Strain Fitness in Sphingobium sp. HT1-2 around GFF3214

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,270,220	-		GFF3212	0.82	-1.4
3,270,238	+		GFF3212	0.82	-0.5
3,270,239	+		GFF3212	0.83	-0.9
3,270,239	+		GFF3212	0.83	+1.4
3,270,239	+		GFF3212	0.83	-1.3
3,270,239	+		GFF3212	0.83	-0.5
3,270,247	-		GFF3212	0.83	+0.3
3,270,275	+		GFF3212	0.85	-2.0
3,270,285	+		GFF3212	0.85	-0.5
3,270,285	+		GFF3212	0.85	-0.4
3,270,298	-		GFF3212	0.86	-1.4
3,270,298	-		GFF3212	0.86	+0.1
3,270,298	-		GFF3212	0.86	+0.7
3,270,336	-		GFF3212	0.88	-1.2
3,270,341	-		GFF3212	0.88	-0.7
3,270,342	-		GFF3212	0.88	-0.3
3,270,360	-		GFF3212	0.89	-1.7
3,270,384	+				+0.3
3,270,384	+				+2.0
3,270,384	+				-0.9
3,270,392	-				+0.2
3,270,392	-				+0.2
3,270,392	-				-0.3
3,270,392	-				+1.0
3,270,410	-				-1.7
3,270,421	+				-0.4
3,270,452	+				-1.9
3,270,460	-				-0.3
3,270,465	-				+0.3
3,270,466	-				-0.6
3,270,491	+				+1.0
3,270,491	+				-0.2
3,270,491	+				+0.6
3,270,496	+				-1.5
3,270,496	+				-0.1
3,270,496	+				-1.0
3,270,496	+				+1.2
3,270,499	-				-0.4
3,270,499	-				-0.0
3,270,500	+				+0.5
3,270,501	+				+0.6
3,270,501	+				-1.0
3,270,504	-				+0.0
3,270,504	-				+0.9
3,270,504	-				-1.4
3,270,504	-				-1.8
3,270,504	-				-1.3
3,270,504	-				-0.5
3,270,506	-				+0.4
3,270,509	-				+0.3
3,270,526	-				+0.5
3,270,544	+				-0.1
3,270,712	+		GFF3213	0.26	+0.3
3,270,735	-		GFF3213	0.29	-0.2
3,270,745	-		GFF3213	0.31	-2.6
3,270,763	+		GFF3213	0.34	-1.0
3,270,769	+		GFF3213	0.35	-0.7
3,270,786	-		GFF3213	0.38	-0.0
3,270,794	+		GFF3213	0.39	+0.7
3,270,798	-		GFF3213	0.40	+0.2
3,270,827	+		GFF3213	0.44	+0.4
3,270,827	+		GFF3213	0.44	+1.9
3,270,827	+		GFF3213	0.44	+0.6
3,270,827	+		GFF3213	0.44	-0.5
3,270,835	-		GFF3213	0.46	-2.0
3,270,850	-		GFF3213	0.48	-0.3
3,270,890	+		GFF3213	0.54	-0.3
3,270,898	-		GFF3213	0.56	-0.6
3,270,898	-		GFF3213	0.56	-0.3
3,270,898	-		GFF3213	0.56	-0.9
3,270,905	+		GFF3213	0.57	+2.0
3,270,923	+		GFF3213	0.60	-0.1
3,270,934	+		GFF3213	0.62	+0.1
3,270,939	+		GFF3213	0.62	+0.5
3,270,947	-		GFF3213	0.64	+0.3
3,270,947	-		GFF3213	0.64	-0.1
3,270,951	-		GFF3213	0.64	-0.3
3,270,982	-		GFF3213	0.69	-1.5
3,271,006	-		GFF3213	0.73	-1.9
3,271,014	+		GFF3213	0.75	-1.6
3,271,048	+		GFF3213	0.80	-0.2
3,271,056	-		GFF3213	0.81	-1.6
3,271,058	-		GFF3213	0.82	+0.1
3,271,095	+		GFF3213	0.88	+0.0
3,271,097	+		GFF3213	0.88	+0.9
3,271,097	+		GFF3213	0.88	+0.8
3,271,105	-		GFF3213	0.89	+0.4
3,271,105	-		GFF3213	0.89	+0.5
3,271,105	-		GFF3213	0.89	+0.2
3,271,130	+				-1.2
3,271,130	+				-1.7
3,271,138	-				+1.4
3,271,138	-				+1.5
3,271,138	-				-0.3
3,271,157	+				-0.6
3,271,162	+				-0.7
