Strain Fitness in Sphingobium sp. HT1-2 around GFF3186

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,247,158	-		GFF3184	0.64	-0.4
3,247,158	-		GFF3184	0.64	-0.7
3,247,160	+		GFF3184	0.64	-1.9
3,247,168	-		GFF3184	0.66	+0.9
3,247,197	-		GFF3184	0.73	-2.4
3,247,215	-		GFF3184	0.77	-0.2
3,247,225	+		GFF3184	0.79	+0.7
3,247,230	+		GFF3184	0.80	+0.1
3,247,230	+		GFF3184	0.80	-2.3
3,247,230	+		GFF3184	0.80	+0.1
3,247,231	+		GFF3184	0.80	+1.0
3,247,233	-		GFF3184	0.81	-0.2
3,247,233	-		GFF3184	0.81	+0.3
3,247,238	-		GFF3184	0.82	-0.4
3,247,239	-		GFF3184	0.82	+0.1
3,247,239	-		GFF3184	0.82	+0.7
3,247,239	-		GFF3184	0.82	+0.0
3,247,248	-		GFF3184	0.84	+0.7
3,247,254	+		GFF3184	0.85	-0.8
3,247,254	+		GFF3184	0.85	+0.1
3,247,254	+		GFF3184	0.85	+0.7
3,247,259	+		GFF3184	0.86	+0.0
3,247,259	+		GFF3184	0.86	+1.4
3,247,259	+		GFF3184	0.86	-2.1
3,247,262	-		GFF3184	0.87	-0.4
3,247,262	-		GFF3184	0.87	-0.9
3,247,262	-		GFF3184	0.87	-2.6
3,247,262	-		GFF3184	0.87	+0.7
3,247,262	-		GFF3184	0.87	+1.0
3,247,266	+		GFF3184	0.88	+0.2
3,247,268	+		GFF3184	0.88	-0.7
3,247,274	-		GFF3184	0.90	+0.5
3,247,305	+				-0.9
3,247,347	-				+0.8
3,247,359	+				-0.5
3,247,360	+				+0.2
3,247,360	+				+0.2
3,247,360	-				+0.3
3,247,367	+				-1.0
3,247,374	+				-0.2
3,247,399	+		GFF3185	0.23	-1.3
3,247,401	-		GFF3185	0.25	+0.2
3,247,409	-		GFF3185	0.32	+0.2
3,247,421	-		GFF3185	0.42	+0.4
3,247,467	-		GFF3185	0.80	+0.2
3,247,471	+		GFF3185	0.83	-0.1
3,247,472	-		GFF3185	0.84	-1.2
3,247,475	+		GFF3185	0.87	+0.3
3,247,482	+				+0.7
3,247,482	+				-2.1
3,247,482	+				-1.2
3,247,482	+				-0.1
3,247,482	+				-0.7
3,247,482	+				-2.1
3,247,482	+				+0.2
3,247,482	+				-1.1
3,247,482	+				+0.3
3,247,482	+				-0.9
3,247,488	-				-1.0
3,247,488	-				+0.9
3,247,490	-				-0.5
3,247,490	-				+0.3
3,247,490	-				-1.3
3,247,490	-				-0.5
3,247,490	-				+0.7
3,247,505	-				-0.9
3,247,529	+				+0.4
3,247,529	+				+0.3
3,247,544	+				+0.5
3,247,556	+				-0.6
3,247,561	+				-1.4
3,247,561	+				-1.9
3,247,561	+				+1.2
3,247,561	+				+0.4
3,247,566	+				+1.1
3,247,566	+				-0.1
3,247,571	+				-0.4
3,247,595	+				-1.1
3,247,610	-				+0.1
3,247,611	+				+1.7
3,247,611	+				-1.8
3,247,612	+				+0.2
3,247,612	+				+1.1
3,247,612	+				+0.7
3,247,612	+				-0.1
3,247,612	+				-1.6
3,247,612	+				-0.9
3,247,612	+				+0.5
3,247,613	+				+0.1
3,247,620	-				-0.5
3,247,620	-				+0.3
3,247,620	-				+1.1
3,247,620	-				-0.7
3,247,620	-				-0.2
3,247,620	-				+0.3
3,247,630	-				+0.2
3,247,639	-				-0.6
3,247,641	+				-1.1
3,247,716	+				-0.9
3,247,716	-				+0.3
3,247,735	+				-0.4
3,247,741	-				+1.1
3,247,748	+				+0.5
3,247,748	+				+1.2
