Strain Fitness in Sphingobium sp. HT1-2 around GFF3198

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,257,280	+		GFF3196	0.51	+0.4
3,257,288	-		GFF3196	0.52	+0.1
3,257,325	+		GFF3196	0.58	+0.7
3,257,333	-		GFF3196	0.59	-2.0
3,257,338	-		GFF3196	0.60	-0.8
3,257,348	-		GFF3196	0.62	+0.8
3,257,358	+		GFF3196	0.63	-0.7
3,257,359	-		GFF3196	0.64	-2.0
3,257,366	-		GFF3196	0.65	-0.7
3,257,366	-		GFF3196	0.65	+1.0
3,257,377	+		GFF3196	0.67	-0.6
3,257,377	+		GFF3196	0.67	-1.3
3,257,377	+		GFF3196	0.67	+1.1
3,257,384	+		GFF3196	0.68	+0.9
3,257,389	+		GFF3196	0.68	-0.4
3,257,389	+		GFF3196	0.68	+0.7
3,257,392	-		GFF3196	0.69	+0.8
3,257,392	-		GFF3196	0.69	+0.4
3,257,397	-		GFF3196	0.70	-1.7
3,257,411	-		GFF3196	0.72	+0.5
3,257,468	+		GFF3196	0.81	+0.7
3,257,468	+		GFF3196	0.81	+0.4
3,257,468	+		GFF3196	0.81	-0.5
3,257,476	-		GFF3196	0.82	+1.2
3,257,476	-		GFF3196	0.82	-0.5
3,257,509	-		GFF3196	0.88	-1.0
3,257,513	+		GFF3196	0.88	-0.0
3,257,521	-		GFF3196	0.90	+0.5
3,257,528	+				+0.0
3,257,541	-				-1.1
3,257,551	+				-0.8
3,257,551	+				+1.2
3,257,551	+				-0.4
3,257,551	+				+1.0
3,257,559	-				-0.5
3,257,559	-				+0.6
3,257,559	-				-0.3
3,257,563	-				-0.5
3,257,573	+				-0.1
3,257,578	+				-0.5
3,257,583	+				+0.6
3,257,584	+				-1.7
3,257,584	+				-0.1
3,257,584	+				-0.6
3,257,584	+				-0.9
3,257,592	-				+0.6
3,257,592	-				+0.8
3,257,592	-				-0.4
3,257,592	-				+0.2
3,257,594	-				-0.8
3,257,601	+				+0.1
3,257,601	+				+0.3
3,257,601	+				-0.4
3,257,606	+				-2.2
3,257,609	-				-0.3
3,257,609	-				-3.0
3,257,609	-				+0.9
3,257,609	-				-0.2
3,257,619	-				-0.1
3,257,623	+				-1.5
3,257,655	+				+0.1
3,257,656	+				+0.6
3,257,662	-				+0.5
3,257,716	-				-0.6
3,257,731	-		GFF3197	0.11	+0.1
3,257,733	+		GFF3197	0.12	-0.5
3,257,736	+		GFF3197	0.12	+1.8
3,257,786	+		GFF3197	0.20	-2.6
3,257,805	+		GFF3197	0.24	-2.6
3,257,852	-		GFF3197	0.31	+0.2
3,257,857	-		GFF3197	0.32	-0.4
3,257,859	+		GFF3197	0.33	-0.7
3,257,859	+		GFF3197	0.33	-0.1
3,257,859	+		GFF3197	0.33	-1.0
3,257,859	+		GFF3197	0.33	-0.5
3,257,859	+		GFF3197	0.33	+0.0
3,257,864	-		GFF3197	0.33	-0.7
3,257,867	-		GFF3197	0.34	-0.6
3,257,867	-		GFF3197	0.34	+0.9
3,257,894	+		GFF3197	0.38	-0.1
3,257,894	+		GFF3197	0.38	-0.4
3,257,902	-		GFF3197	0.40	-0.2
3,257,902	-		GFF3197	0.40	+0.3
3,257,918	+		GFF3197	0.42	+0.3
3,257,925	-		GFF3197	0.43	+0.4
3,257,928	+		GFF3197	0.44	-2.0
3,257,936	-		GFF3197	0.45	+0.5
3,257,963	-		GFF3197	0.50	+0.1
3,257,970	+		GFF3197	0.51	-2.2
3,258,016	-		GFF3197	0.59	-0.7
3,258,024	-		GFF3197	0.60	+1.0
3,258,047	-		GFF3197	0.64	+0.3
3,258,064	+		GFF3197	0.67	+0.3
3,258,076	-		GFF3197	0.68	+0.2