3,271,163	+				-0.5
3,271,163	+				-0.9
3,271,163	+				-2.4
3,271,163	+				+0.3
3,271,165	-				-1.4
3,271,165	-				-0.5
3,271,169	+				+0.0
3,271,171	-				-0.1
3,271,171	-				-0.4
3,271,171	-				+0.3
3,271,194	-				-0.3
3,271,199	+				+0.8
3,271,204	+				+1.3
3,271,206	+				+0.1
3,271,207	-				-2.0
3,271,209	+				+0.2
3,271,212	-				-2.5
3,271,214	+				-0.9
3,271,214	+				+0.2
3,271,214	-				-0.1
3,271,222	+				+1.5
3,271,222	-				-1.6
3,271,222	-				+0.0
3,271,222	-				-1.3
3,271,222	-				-0.6
3,271,224	+				-0.7
3,271,224	+				-1.0
3,271,224	+				+0.7
3,271,224	+				-0.5
3,271,230	-				-0.3
3,271,230	-				+0.9
3,271,232	-				-0.5
3,271,232	-				+0.6
3,271,232	-				-0.3
3,271,232	-				-0.1
3,271,232	-				-2.4
3,271,232	-				-2.4
3,271,239	+				+1.0
3,271,239	+				+1.8
3,271,239	+				+0.0
3,271,239	+				-0.7
3,271,239	+				+0.7
3,271,239	+				+1.2
3,271,239	+				-1.0
3,271,247	-				+0.6
3,271,247	-				+0.9
3,271,247	-				+0.0
3,271,247	-				-1.4
3,271,247	-				+0.0
3,271,247	-				-1.2
3,271,262	-				-0.3
3,271,263	-				-1.1
3,271,268	-				+1.3
3,271,276	+				-0.5
3,271,284	+				-0.2
3,271,284	-				-1.5
3,271,292	-				+1.7
3,271,292	-				-1.7
3,271,296	-				-0.1
3,271,337	+		GFF3214	0.10	+1.0
3,271,337	+		GFF3214	0.10	+0.1
3,271,337	-		GFF3214	0.10	-1.4
3,271,340	-		GFF3214	0.11	+1.2
3,271,344	+		GFF3214	0.11	+0.0
3,271,352	-		GFF3214	0.12	+0.5
3,271,356	-		GFF3214	0.12	-1.3
3,271,397	-		GFF3214	0.15	-1.2
3,271,398	+		GFF3214	0.15	-1.2
3,271,406	+		GFF3214	0.16	-0.6
3,271,411	+		GFF3214	0.16	-0.2
3,271,428	+		GFF3214	0.18	+0.7
3,271,429	+		GFF3214	0.18	+0.0
3,271,429	-		GFF3214	0.18	+0.9
3,271,429	-		GFF3214	0.18	+0.0
3,271,429	-		GFF3214	0.18	-0.1
3,271,436	-		GFF3214	0.18	+1.5
3,271,467	+		GFF3214	0.21	+1.1
3,271,475	-		GFF3214	0.21	-2.0
3,271,496	+		GFF3214	0.23	-1.3
3,271,504	-		GFF3214	0.23	+1.0
3,271,504	-		GFF3214	0.23	+0.7
3,271,504	-		GFF3214	0.23	-1.7
3,271,527	+		GFF3214	0.25	+0.6
3,271,544	-		GFF3214	0.27	-0.4
3,271,562	-		GFF3214	0.28	-0.7
3,271,562	-		GFF3214	0.28	+0.4
3,271,573	+		GFF3214	0.29	-0.3
3,271,593	+		GFF3214	0.30	-0.2
3,271,593	+		GFF3214	0.30	-0.9
3,271,593	+		GFF3214	0.30	+0.7
3,271,593	+		GFF3214	0.30	+0.6
3,271,601	-		GFF3214	0.31	+0.4
3,271,611	+		GFF3214	0.32	-1.5
3,271,611	+		GFF3214	0.32	-1.7
3,271,611	+		GFF3214	0.32	-0.5
3,271,611	+		GFF3214	0.32	+1.0
3,271,611	+		GFF3214	0.32	+0.2
3,271,619	-		GFF3214	0.32	-0.3
3,271,629	+		GFF3214	0.33	+0.6
3,271,664	-		GFF3214	0.36	-0.3
3,271,682	+		GFF3214	0.37	-0.5
3,271,683	-		GFF3214	0.37	-0.0
3,271,684	+		GFF3214	0.37	+0.1
3,271,684	+		GFF3214	0.37	-0.2
3,271,684	+		GFF3214	0.37	+0.8
3,271,684	+		GFF3214	0.37	+0.3