3,247,748	+				-0.8
3,247,756	-				+0.1
3,247,758	+				-1.1
3,247,766	-				-2.0
3,247,776	-				-2.1
3,247,776	-				-1.3
3,247,778	+				+0.7
3,247,801	-				+0.2
3,247,827	-				-2.0
3,247,829	+				+0.0
3,247,829	+				+0.6
3,247,829	+				-1.3
3,247,829	+				+0.8
3,247,829	+				+1.1
3,247,829	+				-0.6
3,247,829	+				+0.7
3,247,829	+				+0.4
3,247,829	+				-0.3
3,247,829	+				-0.1
3,247,829	+				+0.4
3,247,829	+				-0.5
3,247,829	+				-0.0
3,247,829	+				-1.3
3,247,829	+				-0.7
3,247,829	+				+0.3
3,247,829	+				+0.4
3,247,829	+				-1.5
3,247,829	+				+0.0
3,247,829	+				-0.3
3,247,829	+				+0.0
3,247,829	+				-0.0
3,247,829	+				+0.5
3,247,829	+				-0.0
3,247,829	+				+0.2
3,247,837	-				-0.8
3,247,837	-				-0.6
3,247,837	-				-0.1
3,247,837	-				-0.5
3,247,837	-				-0.6
3,247,837	-				-1.9
3,247,837	-				+0.2
3,247,837	-				-1.8
3,247,837	-				-0.2
3,247,837	-				+0.0
3,247,837	-				-3.6
3,247,837	-				-0.9
3,247,837	-				-0.2
3,247,837	-				+0.3
3,247,837	-				+1.5
3,247,837	-				+1.0
3,247,837	-				-0.5
3,247,889	+				+1.5
3,247,904	+				-1.4
3,247,907	+				+0.4
3,247,912	-				+0.9
3,247,919	-				+1.3
3,247,919	-				-0.3
3,247,919	-				-0.7
3,247,925	+				-1.4
3,247,933	+				+0.6
3,247,949	+				-0.2
3,247,953	+				+0.5
3,247,953	+				-0.2
3,247,962	-				-0.1
3,247,963	+				-0.3
3,247,971	-				+0.5
3,247,971	-				-2.3
3,247,977	+				-1.2
3,247,985	+				-0.9
3,247,985	+				-0.5
3,247,985	-				+0.8
3,247,993	-				-0.6
3,247,993	-				-1.4
3,247,993	-				-0.3
3,247,993	-				-1.1
3,247,993	-				+0.2
3,248,011	-				-0.1
3,248,011	-				-0.2
3,248,016	-				+1.0
3,248,046	-				+0.7
3,248,047	-				-0.6
3,248,050	+				+0.2
3,248,050	+				-0.7
3,248,050	+				-0.5
3,248,050	+				+0.5
3,248,058	-				+1.5
3,248,058	-				-0.5
3,248,058	-				-1.0
3,248,096	+				-0.8
3,248,096	+				-1.9
3,248,096	+				-2.1
3,248,096	+				-1.4
3,248,096	+				+0.1
3,248,096	+				+0.1
3,248,096	+				-1.6
3,248,096	+				-0.5
3,248,096	+				-0.0
3,248,096	+				+1.0
3,248,098	+				-1.3
3,248,104	-				-0.4
3,248,104	-				-0.1
3,248,104	-				-2.2
3,248,104	-				-1.4
3,248,104	-				-0.1
3,248,104	-				-2.6
3,248,104	-				-0.8
3,248,104	-				-1.1
3,248,104	-				+0.3
3,248,104	-				+1.7
3,248,104	-				+0.9
3,248,104	-				+0.7
3,248,104	-				-0.8
3,248,141	+				-0.9
3,248,141	+				-0.2
3,248,141	+				-0.4
3,248,149	-				+0.3
3,248,149	-				+1.3
3,248,149	-				+0.7
3,248,149	-				+0.6
3,248,155	+				-0.2
3,248,176	-				-1.9
3,248,181	-				-1.2
3,248,199	+				-0.5
3,248,210	-				+1.1
3,248,257	-		GFF3186	0.18	+0.1
3,248,335	-		GFF3186	0.33	+0.2
3,248,337	+		GFF3186	0.33	-1.6
3,248,337	+		GFF3186	0.33	-0.8
3,248,345	-		GFF3186	0.35	+0.1
