0.2
3,285,013	+				+0.3
3,285,021	-				-1.4
3,285,021	-				+1.5
3,285,021	-				+0.2
3,285,026	-				-1.2
3,285,036	+				-1.1
3,285,046	+				-1.3
3,285,046	+				-1.0
3,285,061	-				+1.5
3,285,061	-				-0.4
3,285,061	-				-1.7
3,285,061	-				+0.1
3,285,063	+				-0.8
3,285,071	-				-0.2
3,285,074	+				-0.2
3,285,087	+				+0.9
3,285,137	+				+0.2
3,285,177	+				-0.1
3,285,231	+				+0.5
3,285,294	+				-0.8
3,285,306	+				+0.3
3,285,306	+				-1.7
3,285,311	+				-0.7
3,285,311	+				-0.7
3,285,311	-				-0.6
3,285,314	-				-0.0
3,285,314	-				+0.6
3,285,350	+				-2.1
3,285,353	+				+0.2
3,285,353	+				+0.7
3,285,386	+				-0.2
3,285,396	+				+0.4
3,285,412	+				+0.8
3,285,412	+				-0.0
3,285,420	-				-0.7
3,285,420	-				-0.7
3,285,420	-				-0.7
3,285,427	-				-0.7
3,285,447	+				-0.2
3,285,461	-				-0.1
3,285,501	+				-1.7
3,285,510	+				-1.3
3,285,514	+				+0.3
3,285,518	-				+0.2
3,285,522	-				+1.4
3,285,536	-				+0.9
3,285,542	+				-0.1
3,285,545	-				-0.6
3,285,564	-				-0.4
3,285,566	+				+0.2
3,285,566	+				+0.7
3,285,566	+				-1.0
3,285,571	+				-0.7
3,285,574	-				-1.7
3,285,576	+				-0.9
3,285,576	+				-1.5
3,285,576	+				-0.8
3,285,576	+				+1.2
3,285,576	+				+0.7
3,285,576	+				-0.4
3,285,576	+				+0.4
3,285,576	+				-1.8
3,285,576	+				+0.5
3,285,576	+				-0.4
3,285,576	+				-0.4
3,285,576	+				+0.3
3,285,576	+				-1.8
3,285,576	+				+0.2
3,285,576	+				+0.6
3,285,579	-				-1.9
3,285,584	-				-0.5
3,285,584	-				-0.4
3,285,584	-				-0.4
3,285,584	-				+0.8
3,285,584	-				-0.2
3,285,584	-				-0.4
3,285,584	-				-1.5
3,285,584	-				-0.3
3,285,584	-				-1.7
3,285,584	-				-0.0
3,285,584	-				-0.4
3,285,587	+				+0.6
3,285,602	-				-0.7
3,285,602	-				-1.4
3,285,616	-				-0.7
3,285,616	-				+0.6
3,285,628	+		GFF3230	0.10	-0.7
3,285,630	+		GFF3230	0.11	+0.8
3,285,636	-		GFF3230	0.14	-0.8
3,285,636	-		GFF3230	0.14	+0.2
3,285,636	-		GFF3230	0.14	-1.4
3,285,636	-		GFF3230	0.14	+0.0
3,285,642	+		GFF3230	0.16	-0.8
3,285,653	-		GFF3230	0.21	-1.4
3,285,655	+		GFF3230	0.22	-1.0
3,285,660	+		GFF3230	0.24	-0.9
3,285,668	-		GFF3230	0.28	-0.7
3,285,700	+		GFF3230	0.42	-2.0
3,285,700	+		GFF3230	0.42	+0.1
3,285,714	-		GFF3230	0.48	+0.4
3,285,716	+		GFF3230	0.49	+0.2
3,285,718	-		GFF3230	0.50	+0.1