Strain Fitness in Sphingobium sp. HT1-2 around GFF3185

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,246,388	+		GFF3183	0.62	-3.1
3,246,388	+		GFF3183	0.62	+0.2
3,246,388	+		GFF3183	0.62	-2.2
3,246,388	+		GFF3183	0.62	-0.7
3,246,388	+		GFF3183	0.62	-0.5
3,246,396	-		GFF3183	0.63	+0.3
3,246,429	+		GFF3183	0.66	-1.1
3,246,429	+		GFF3183	0.66	-0.2
3,246,432	-		GFF3183	0.66	+1.3
3,246,437	-		GFF3183	0.67	+0.2
3,246,437	-		GFF3183	0.67	-1.8
3,246,506	+		GFF3183	0.74	-1.6
3,246,512	-		GFF3183	0.74	-0.8
3,246,520	+		GFF3183	0.75	+1.5
3,246,561	+		GFF3183	0.79	-0.5
3,246,569	-		GFF3183	0.80	-1.0
3,246,575	+		GFF3183	0.80	-0.4
3,246,575	+		GFF3183	0.80	+0.6
3,246,583	-		GFF3183	0.81	+0.5
3,246,583	-		GFF3183	0.81	-0.6
3,246,583	-		GFF3183	0.81	+1.6
3,246,585	+		GFF3183	0.81	-0.9
3,246,596	-		GFF3183	0.82	-1.1
3,246,596	-		GFF3183	0.82	-0.4
3,246,609	+		GFF3183	0.84	+0.6
3,246,609	+		GFF3183	0.84	-0.0
3,246,617	-		GFF3183	0.84	+1.3
3,246,617	-		GFF3183	0.84	+0.5
3,246,651	+		GFF3183	0.88	+0.7
3,246,691	-				+0.3
3,246,691	-				-0.6
3,246,696	-				-0.1
3,246,696	-				-0.1
3,246,701	+				-0.5
3,246,757	+				+1.0
3,246,757	+				-0.5
3,246,762	+				-1.7
3,246,762	+				-0.9
3,246,767	+				+1.0
3,246,767	+				-0.3
3,246,767	+				-0.9
3,246,767	+				-0.2
3,246,767	+				-0.2
3,246,767	+				+0.7
3,246,767	+				-0.1
3,246,770	-				+0.2
3,246,770	-				-1.5
3,246,770	-				-1.1
3,246,775	-				-0.7
3,246,775	-				-0.5
3,246,775	-				+0.2
3,246,775	-				-0.4
3,246,775	-				+0.1
3,246,775	-				-0.9
3,246,777	+				-1.9
3,246,777	+				-1.3
3,246,777	+				-3.1
3,246,777	+				+0.2
3,246,777	+				-0.6
3,246,777	+				-0.1
3,246,777	+				+1.3
3,246,785	-				+1.4
3,246,785	-				-1.4
3,246,785	-				-0.1
3,246,785	-				-0.1
3,246,785	-				+0.4
3,246,785	-				+0.9
3,246,785	-				+0.3
3,246,785	-				-0.0
3,246,786	+				+0.3
3,246,787	+				-1.9
3,246,790	-				+1.1
3,246,807	-				-1.0
3,246,941	+		GFF3184	0.16	-2.5
3,246,953	-		GFF3184	0.18	-1.5
3,247,002	+		GFF3184	0.29	-1.4
3,247,002	+		GFF3184	0.29	-0.7
3,247,002	+		GFF3184	0.29	-2.1
3,247,010	-		GFF3184	0.31	-0.2
3,247,010	-		GFF3184	0.31	+0.3
3,247,010	-		GFF3184	0.31	+1.0
3,247,010	-		GFF3184	0.31	+0.5
3,247,010	-		GFF3184	0.31	-1.0
3,247,094	-		GFF3184	0.50	+0.1
3,247,100	-		GFF3184	0.51	+0.8
3,247,108	+		GFF3184	0.53	+0.9