3,248,350	+		GFF3186	0.36	-1.3
3,248,353	-		GFF3186	0.36	-0.5
3,248,353	-		GFF3186	0.36	+0.2
3,248,355	+		GFF3186	0.36	+0.5
3,248,355	+		GFF3186	0.36	-0.3
3,248,359	-		GFF3186	0.37	-0.2
3,248,364	-		GFF3186	0.38	+0.6
3,248,376	+		GFF3186	0.40	-1.5
3,248,376	+		GFF3186	0.40	-0.5
3,248,379	+		GFF3186	0.41	-1.4
3,248,384	-		GFF3186	0.42	-1.0
3,248,387	-		GFF3186	0.42	-0.2
3,248,393	+		GFF3186	0.44	-0.7
3,248,401	+		GFF3186	0.45	+0.6
3,248,401	+		GFF3186	0.45	-1.3
3,248,401	-		GFF3186	0.45	-0.5
3,248,401	-		GFF3186	0.45	-0.4
3,248,401	-		GFF3186	0.45	-0.8
3,248,401	-		GFF3186	0.45	+0.3
3,248,401	-		GFF3186	0.45	+0.5
3,248,411	-		GFF3186	0.47	-0.9
3,248,411	-		GFF3186	0.47	-0.1
3,248,421	-		GFF3186	0.49	-0.1
3,248,426	+		GFF3186	0.50	-0.3
3,248,434	-		GFF3186	0.51	+0.0
3,248,436	+		GFF3186	0.51	-1.6
3,248,444	-		GFF3186	0.53	-1.4
3,248,458	+		GFF3186	0.56	+1.1
3,248,467	+		GFF3186	0.57	-0.0
3,248,468	+		GFF3186	0.57	+0.3
3,248,468	+		GFF3186	0.57	+0.3
3,248,474	+		GFF3186	0.59	+1.5
3,248,482	-		GFF3186	0.60	-0.4
3,248,487	+		GFF3186	0.61	-1.4
3,248,492	+		GFF3186	0.62	+0.3
3,248,492	+		GFF3186	0.62	+0.7
3,248,492	+		GFF3186	0.62	+0.0
3,248,492	+		GFF3186	0.62	+0.0
3,248,499	+		GFF3186	0.63	+0.4
3,248,500	-		GFF3186	0.63	+0.1
3,248,507	-		GFF3186	0.65	+0.1
3,248,507	-		GFF3186	0.65	+0.3
3,248,512	+		GFF3186	0.66	-0.2
3,248,518	+		GFF3186	0.67	-0.1
3,248,551	+		GFF3186	0.73	-1.0
3,248,552	+		GFF3186	0.73	-0.1
3,248,552	+		GFF3186	0.73	-1.1
3,248,552	+		GFF3186	0.73	-0.6
3,248,560	-		GFF3186	0.74	-1.6
3,248,560	-		GFF3186	0.74	-0.5
3,248,560	-		GFF3186	0.74	-0.4
3,248,560	-		GFF3186	0.74	-0.1
3,248,584	+		GFF3186	0.79	-0.3
3,248,584	+		GFF3186	0.79	-0.6
3,248,584	+		GFF3186	0.79	-0.1
3,248,584	+		GFF3186	0.79	-0.2
3,248,584	+		GFF3186	0.79	-0.1
3,248,584	+		GFF3186	0.79	-0.0
3,248,589	+		GFF3186	0.80	-1.6
3,248,589	+		GFF3186	0.80	-0.6
3,248,589	+		GFF3186	0.80	+0.3
3,248,589	+		GFF3186	0.80	-0.3
3,248,592	-		GFF3186	0.80	+1.3
3,248,592	-		GFF3186	0.80	-0.6
3,248,592	-		GFF3186	0.80	-0.4
3,248,592	-		GFF3186	0.80	-1.0
3,248,592	-		GFF3186	0.80	-0.9
3,248,597	-		GFF3186	0.81	-0.4
3,248,597	-		GFF3186	0.81	-0.4
3,248,598	+		GFF3186	0.81	-0.9
3,248,598	+		GFF3186	0.81	-1.0
3,248,598	+		GFF3186	0.81	+0.3
3,248,599	+		GFF3186	0.82	-0.2
3,248,606	-		GFF3186	0.83	-0.8
3,248,606	-		GFF3186	0.83	-0.7
3,248,621	-		GFF3186	0.86	+1.3
3,248,624	+		GFF3186	0.86	+0.5
3,248,624	+		GFF3186	0.86	-0.7
3,248,632	-		GFF3186	0.88	+0.4
3,248,632	-		GFF3186	0.88	-0.6
3,248,650	+				-1.5
3,248,661	-				-0.6
3,248,665	+				-0.6
3,248,673	-				-2.3
3,248,673	-				-0.4
3,248,693	+				+0.2
3,248,693	+				+0.6
