Strain Fitness in Sphingobium sp. HT1-2 around GFF3175

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,238,886	+		GFF3174	0.18	-0.9
3,238,891	+		GFF3174	0.19	+0.6
3,238,899	-		GFF3174	0.19	+0.1
3,238,899	-		GFF3174	0.19	+0.1
3,238,940	-		GFF3174	0.23	+1.1
3,238,946	-		GFF3174	0.23	-0.6
3,238,947	+		GFF3174	0.24	+0.2
3,238,947	+		GFF3174	0.24	+1.0
3,238,952	+		GFF3174	0.24	+1.0
3,238,955	-		GFF3174	0.24	-0.6
3,238,982	+		GFF3174	0.27	+0.1
3,239,023	-		GFF3174	0.30	+0.3
3,239,074	+		GFF3174	0.35	+0.2
3,239,098	-		GFF3174	0.37	+1.0
3,239,098	-		GFF3174	0.37	+0.3
3,239,098	-		GFF3174	0.37	-0.1
3,239,098	-		GFF3174	0.37	-0.3
3,239,098	-		GFF3174	0.37	+0.1
3,239,125	-		GFF3174	0.39	-1.1
3,239,133	-		GFF3174	0.40	+0.1
3,239,149	+		GFF3174	0.41	+0.8
3,239,149	+		GFF3174	0.41	+0.5
3,239,166	+		GFF3174	0.43	-2.3
3,239,208	+		GFF3174	0.47	-0.7
3,239,216	-		GFF3174	0.47	-1.3
3,239,223	+		GFF3174	0.48	-1.8
3,239,231	-		GFF3174	0.49	-1.5
3,239,250	-		GFF3174	0.50	-0.0
3,239,251	+		GFF3174	0.50	-1.1
3,239,254	-		GFF3174	0.51	+1.5
3,239,259	-		GFF3174	0.51	+0.9
3,239,263	+		GFF3174	0.51	+0.8
3,239,263	+		GFF3174	0.51	-2.5
3,239,263	+		GFF3174	0.51	-0.0
3,239,271	-		GFF3174	0.52	+0.1
3,239,313	+		GFF3174	0.56	+1.4
3,239,345	+		GFF3174	0.59	+0.3
3,239,350	+		GFF3174	0.59	-1.0
3,239,350	+		GFF3174	0.59	-0.4
3,239,352	+		GFF3174	0.59	-1.6
3,239,355	+		GFF3174	0.60	-1.5
3,239,358	-		GFF3174	0.60	+0.3
3,239,363	-		GFF3174	0.60	+0.1
3,239,363	-		GFF3174	0.60	-1.9
3,239,363	-		GFF3174	0.60	-0.6
3,239,368	-		GFF3174	0.61	-0.0
3,239,373	-		GFF3174	0.61	-1.2
3,239,373	-		GFF3174	0.61	+1.1
3,239,396	+		GFF3174	0.63	+0.1
3,239,404	-		GFF3174	0.64	-0.8
3,239,420	-		GFF3174	0.65	+0.9
3,239,426	+		GFF3174	0.66	-1.5
3,239,459	+		GFF3174	0.69	+0.0
3,239,503	-		GFF3174	0.73	-0.6
3,239,503	-		GFF3174	0.73	+0.7
3,239,503	-		GFF3174	0.73	+0.3
3,239,504	-		GFF3174	0.73	-0.3
3,239,505	+		GFF3174	0.73	-0.6
3,239,505	+		GFF3174	0.73	+0.3
3,239,505	+		GFF3174	0.73	+0.6
3,239,507	+		GFF3174	0.73	-0.9
3,239,508	-		GFF3174	0.73	-0.5
3,239,513	-		GFF3174	0.73	+0.6
3,239,530	-		GFF3174	0.75	-1.0
3,239,530	-		GFF3174	0.75	+0.3
3,239,537	+		GFF3174	0.76	-0.6
3,239,594	+		GFF3174	0.81	+0.2
3,239,599	+		GFF3174	0.81	+0.7
3,239,602	-		GFF3174	0.81	-0.5
3,239,602	-		GFF3174	0.81	-1.1
3,239,602	-		GFF3174	0.81	-0.3
3,239,602	-		GFF3174	0.81	-0.6
3,239,607	-		GFF3174	0.82	-0.7
3,239,619	-		GFF3174	0.83	-1.3
3,239,644	+		GFF3174	0.85	+1.4