3,247,117	+		GFF3184	0.55	+0.5
3,247,121	+		GFF3184	0.56	+0.0
3,247,129	+		GFF3184	0.58	-1.2
3,247,129	+		GFF3184	0.58	-1.4
3,247,129	+		GFF3184	0.58	-0.7
3,247,129	+		GFF3184	0.58	+1.4
3,247,129	-		GFF3184	0.58	-2.2
3,247,131	+		GFF3184	0.58	+1.0
3,247,137	-		GFF3184	0.59	-0.3
3,247,137	-		GFF3184	0.59	+0.5
3,247,139	-		GFF3184	0.60	-0.3
3,247,139	-		GFF3184	0.60	-0.9
3,247,139	-		GFF3184	0.60	+0.1
3,247,141	+		GFF3184	0.60	-1.5
3,247,149	-		GFF3184	0.62	+0.8
3,247,149	-		GFF3184	0.62	-0.1
3,247,149	-		GFF3184	0.62	-0.9
3,247,149	-		GFF3184	0.62	+0.9
3,247,149	-		GFF3184	0.62	-1.1
3,247,149	-		GFF3184	0.62	-1.3
3,247,149	-		GFF3184	0.62	-1.7
3,247,149	-		GFF3184	0.62	-1.6
3,247,154	-		GFF3184	0.63	+1.2
3,247,158	-		GFF3184	0.64	-0.4
3,247,158	-		GFF3184	0.64	-0.7
3,247,160	+		GFF3184	0.64	-1.9
3,247,168	-		GFF3184	0.66	+0.9
3,247,197	-		GFF3184	0.73	-2.4
3,247,215	-		GFF3184	0.77	-0.2
3,247,225	+		GFF3184	0.79	+0.7
3,247,230	+		GFF3184	0.80	+0.1
3,247,230	+		GFF3184	0.80	-2.3
3,247,230	+		GFF3184	0.80	+0.1
3,247,231	+		GFF3184	0.80	+1.0
3,247,233	-		GFF3184	0.81	-0.2
3,247,233	-		GFF3184	0.81	+0.3
3,247,238	-		GFF3184	0.82	-0.4
3,247,239	-		GFF3184	0.82	+0.1
3,247,239	-		GFF3184	0.82	+0.7
3,247,239	-		GFF3184	0.82	+0.0
3,247,248	-		GFF3184	0.84	+0.7
3,247,254	+		GFF3184	0.85	-0.8
3,247,254	+		GFF3184	0.85	+0.1
3,247,254	+		GFF3184	0.85	+0.7
3,247,259	+		GFF3184	0.86	+0.0
3,247,259	+		GFF3184	0.86	+1.4
3,247,259	+		GFF3184	0.86	-2.1
3,247,262	-		GFF3184	0.87	-0.4
3,247,262	-		GFF3184	0.87	-0.9
3,247,262	-		GFF3184	0.87	-2.6
3,247,262	-		GFF3184	0.87	+0.7
3,247,262	-		GFF3184	0.87	+1.0
3,247,266	+		GFF3184	0.88	+0.2
3,247,268	+		GFF3184	0.88	-0.7
3,247,274	-		GFF3184	0.90	+0.5
3,247,305	+				-0.9
3,247,347	-				+0.8
3,247,359	+				-0.5
3,247,360	+				+0.2
3,247,360	+				+0.2
3,247,360	-				+0.3
3,247,367	+				-1.0
3,247,374	+				-0.2
3,247,399	+		GFF3185	0.23	-1.3
3,247,401	-		GFF3185	0.25	+0.2
3,247,409	-		GFF3185	0.32	+0.2
3,247,421	-		GFF3185	0.42	+0.4
3,247,467	-		GFF3185	0.80	+0.2
3,247,471	+		GFF3185	0.83	-0.1
3,247,472	-		GFF3185	0.84	-1.2
3,247,475	+		GFF3185	0.87	+0.3
3,247,482	+				+0.7
3,247,482	+				-2.1
3,247,482	+				-1.2
3,247,482	+				-0.1
3,247,482	+				-0.7
3,247,482	+				-2.1
3,247,482	+				+0.2
3,247,482	+				-1.1
3,247,482	+				+0.3
3,247,482	+				-0.9