3,258,109	+		GFF3197	0.74	+0.6
3,258,117	-		GFF3197	0.75	-0.7
3,258,128	-		GFF3197	0.77	+0.5
3,258,133	+		GFF3197	0.78	+0.7
3,258,133	-		GFF3197	0.78	+0.2
3,258,133	-		GFF3197	0.78	-1.7
3,258,141	+		GFF3197	0.79	+0.0
3,258,154	+		GFF3197	0.81	-1.8
3,258,167	-		GFF3197	0.84	-1.7
3,258,194	-		GFF3197	0.88	-0.4
3,258,198	-		GFF3197	0.89	+0.4
3,258,212	+				+0.3
3,258,220	-				-1.9
3,258,220	-				+0.5
3,258,223	-				-0.0
3,258,244	+				+0.7
3,258,258	+				-0.1
3,258,260	+				+0.6
3,258,266	-				-0.3
3,258,268	-				+0.4
3,258,270	-				+1.2
3,258,272	+				+0.2
3,258,272	+				+0.9
3,258,290	+				-0.2
3,258,290	+				+1.0
3,258,290	+				+0.2
3,258,298	-				-1.9
3,258,298	-				-0.5
3,258,308	+				-0.2
3,258,308	+				-2.0
3,258,311	-				-0.5
3,258,316	-				+1.1
3,258,316	-				-0.5
3,258,316	-				+0.9
3,258,316	-				+1.3
3,258,316	-				-1.0
3,258,316	-				-1.7
3,258,316	-				+1.1
3,258,316	-				-1.3
3,258,316	-				+1.4
3,258,321	-				+1.2
3,258,356	+				+0.8
3,258,361	+				-0.3
3,258,376	-				-2.4
3,258,380	+				+0.4
3,258,390	-				-1.1
3,258,390	-				+0.5
3,258,408	+				+0.0
3,258,420	-				+0.9
3,258,451	-		GFF3198	0.10	-0.9
3,258,499	+		GFF3198	0.13	+1.2
3,258,499	+		GFF3198	0.13	+0.3
3,258,507	-		GFF3198	0.14	-1.4
3,258,507	-		GFF3198	0.14	-0.3
3,258,507	-		GFF3198	0.14	-0.6
3,258,507	-		GFF3198	0.14	-2.3
3,258,547	+		GFF3198	0.16	+0.8
3,258,547	+		GFF3198	0.16	+1.0
3,258,550	-		GFF3198	0.16	+0.0
3,258,555	-		GFF3198	0.16	-0.8
3,258,555	-		GFF3198	0.16	-0.0
3,258,606	-		GFF3198	0.19	-0.5
3,258,617	-		GFF3198	0.20	+0.8
3,258,633	+		GFF3198	0.21	-0.4
3,258,640	-		GFF3198	0.21	-0.7
3,258,651	-		GFF3198	0.22	-1.2
3,258,668	+		GFF3198	0.23	-1.2
3,258,668	+		GFF3198	0.23	-0.8
3,258,688	+		GFF3198	0.24	+0.3
3,258,732	+		GFF3198	0.27	-0.0
3,258,776	+		GFF3198	0.29	-0.7
3,258,776	+		GFF3198	0.29	-1.6
3,258,779	+		GFF3198	0.29	+1.7
3,258,782	-		GFF3198	0.30	-0.1
3,258,784	-		GFF3198	0.30	+0.3
3,258,784	-		GFF3198	0.30	-0.5
3,258,797	-		GFF3198	0.30	-0.8
3,258,816	-		GFF3198	0.32	+1.1
3,258,821	-		GFF3198	0.32	-0.5
3,258,821	-		GFF3198	0.32	-1.4
3,258,828	+		GFF3198	0.32	-2.1
3,258,838	+		GFF3198	0.33	-1.6
3,258,843	+		GFF3198	0.33	+0.7
3,258,843	+		GFF3198	0.33	+0.9
3,258,843	+		GFF3198	0.33	+0.8
3,258,843	+		GFF3198	0.33	+0.5
3,258,843	+		GFF3198	0.33	-0.2
3,258,843	+		GFF3198	0.33	-1.6
3,258,851	-		GFF3198	0.34	+0.5
3,258,851	-		GFF3198	0.34	-0.8
3,258,851	-		GFF3198	0.34	+0.9
3,258,851	-		GFF3198	0.34	-2.2
3,258,851	-		GFF3198	0.34	+0.8
3,258,851	-		GFF3198	0.34	-0.1
3,258,851	-		GFF3198	0.34	-1.3
3,258,851	-		GFF3198	0.34	+0.0
3,258,851	-		GFF3198	0.34	+0.0
3,258,899	+		GFF3198	0.36	+1.0