3,271,684	+		GFF3214	0.37	-0.2
3,271,692	-		GFF3214	0.38	+0.3
3,271,692	-		GFF3214	0.38	+0.9
3,271,692	-		GFF3214	0.38	-0.5
3,271,692	-		GFF3214	0.38	-0.3
3,271,692	-		GFF3214	0.38	-0.3
3,271,692	-		GFF3214	0.38	-0.7
3,271,692	-		GFF3214	0.38	+0.5
3,271,703	+		GFF3214	0.39	+0.5
3,271,703	+		GFF3214	0.39	-0.7
3,271,703	+		GFF3214	0.39	-0.9
3,271,711	-		GFF3214	0.39	-0.4
3,271,711	-		GFF3214	0.39	-1.7
3,271,711	-		GFF3214	0.39	-0.1
3,271,714	-		GFF3214	0.40	-0.1
3,271,722	+		GFF3214	0.40	+1.2
3,271,722	+		GFF3214	0.40	-0.3
3,271,725	+		GFF3214	0.41	-0.4
3,271,726	+		GFF3214	0.41	-0.1
3,271,754	+		GFF3214	0.43	-1.6
3,271,817	-		GFF3214	0.48	-1.4
3,271,841	+		GFF3214	0.50	-0.5
3,271,849	-		GFF3214	0.50	-0.2
3,271,865	-		GFF3214	0.51	-1.2
3,271,877	+		GFF3214	0.52	+0.9
3,271,877	+		GFF3214	0.52	-0.2
3,271,885	-		GFF3214	0.53	-0.5
3,271,896	+		GFF3214	0.54	+1.6
3,271,901	+		GFF3214	0.54	-1.2
3,271,901	+		GFF3214	0.54	-0.6
3,271,901	+		GFF3214	0.54	-0.6
3,271,901	-		GFF3214	0.54	-0.6
3,271,906	+		GFF3214	0.55	-0.6
3,271,906	+		GFF3214	0.55	+0.9
3,271,909	-		GFF3214	0.55	+0.4
3,271,909	-		GFF3214	0.55	-1.7
3,271,909	-		GFF3214	0.55	+0.6
3,271,909	-		GFF3214	0.55	-0.5
3,271,909	-		GFF3214	0.55	-2.6
3,271,930	-		GFF3214	0.56	-1.7
3,271,930	-		GFF3214	0.56	-1.1
3,271,942	+		GFF3214	0.57	+0.3
3,271,950	-		GFF3214	0.58	-0.8
3,271,952	+		GFF3214	0.58	-1.5
3,271,952	+		GFF3214	0.58	-1.1
3,271,952	+		GFF3214	0.58	+0.8
3,271,952	+		GFF3214	0.58	-0.4
3,271,952	+		GFF3214	0.58	+0.6
3,271,959	+		GFF3214	0.59	+0.7
3,271,960	-		GFF3214	0.59	+0.4
3,271,960	-		GFF3214	0.59	+0.4
3,271,960	-		GFF3214	0.59	+0.4
3,271,967	-		GFF3214	0.59	-1.1
3,271,967	-		GFF3214	0.59	-1.9
3,271,967	-		GFF3214	0.59	+0.2
3,271,969	+		GFF3214	0.59	-0.0
3,271,969	+		GFF3214	0.59	+0.5
3,271,977	-		GFF3214	0.60	-0.3
3,271,977	-		GFF3214	0.60	+0.7
3,271,977	-		GFF3214	0.60	+0.2
3,271,997	-		GFF3214	0.62	-1.5
3,271,999	+		GFF3214	0.62	-0.6
3,271,999	+		GFF3214	0.62	-0.3
3,272,000	+		GFF3214	0.62	-2.4
3,272,000	+		GFF3214	0.62	-0.3
3,272,005	+		GFF3214	0.62	+0.4
3,272,034	+		GFF3214	0.64	-0.1
3,272,039	+		GFF3214	0.65	+1.4
3,272,039	+		GFF3214	0.65	+0.6
3,272,042	-		GFF3214	0.65	+0.5
3,272,071	+		GFF3214	0.67	+0.2
3,272,093	+		GFF3214	0.69	+1.3
3,272,095	+		GFF3214	0.69	-1.2
3,272,101	-		GFF3214	0.70	+0.0
3,272,112	+		GFF3214	0.71	+0.5
3,272,120	-		GFF3214	0.71	+0.0
3,272,139	-		GFF3214	0.73	-1.3
3,272,179	-		GFF3214	0.76	+0.9
3,272,180	-		GFF3214	0.76	+0.5
3,272,203	+		GFF3214	0.78	+0.6
3,272,209	+		GFF3214	0.78	-1.2
3,272,209	+		GFF3214	0.78	-0.6
3,272,209	+		GFF3214	0.78	-0.1
3,272,211	-		GFF3214	0.78	-0.0
3,272,217	-		GFF3214	0.79	-0.2