3,247,488	-				-1.0
3,247,488	-				+0.9
3,247,490	-				-0.5
3,247,490	-				+0.3
3,247,490	-				-1.3
3,247,490	-				-0.5
3,247,490	-				+0.7
3,247,505	-				-0.9
3,247,529	+				+0.4
3,247,529	+				+0.3
3,247,544	+				+0.5
3,247,556	+				-0.6
3,247,561	+				-1.4
3,247,561	+				-1.9
3,247,561	+				+1.2
3,247,561	+				+0.4
3,247,566	+				+1.1
3,247,566	+				-0.1
3,247,571	+				-0.4
3,247,595	+				-1.1
3,247,610	-				+0.1
3,247,611	+				+1.7
3,247,611	+				-1.8
3,247,612	+				+0.2
3,247,612	+				+1.1
3,247,612	+				+0.7
3,247,612	+				-0.1
3,247,612	+				-1.6
3,247,612	+				-0.9
3,247,612	+				+0.5
3,247,613	+				+0.1
3,247,620	-				-0.5
3,247,620	-				+0.3
3,247,620	-				+1.1
3,247,620	-				-0.7
3,247,620	-				-0.2
3,247,620	-				+0.3
3,247,630	-				+0.2
3,247,639	-				-0.6
3,247,641	+				-1.1
3,247,716	+				-0.9
3,247,716	-				+0.3
3,247,735	+				-0.4
3,247,741	-				+1.1
3,247,748	+				+0.5
3,247,748	+				+1.2
3,247,748	+				-0.8
3,247,756	-				+0.1
3,247,758	+				-1.1
3,247,766	-				-2.0
3,247,776	-				-2.1
3,247,776	-				-1.3
3,247,778	+				+0.7
3,247,801	-				+0.2
3,247,827	-				-2.0
3,247,829	+				+0.0
3,247,829	+				+0.6
3,247,829	+				-1.3
3,247,829	+				+0.8
3,247,829	+				+1.1
3,247,829	+				-0.6
3,247,829	+				+0.7
3,247,829	+				+0.4
3,247,829	+				-0.3
3,247,829	+				-0.1
3,247,829	+				+0.4
3,247,829	+				-0.5
3,247,829	+				-0.0
3,247,829	+				-1.3
3,247,829	+				-0.7
3,247,829	+				+0.3
3,247,829	+				+0.4
3,247,829	+				-1.5
3,247,829	+				+0.0
3,247,829	+				-0.3
3,247,829	+				+0.0
3,247,829	+				-0.0
3,247,829	+				+0.5
3,247,829	+				-0.0
3,247,829	+				+0.2
3,247,837	-				-0.8
3,247,837	-				-0.6
3,247,837	-				-0.1
3,247,837	-				-0.5
3,247,837	-				-0.6
3,247,837	-				-1.9
3,247,837	-				+0.2
3,247,837	-				-1.8
3,247,837	-				-0.2
3,247,837	-				+0.0
3,247,837	-				-3.6
3,247,837	-				-0.9
3,247,837	-				-0.2
3,247,837	-				+0.3
3,247,837	-				+1.5
3,247,837	-				+1.0
3,247,837	-				-0.5
3,247,889	+				+1.5
3,247,904	+				-1.4
3,247,907	+				+0.4
3,247,912	-				+0.9
3,247,919	-				+1.3
3,247,919	-				-0.3
3,247,919	-				-0.7
3,247,925	+				-1.4
3,247,933	+				+0.6
3,247,949	+				-0.2
3,247,953	+				+0.5
3,247,953	+				-0.2
3,247,962	-				-0.1
3,247,963	+				-0.3
3,247,971	-				+0.5
3,247,971	-				-2.3
3,247,977	+				-1.2
3,247,985	+				-0.9
