Strain Fitness in Sphingobium sp. HT1-2 around GFF3189

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,248,783	-		GFF3187	0.25	-0.3
3,248,800	-		GFF3187	0.31	+0.9
3,248,813	-		GFF3187	0.36	-1.0
3,248,818	-		GFF3187	0.38	-1.3
3,248,823	-		GFF3187	0.39	-0.8
3,248,837	-		GFF3187	0.44	-2.3
3,248,849	+		GFF3187	0.49	+2.0
3,248,862	+		GFF3187	0.53	-0.7
3,248,862	+		GFF3187	0.53	-1.6
3,248,872	+		GFF3187	0.57	+0.5
3,248,903	+		GFF3187	0.68	+0.6
3,248,910	-		GFF3187	0.70	+0.4
3,248,912	+		GFF3187	0.71	-1.7
3,248,922	+		GFF3187	0.74	+0.2
3,248,924	+		GFF3187	0.75	-2.2
3,248,924	+		GFF3187	0.75	-0.2
3,248,924	+		GFF3187	0.75	+0.5
3,248,924	+		GFF3187	0.75	-0.7
3,248,924	+		GFF3187	0.75	+0.6
3,248,928	+		GFF3187	0.77	+0.5
3,248,930	-		GFF3187	0.77	-0.4
3,248,930	-		GFF3187	0.77	-2.3
3,248,930	-		GFF3187	0.77	-1.3
3,248,930	-		GFF3187	0.77	-0.2
3,248,930	-		GFF3187	0.77	+0.8
3,248,930	-		GFF3187	0.77	-0.7
3,248,932	-		GFF3187	0.78	-0.7
3,248,932	-		GFF3187	0.78	+0.5
3,248,932	-		GFF3187	0.78	+0.6
3,248,932	-		GFF3187	0.78	+0.3
3,248,932	-		GFF3187	0.78	-0.8
3,248,942	+		GFF3187	0.82	+0.0
3,248,950	-		GFF3187	0.84	-0.6
3,248,955	+		GFF3187	0.86	+0.3
3,248,969	-				-1.3
3,248,972	+				+0.6
3,248,978	+				-1.1
3,248,979	+				-2.5
3,248,980	-				+1.1
3,249,044	-				-0.6
3,249,044	-				-1.1
3,249,044	-				+0.3
3,249,044	-				-0.1
3,249,044	-				-0.6
3,249,044	-				+1.3
3,249,065	-				-0.2
3,249,065	-				+0.3
3,249,106	+				-1.1
3,249,111	+				+1.1
3,249,120	+				+0.2
3,249,120	+				+0.2
3,249,128	+				-0.8
3,249,128	-				+1.2
3,249,130	+				-0.8
3,249,130	+				-0.7
3,249,130	+				-0.7
3,249,130	+				-0.8
3,249,130	+				+1.0
3,249,138	-				-0.1
3,249,150	+				+0.3
3,249,152	+				-0.8
3,249,152	+				+0.3
3,249,152	+				+0.3
3,249,152	+				-0.0
3,249,152	+				-0.3
3,249,152	+				+1.3
3,249,152	+				-0.3
3,249,152	+				-0.9
3,249,152	+				+0.3
3,249,157	+				-1.5
3,249,158	+				-1.6
3,249,160	-				+0.1
3,249,160	-				-1.4
3,249,160	-				-1.7
3,249,160	-				-1.0
3,249,160	-				-0.2
3,249,160	-				-2.1
3,249,183	-				-1.4
3,249,200	+				+0.2
3,249,295	-		GFF3188	0.24	+0.6
3,249,332	-		GFF3188	0.32	-1.5
3,249,576	-		GFF3188	0.81	-1.3
3,249,581	-		GFF3188	0.82	-1.7
3,249,642	+				+0.8
3,249,642	+				+1.4
3,249,663	+				-0.2
3,249,663	+				-0.4
3,249,664	-				-1.0
3,249,666	-				-0.6
3,249,666	-				+0.7
3,249,666	-				-0.1
3,249,666	-				-0.8
3,249,671	-				-0.1
3,249,671	-				+0.8
3,249,671	-				+0.4
3,249,679	-				+0.4