3,258,904	+		GFF3198	0.37	-0.8
3,258,907	-		GFF3198	0.37	-0.8
3,258,907	-		GFF3198	0.37	+0.0
3,258,912	+		GFF3198	0.37	-2.2
3,258,922	+		GFF3198	0.38	-1.7
3,258,966	+		GFF3198	0.40	-0.2
3,258,966	+		GFF3198	0.40	+0.6
3,258,991	+		GFF3198	0.42	-1.3
3,259,004	+		GFF3198	0.42	+0.1
3,259,008	+		GFF3198	0.43	+0.6
3,259,049	+		GFF3198	0.45	-0.9
3,259,062	+		GFF3198	0.46	-0.4
3,259,072	-		GFF3198	0.46	+0.2
3,259,100	-		GFF3198	0.48	-1.9
3,259,122	+		GFF3198	0.49	+0.1
3,259,128	+		GFF3198	0.50	+0.2
3,259,138	+		GFF3198	0.50	+0.6
3,259,138	+		GFF3198	0.50	-2.2
3,259,138	+		GFF3198	0.50	-0.6
3,259,138	+		GFF3198	0.50	-0.3
3,259,138	+		GFF3198	0.50	-0.6
3,259,146	-		GFF3198	0.51	+0.0
3,259,146	-		GFF3198	0.51	-2.4
3,259,172	+		GFF3198	0.52	-0.2
3,259,185	-		GFF3198	0.53	+0.2
3,259,185	-		GFF3198	0.53	-1.4
3,259,196	+		GFF3198	0.54	-0.1
3,259,196	+		GFF3198	0.54	-0.5
3,259,204	+		GFF3198	0.54	+0.2
3,259,204	-		GFF3198	0.54	+0.8
3,259,212	-		GFF3198	0.55	-0.1
3,259,212	-		GFF3198	0.55	-0.7
3,259,227	-		GFF3198	0.55	-0.2
3,259,227	-		GFF3198	0.55	+0.3
3,259,241	-		GFF3198	0.56	-1.2
3,259,255	-		GFF3198	0.57	-0.6
3,259,258	-		GFF3198	0.57	+0.0
3,259,262	+		GFF3198	0.58	-0.1
3,259,270	-		GFF3198	0.58	-0.2
3,259,270	-		GFF3198	0.58	+0.4
3,259,291	+		GFF3198	0.59	-2.0
3,259,291	+		GFF3198	0.59	+0.8
3,259,291	+		GFF3198	0.59	-1.6
3,259,297	+		GFF3198	0.60	+1.7
3,259,299	-		GFF3198	0.60	-0.3
3,259,305	-		GFF3198	0.60	+1.2
3,259,307	+		GFF3198	0.60	+0.4
3,259,315	-		GFF3198	0.61	-0.1
3,259,335	+		GFF3198	0.62	+0.5
3,259,345	+		GFF3198	0.62	+0.3
3,259,345	+		GFF3198	0.62	+1.9
3,259,345	+		GFF3198	0.62	-1.3
3,259,351	+		GFF3198	0.63	+0.9
3,259,353	-		GFF3198	0.63	-1.2
3,259,353	-		GFF3198	0.63	-1.3
3,259,353	-		GFF3198	0.63	-0.3
3,259,354	-		GFF3198	0.63	-0.1
3,259,354	-		GFF3198	0.63	+1.0
3,259,364	+		GFF3198	0.63	-0.6
3,259,373	+		GFF3198	0.64	-1.3
3,259,394	+		GFF3198	0.65	+0.6
3,259,399	+		GFF3198	0.66	+0.5
3,259,399	+		GFF3198	0.66	+0.5
3,259,407	-		GFF3198	0.66	+0.3
3,259,416	+		GFF3198	0.66	+0.2
3,259,428	+		GFF3198	0.67	+0.0
3,259,433	+		GFF3198	0.67	+0.6
3,259,438	+		GFF3198	0.68	+0.3
3,259,441	-		GFF3198	0.68	-1.5
3,259,441	-		GFF3198	0.68	+0.9
3,259,446	-		GFF3198	0.68	+0.0
3,259,446	-		GFF3198	0.68	-0.8
3,259,446	-		GFF3198	0.68	-1.5
3,259,463	+		GFF3198	0.69	-1.0
3,259,483	+		GFF3198	0.70	+2.2
3,259,491	-		GFF3198	0.71	+0.0
3,259,524	+		GFF3198	0.73	-0.6
3,259,524	+		GFF3198	0.73	-0.1
3,259,572	+		GFF3198	0.76	-1.8
3,259,580	-		GFF3198	0.76	-1.1
3,259,604	+		GFF3198	0.77	-0.9
3,259,604	+		GFF3198	0.77	+0.6
3,259,609	+		GFF3198	0.78	+0.8
3,259,614	+		GFF3198	0.78	-1.1
3,259,614	+		GFF3198	0.78	-1.1