3,248,693	+				-2.1
3,248,693	+				+2.2
3,248,701	-				-0.4
3,248,701	-				-0.8
3,248,712	+				-1.2
3,248,722	-				-1.4
3,248,738	-				+0.3
3,248,738	-				+0.4
3,248,748	-		GFF3187	0.13	+0.5
3,248,756	+		GFF3187	0.16	+2.0
3,248,759	-		GFF3187	0.17	-0.5
3,248,783	-		GFF3187	0.25	-0.3
3,248,800	-		GFF3187	0.31	+0.9
3,248,813	-		GFF3187	0.36	-1.0
3,248,818	-		GFF3187	0.38	-1.3
3,248,823	-		GFF3187	0.39	-0.8
3,248,837	-		GFF3187	0.44	-2.3
3,248,849	+		GFF3187	0.49	+2.0
3,248,862	+		GFF3187	0.53	-0.7
3,248,862	+		GFF3187	0.53	-1.6
3,248,872	+		GFF3187	0.57	+0.5
3,248,903	+		GFF3187	0.68	+0.6
3,248,910	-		GFF3187	0.70	+0.4
3,248,912	+		GFF3187	0.71	-1.7
3,248,922	+		GFF3187	0.74	+0.2
3,248,924	+		GFF3187	0.75	-2.2
3,248,924	+		GFF3187	0.75	-0.2
3,248,924	+		GFF3187	0.75	+0.5
3,248,924	+		GFF3187	0.75	-0.7
3,248,924	+		GFF3187	0.75	+0.6
3,248,928	+		GFF3187	0.77	+0.5
3,248,930	-		GFF3187	0.77	-0.4
3,248,930	-		GFF3187	0.77	-2.3
3,248,930	-		GFF3187	0.77	-1.3
3,248,930	-		GFF3187	0.77	-0.2
3,248,930	-		GFF3187	0.77	+0.8
3,248,930	-		GFF3187	0.77	-0.7
3,248,932	-		GFF3187	0.78	-0.7
3,248,932	-		GFF3187	0.78	+0.5
3,248,932	-		GFF3187	0.78	+0.6
3,248,932	-		GFF3187	0.78	+0.3
3,248,932	-		GFF3187	0.78	-0.8
3,248,942	+		GFF3187	0.82	+0.0
3,248,950	-		GFF3187	0.84	-0.6
3,248,955	+		GFF3187	0.86	+0.3
3,248,969	-				-1.3
3,248,972	+				+0.6
3,248,978	+				-1.1
3,248,979	+				-2.5
3,248,980	-				+1.1
3,249,044	-				-0.6
3,249,044	-				-1.1
3,249,044	-				+0.3
3,249,044	-				-0.1
3,249,044	-				-0.6
3,249,044	-				+1.3
3,249,065	-				-0.2
3,249,065	-				+0.3
3,249,106	+				-1.1
3,249,111	+				+1.1
3,249,120	+				+0.2
3,249,120	+				+0.2
3,249,128	+				-0.8
3,249,128	-				+1.2
3,249,130	+				-0.8
3,249,130	+				-0.7
3,249,130	+				-0.7
3,249,130	+				-0.8
3,249,130	+				+1.0
3,249,138	-				-0.1
3,249,150	+				+0.3
3,249,152	+				-0.8
3,249,152	+				+0.3
3,249,152	+				+0.3
3,249,152	+				-0.0
3,249,152	+				-0.3
3,249,152	+				+1.3
3,249,152	+				-0.3
3,249,152	+				-0.9
3,249,152	+				+0.3
3,249,157	+				-1.5
3,249,158	+				-1.6
3,249,160	-				+0.1
3,249,160	-				-1.4
3,249,160	-				-1.7
3,249,160	-				-1.0
3,249,160	-				-0.2
3,249,160	-				-2.1
3,249,183	-				-1.4
3,249,200	+				+0.2
3,249,295	-		GFF3188	0.24	+0.6
3,249,332	-		GFF3188	0.32	-1.5
3,249,576	-		GFF3188	0.81	-1.3
3,249,581	-		GFF3188	0.82	-1.7
3,249,642	+				+0.8
3,249,642	+				+1.4
3,249,663	+				-0.2
3,249,663	+				-0.4
3,249,664	-				-1.0
3,249,666	-				-0.6
3,249,666	-				+0.7
3,249,666	-				-0.1
3,249,666	-				-0.8
3,249,671	-				-0.1
3,249,671	-				+0.8
3,249,671	-				+0.4
3,249,679	-				+0.4
3,249,694	+				-1.4
3,249,694	+				-0.7