3,249,694	+				-1.4
3,249,694	+				-0.7
3,249,702	-				-0.9
3,249,702	-				-0.6
3,249,702	-				-0.3
3,249,743	+				-0.1
3,249,743	+				-0.2
3,249,758	+				-2.1
3,249,760	-				-0.0
3,249,764	-				-1.3
3,249,783	-				+0.1
3,249,785	-				+0.2
3,249,801	-				+2.1
3,249,801	-				-0.8
3,249,803	+				-0.4
3,249,803	+				-1.5
3,249,803	+				+1.1
3,249,803	+				+0.4
3,249,803	+				+0.1
3,249,809	+				+0.3
3,249,811	-				-1.0
3,249,811	-				+0.3
3,249,811	-				-0.1
3,249,811	-				+0.2
3,249,811	-				-0.8
3,249,845	-		GFF3189	0.13	+0.7
3,249,922	-		GFF3189	0.24	-0.2
3,249,935	+		GFF3189	0.26	-1.1
3,249,972	+		GFF3189	0.31	+0.3
3,249,972	+		GFF3189	0.31	-0.1
3,249,974	+		GFF3189	0.32	-1.1
3,249,974	+		GFF3189	0.32	+0.5
3,249,974	+		GFF3189	0.32	+0.2
3,249,974	+		GFF3189	0.32	-0.8
3,249,975	-		GFF3189	0.32	+0.4
3,249,975	-		GFF3189	0.32	+0.3
3,249,975	-		GFF3189	0.32	-1.1
3,249,975	-		GFF3189	0.32	+0.0
3,249,980	-		GFF3189	0.33	+0.9
3,249,981	-		GFF3189	0.33	-1.5
3,249,982	-		GFF3189	0.33	-0.2
3,249,982	-		GFF3189	0.33	+0.0
3,250,015	+		GFF3189	0.38	+0.8
3,250,016	-		GFF3189	0.38	-1.1
3,250,022	-		GFF3189	0.39	-1.8
3,250,022	-		GFF3189	0.39	-1.4
3,250,029	+		GFF3189	0.40	-2.1
3,250,037	-		GFF3189	0.41	-2.0
3,250,081	-		GFF3189	0.48	+0.2
3,250,138	-		GFF3189	0.56	-0.0
3,250,163	+		GFF3189	0.60	+1.1
3,250,163	+		GFF3189	0.60	-0.1
3,250,187	-		GFF3189	0.63	-0.1
3,250,195	+		GFF3189	0.64	-0.4
3,250,195	+		GFF3189	0.64	+0.3
3,250,212	-		GFF3189	0.67	+0.6
3,250,230	+		GFF3189	0.70	+0.8
3,250,230	+		GFF3189	0.70	+0.1
3,250,230	+		GFF3189	0.70	+0.5
3,250,230	+		GFF3189	0.70	-0.1
3,250,230	+		GFF3189	0.70	+1.4
3,250,230	+		GFF3189	0.70	-2.2
3,250,230	+		GFF3189	0.70	-0.2
3,250,231	-		GFF3189	0.70	-0.4
3,250,233	+		GFF3189	0.70	-2.4
3,250,238	-		GFF3189	0.71	-0.7
3,250,238	-		GFF3189	0.71	-0.3
3,250,239	-		GFF3189	0.71	-0.8
3,250,246	+		GFF3189	0.72	+0.3
3,250,246	+		GFF3189	0.72	-0.8
3,250,246	+		GFF3189	0.72	-0.5
3,250,251	+		GFF3189	0.73	-0.2
3,250,251	+		GFF3189	0.73	-2.5
3,250,251	+		GFF3189	0.73	-0.0
3,250,254	-		GFF3189	0.73	-0.3
3,250,259	-		GFF3189	0.74	+1.0
3,250,259	-		GFF3189	0.74	+0.6
3,250,259	-		GFF3189	0.74	-1.4
3,250,259	-		GFF3189	0.74	-0.0
3,250,259	-		GFF3189	0.74	-0.1
3,250,270	+		GFF3189	0.76	-0.7
3,250,318	+		GFF3189	0.83	+0.1
3,250,319	-		GFF3189	0.83	+0.7
3,250,325	+		GFF3189	0.84	+1.2
3,250,327	-		GFF3189	0.84	+1.7
3,250,349	+		GFF3189	0.87	-0.8
3,250,355	-		GFF3189	0.88	-0.3
3,250,355	-		GFF3189	0.88	-0.6