3,272,217	-		GFF3214	0.79	+0.2
3,272,217	-		GFF3214	0.79	-0.1
3,272,217	-		GFF3214	0.79	+0.1
3,272,249	+		GFF3214	0.81	+1.3
3,272,249	+		GFF3214	0.81	-0.3
3,272,300	-		GFF3214	0.85	-2.2
3,272,300	-		GFF3214	0.85	-1.3
3,272,304	-		GFF3214	0.85	-0.9
3,272,307	+		GFF3214	0.86	-0.3
3,272,312	+		GFF3214	0.86	-1.0
3,272,318	+		GFF3214	0.87	+0.5
3,272,339	-		GFF3214	0.88	+0.2
3,272,339	-		GFF3214	0.88	+1.2
3,272,370	+				-0.4
3,272,378	-				+0.7
3,272,378	-				-0.1
3,272,397	+				-1.3
3,272,397	+				+0.9
3,272,399	-				-0.5
3,272,399	-				+0.4
3,272,399	-				-0.2
3,272,410	+				+1.1
3,272,421	+				-1.1
3,272,431	+				-0.7
3,272,439	-				+0.1
3,272,455	+				-0.3
3,272,486	-				-1.6
3,272,498	-				-0.1
3,272,757	+				-1.3
3,272,797	-				-0.4
3,272,801	+				+0.1
3,272,805	+				-0.3
3,272,813	-				-1.4
3,272,814	+				+1.1
3,272,814	+				-0.4
3,272,837	+				-1.7
3,272,863	+		GFF3216	0.14	+0.0
3,272,905	+		GFF3216	0.21	-0.7
3,272,905	+		GFF3216	0.21	-0.7
3,272,913	-		GFF3216	0.23	-0.4
3,272,913	-		GFF3216	0.23	+0.3
3,272,915	-		GFF3216	0.23	-0.4
3,272,988	-		GFF3216	0.35	-1.1
3,272,993	-		GFF3216	0.36	-0.4
3,273,019	-		GFF3216	0.41	-0.3
3,273,024	-		GFF3216	0.41	+0.9
3,273,040	+		GFF3216	0.44	-0.6
3,273,040	+		GFF3216	0.44	-1.6
3,273,040	+		GFF3216	0.44	-0.8
3,273,041	+		GFF3216	0.44	-0.2
3,273,041	+		GFF3216	0.44	-0.4
3,273,049	-		GFF3216	0.46	+2.0
3,273,049	-		GFF3216	0.46	-0.2
3,273,051	+		GFF3216	0.46	+1.8
3,273,051	+		GFF3216	0.46	+0.0
3,273,059	-		GFF3216	0.47	-1.6
3,273,059	-		GFF3216	0.47	-0.3
3,273,098	+		GFF3216	0.54	-0.7
3,273,101	-		GFF3216	0.55	-0.1
3,273,111	-		GFF3216	0.56	+1.5
3,273,117	+		GFF3216	0.57	-0.4
3,273,117	+		GFF3216	0.57	-0.5
3,273,122	+		GFF3216	0.58	-1.4
3,273,126	+		GFF3216	0.59	-0.1
3,273,131	+		GFF3216	0.60	+0.4
3,273,134	+		GFF3216	0.60	-0.4
3,273,136	+		GFF3216	0.61	-0.4
3,273,162	-		GFF3216	0.65	-0.5
3,273,201	+		GFF3216	0.72	-0.8
3,273,206	+		GFF3216	0.72	+1.6
3,273,206	+		GFF3216	0.72	+0.6
3,273,206	+		GFF3216	0.72	-0.6
3,273,206	+		GFF3216	0.72	-2.2
3,273,209	-		GFF3216	0.73	-0.6
3,273,211	+		GFF3216	0.73	-0.8
3,273,211	+		GFF3216	0.73	+0.9
3,273,211	+		GFF3216	0.73	+1.3
3,273,211	+		GFF3216	0.73	-0.4
3,273,214	-		GFF3216	0.74	-0.2
3,273,214	-		GFF3216	0.74	-1.1
3,273,214	-		GFF3216	0.74	-0.8
3,273,214	-		GFF3216	0.74	+0.2
3,273,214	-		GFF3216	0.74	-1.4
3,273,219	-		GFF3216	0.75	-0.3
3,273,219	-		GFF3216	0.75	-0.8
3,273,233	+		GFF3216	0.77	+1.3
3,273,233	+		GFF3216	0.77	+0.7
3,273,233	+		GFF3216	0.77	-2.1
3,273,233	+		GFF3216	0.77	+0.6
3,273,233	+		GFF3216	0.77	-0.4
3,273,233	+		GFF3216	0.77	+0.4
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