3,247,985	+				-0.5
3,247,985	-				+0.8
3,247,993	-				-0.6
3,247,993	-				-1.4
3,247,993	-				-0.3
3,247,993	-				-1.1
3,247,993	-				+0.2
3,248,011	-				-0.1
3,248,011	-				-0.2
3,248,016	-				+1.0
3,248,046	-				+0.7
3,248,047	-				-0.6
3,248,050	+				+0.2
3,248,050	+				-0.7
3,248,050	+				-0.5
3,248,050	+				+0.5
3,248,058	-				+1.5
3,248,058	-				-0.5
3,248,058	-				-1.0
3,248,096	+				-0.8
3,248,096	+				-1.9
3,248,096	+				-2.1
3,248,096	+				-1.4
3,248,096	+				+0.1
3,248,096	+				+0.1
3,248,096	+				-1.6
3,248,096	+				-0.5
3,248,096	+				-0.0
3,248,096	+				+1.0
3,248,098	+				-1.3
3,248,104	-				-0.4
3,248,104	-				-0.1
3,248,104	-				-2.2
3,248,104	-				-1.4
3,248,104	-				-0.1
3,248,104	-				-2.6
3,248,104	-				-0.8
3,248,104	-				-1.1
3,248,104	-				+0.3
3,248,104	-				+1.7
3,248,104	-				+0.9
3,248,104	-				+0.7
3,248,104	-				-0.8
3,248,141	+				-0.9
3,248,141	+				-0.2
3,248,141	+				-0.4
3,248,149	-				+0.3
3,248,149	-				+1.3
3,248,149	-				+0.7
3,248,149	-				+0.6
3,248,155	+				-0.2
3,248,176	-				-1.9
3,248,181	-				-1.2
3,248,199	+				-0.5
3,248,210	-				+1.1
3,248,257	-		GFF3186	0.18	+0.1
3,248,335	-		GFF3186	0.33	+0.2
3,248,337	+		GFF3186	0.33	-1.6
3,248,337	+		GFF3186	0.33	-0.8
3,248,345	-		GFF3186	0.35	+0.1
3,248,350	+		GFF3186	0.36	-1.3
3,248,353	-		GFF3186	0.36	-0.5
3,248,353	-		GFF3186	0.36	+0.2
3,248,355	+		GFF3186	0.36	+0.5
3,248,355	+		GFF3186	0.36	-0.3
3,248,359	-		GFF3186	0.37	-0.2
3,248,364	-		GFF3186	0.38	+0.6
3,248,376	+		GFF3186	0.40	-1.5
3,248,376	+		GFF3186	0.40	-0.5
3,248,379	+		GFF3186	0.41	-1.4
3,248,384	-		GFF3186	0.42	-1.0
3,248,387	-		GFF3186	0.42	-0.2
3,248,393	+		GFF3186	0.44	-0.7
3,248,401	+		GFF3186	0.45	+0.6
3,248,401	+		GFF3186	0.45	-1.3
3,248,401	-		GFF3186	0.45	-0.5
3,248,401	-		GFF3186	0.45	-0.4
3,248,401	-		GFF3186	0.45	-0.8
3,248,401	-		GFF3186	0.45	+0.3
3,248,401	-		GFF3186	0.45	+0.5
3,248,411	-		GFF3186	0.47	-0.9
3,248,411	-		GFF3186	0.47	-0.1
3,248,421	-		GFF3186	0.49	-0.1
3,248,426	+		GFF3186	0.50	-0.3
3,248,434	-		GFF3186	0.51	+0.0
3,248,436	+		GFF3186	0.51	-1.6
3,248,444	-		GFF3186	0.53	-1.4
3,248,458	+		GFF3186	0.56	+1.1
3,248,467	+		GFF3186	0.57	-0.0
3,248,468	+		GFF3186	0.57	+0.3
3,248,468	+		GFF3186	0.57	+0.3
3,248,474	+		GFF3186	0.59	+1.5
3,248,482	-		GFF3186	0.60	-0.4
3,248,487	+		GFF3186	0.61	-1.4