3,259,617	-		GFF3198	0.78	-0.4
3,259,622	-		GFF3198	0.78	+0.4
3,259,622	-		GFF3198	0.78	+0.9
3,259,622	-		GFF3198	0.78	+0.2
3,259,622	-		GFF3198	0.78	-1.4
3,259,622	-		GFF3198	0.78	+1.0
3,259,643	-		GFF3198	0.80	+1.2
3,259,644	-		GFF3198	0.80	-0.1
3,259,651	+		GFF3198	0.80	-0.2
3,259,651	+		GFF3198	0.80	-1.4
3,259,651	+		GFF3198	0.80	+0.6
3,259,658	+		GFF3198	0.81	-0.1
3,259,659	-		GFF3198	0.81	-1.1
3,259,666	-		GFF3198	0.81	-0.1
3,259,711	+		GFF3198	0.84	-0.7
3,259,719	-		GFF3198	0.84	-0.8
3,259,719	-		GFF3198	0.84	-0.2
3,259,719	-		GFF3198	0.84	-0.2
3,259,726	+		GFF3198	0.85	+0.5
3,259,737	+		GFF3198	0.85	-0.8
3,259,747	+		GFF3198	0.86	-0.0
3,259,750	-		GFF3198	0.86	+0.0
3,259,755	-		GFF3198	0.86	-0.8
3,259,755	-		GFF3198	0.86	-0.2
3,259,760	+		GFF3198	0.87	+0.8
3,259,768	-		GFF3198	0.87	-0.8
3,259,769	+		GFF3198	0.87	-1.4
3,259,769	+		GFF3198	0.87	+1.2
3,259,769	+		GFF3198	0.87	-0.3
3,259,782	-		GFF3198	0.88	-0.1
3,259,814	-		GFF3198	0.90	-0.0
3,259,814	-		GFF3198	0.90	+1.2
3,259,818	+		GFF3198	0.90	-0.6
3,259,824	-				+0.5
3,259,828	+				-2.0
3,259,828	+				+0.7
3,259,828	+				-0.8
3,259,828	+				+0.6
3,259,828	+				-1.5
3,259,828	+				-0.6
3,259,828	+				+0.4
3,259,828	+				-1.5
3,259,828	+				+1.0
3,259,828	+				+0.6
3,259,828	+				-0.1
3,259,828	+				-0.9
3,259,828	+				-1.1
3,259,828	+				-1.0
3,259,833	+				-1.2
3,259,836	-				+0.0
3,259,836	-				+0.2
3,259,836	-				+0.3
3,259,836	-				-0.4
3,259,836	-				+0.1
3,259,836	-				+0.5
3,259,836	-				-0.5
3,259,836	-				-0.3
3,259,836	-				+0.9
3,259,841	-				+0.8
3,259,841	-				-2.3
3,259,841	-				-0.7
3,259,841	-				-0.2
3,259,864	+				-0.3
3,259,864	+				-0.5
3,259,864	+				-0.8
3,259,871	+				+1.1
3,259,877	+				+0.3
3,259,887	+				-0.4
3,259,887	+				-1.0
3,259,887	+				-1.7
3,259,897	+				-1.2
3,259,900	-				+0.3
3,259,906	+				+0.1
3,259,906	+				+0.0
3,259,906	+				+0.0
3,259,914	-				+0.1
3,259,914	-				-0.1
3,259,914	-				-0.6
3,259,920	-				+0.5
3,259,929	+				+0.7
3,259,972	+				+0.9
3,259,984	+				-0.1
3,259,984	+				+0.8
3,259,984	+				+0.1
3,259,984	+				-0.1
3,259,984	+				+0.4
3,259,987	-				+1.3
3,259,987	-				-0.7
3,259,992	-				+0.9
3,260,035	+				-1.8
3,260,043	-				-0.2
3,260,043	-				+1.1
3,260,044	+				+0.3
3,260,045	+				-0.4
3,260,045	+				+0.0
3,260,045	+				+0.1
3,260,052	-				-0.2
3,260,057	+				+0.4
3,260,072	-				-1.4
3,260,128	-				+0.6
3,260,129	-				+0.2
3,260,151	-				-1.7
3,260,166	+				-1.4
3,260,166	+				-0.0
3,260,169	-				-0.9
3,260,179	-				+0.3
3,260,179	-				+0.5
3,260,179	-				-0.1
3,260,211	+		GFF3199	0.14	+0.4
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