3,250,367	+				-0.1
3,250,398	+				+1.1
3,250,415	-				-0.8
3,250,429	-				-1.5
3,250,464	-				+0.0
3,250,477	-				+1.1
3,250,492	+				-2.2
3,250,526	+				-0.4
3,250,526	+				+0.6
3,250,534	-				-0.4
3,250,534	-				+0.8
3,250,539	-				+0.5
3,250,583	+				-0.5
3,250,598	-				-2.2
3,250,628	+				+0.6
3,250,647	+				-1.0
3,250,674	-				+0.5
3,250,702	+				+0.7
3,250,732	-				-0.8
3,250,740	+				-0.3
3,250,740	+				+0.3
3,250,740	+				+0.0
3,250,748	-				-1.1
3,250,748	-				-0.3
3,250,754	-				-0.6
3,250,761	+				+0.9
3,250,811	+				-1.9
3,250,827	-				-0.3
3,250,841	+				+1.6
3,250,841	+				-0.1
3,250,841	+				-0.2
3,250,841	+				+0.6
3,250,849	-				+0.7
3,250,849	-				-2.4
3,250,860	+				+0.9
3,250,860	+				-1.6
3,250,860	+				-0.4
3,250,860	+				-0.9
3,250,860	+				-0.7
3,250,860	+				-0.2
3,250,868	-				-0.8
3,250,868	-				+0.3
3,250,868	-				+1.2
3,250,868	-				-0.5
3,250,868	-				-0.7
3,250,873	-				+0.9
3,250,887	+				+0.3
3,250,895	+				-1.0
3,250,903	-				-1.1
3,250,925	-				+0.4
3,250,959	-				+0.3
3,250,993	+				+1.4
3,251,004	+				+1.3
3,251,012	-				-1.5
3,251,027	+				+0.6
3,251,032	+				-1.4
3,251,040	-				-1.3
3,251,040	-				+0.2
3,251,085	+		GFF3190	0.17	-1.6
3,251,085	+		GFF3190	0.17	+1.3
3,251,093	-		GFF3190	0.18	-0.5
3,251,095	-		GFF3190	0.19	-0.5
3,251,096	+		GFF3190	0.19	-0.6
3,251,101	+		GFF3190	0.20	+0.9
3,251,101	+		GFF3190	0.20	-1.9
3,251,101	+		GFF3190	0.20	+0.3
3,251,101	+		GFF3190	0.20	+0.4
3,251,101	+		GFF3190	0.20	-0.3
3,251,109	-		GFF3190	0.21	-0.3
3,251,109	-		GFF3190	0.21	+0.2
3,251,109	-		GFF3190	0.21	-0.4
3,251,109	-		GFF3190	0.21	-0.4
3,251,109	-		GFF3190	0.21	-0.5
3,251,109	-		GFF3190	0.21	-2.4
3,251,109	-		GFF3190	0.21	-1.1
3,251,147	+		GFF3190	0.28	+0.1
3,251,156	+		GFF3190	0.29	-0.3
3,251,174	-		GFF3190	0.33	-1.9
3,251,184	+		GFF3190	0.34	-0.0
3,251,192	-		GFF3190	0.36	+0.4
3,251,200	-		GFF3190	0.37	-1.0
3,251,202	-		GFF3190	0.38	-1.9
3,251,202	-		GFF3190	0.38	-0.6
3,251,217	+		GFF3190	0.40	+0.1
3,251,222	+		GFF3190	0.41	+0.2
3,251,230	-		GFF3190	0.43	-0.0
3,251,232	+		GFF3190	0.43	-0.3
3,251,245	-		GFF3190	0.45	-0.8
3,251,246	-		GFF3190	0.45	+1.2
3,251,269	-		GFF3190	0.49	-0.5
3,251,313	-		GFF3190	0.57	-2.2
3,251,320	+		GFF3190	0.59	-1.1
3,251,320	+		GFF3190	0.59	+0.3
3,251,328	-		GFF3190	0.60	+0.5
3,251,328	-		GFF3190	0.60	-0.0
3,251,328	-		GFF3190	0.60	+0.2
3,251,350	-		GFF3190	0.64	+0.1
3,251,350	-		GFF3190	0.64	-0.2
3,251,425	+		GFF3190	0.77	-0.4