3,239,652	-		GFF3174	0.86	-0.9
3,239,652	-		GFF3174	0.86	-0.8
3,239,665	+		GFF3174	0.87	-0.2
3,239,673	-		GFF3174	0.88	-1.1
3,239,692	-		GFF3174	0.89	+0.4
3,239,718	+				-0.6
3,239,737	-				+0.9
3,239,756	+				+0.1
3,239,763	+				+0.5
3,239,764	-				-0.8
3,239,764	-				+0.2
3,239,765	-				-1.9
3,239,808	-				-0.0
3,239,823	+				+0.8
3,239,828	+				+1.3
3,239,831	-				+0.7
3,239,833	+				-1.5
3,239,845	+				-1.3
3,239,846	+				+0.6
3,239,846	+				+0.4
3,239,853	-				-0.5
3,239,853	-				-1.4
3,239,853	-				+0.3
3,239,854	-				-2.2
3,239,854	-				-0.6
3,239,854	-				-1.8
3,239,854	-				-1.7
3,239,854	-				+0.3
3,239,854	-				-0.7
3,239,868	+				-1.0
3,239,877	-				-0.1
3,239,879	+				+0.1
3,239,881	-				-1.0
3,239,918	-				-0.2
3,239,918	-				-1.2
3,239,918	-				-0.2
3,239,943	+				+0.0
3,239,943	+				-0.7
3,239,943	+				-1.1
3,239,943	+				-0.7
3,239,943	+				+0.7
3,239,951	-				-0.5
3,239,951	-				-0.3
3,239,960	+				-1.3
3,239,977	+				-1.0
3,239,991	+				+0.3
3,240,044	+		GFF3175	0.13	-1.4
3,240,044	+		GFF3175	0.13	+0.4
3,240,044	+		GFF3175	0.13	+0.7
3,240,044	+		GFF3175	0.13	-0.8
3,240,044	+		GFF3175	0.13	-0.3
3,240,044	+		GFF3175	0.13	+0.6
3,240,044	+		GFF3175	0.13	-0.6
3,240,050	+		GFF3175	0.14	-1.3
3,240,052	-		GFF3175	0.14	-0.6
3,240,052	-		GFF3175	0.14	-0.4
3,240,052	-		GFF3175	0.14	+1.2
3,240,052	-		GFF3175	0.14	+0.1
3,240,052	-		GFF3175	0.14	+0.7
3,240,052	-		GFF3175	0.14	+1.4
3,240,052	-		GFF3175	0.14	-0.3
3,240,062	-		GFF3175	0.15	-1.7
3,240,090	-		GFF3175	0.17	+0.0
3,240,092	-		GFF3175	0.17	+1.3
3,240,092	-		GFF3175	0.17	-0.9
3,240,132	+		GFF3175	0.21	-1.1
3,240,158	+		GFF3175	0.23	+0.7
3,240,165	+		GFF3175	0.23	+0.6
3,240,173	-		GFF3175	0.24	-1.3
3,240,197	+		GFF3175	0.26	-1.3
3,240,197	+		GFF3175	0.26	+0.3
3,240,197	+		GFF3175	0.26	+0.6
3,240,205	-		GFF3175	0.27	+0.2
3,240,205	-		GFF3175	0.27	-0.7
3,240,211	-		GFF3175	0.27	+0.7
3,240,215	-		GFF3175	0.27	+0.1
3,240,219	+		GFF3175	0.28	+1.6
3,240,219	+		GFF3175	0.28	+1.4
3,240,219	+		GFF3175	0.28	+0.6
3,240,219	+		GFF3175	0.28	+0.4
3,240,219	+		GFF3175	0.28	-1.0
3,240,219	+		GFF3175	0.28	+0.8
3,240,219	+		GFF3175	0.28	-0.4
3,240,222	-		GFF3175	0.28	-0.3
3,240,222	-		GFF3175	0.28	+1.2
3,240,222	-		GFF3175	0.28	-0.1
3,240,222	-		GFF3175	0.28	-0.7
3,240,227	-		GFF3175	0.28	+0.3
3,240,227	-		GFF3175	0.28	-1.6
3,240,233	+		GFF3175	0.29	-0.3
3,240,233	-		GFF3175	0.29	-0.6
3,240,241	-		GFF3175	0.30	-0.5
3,240,241	-		GFF3175	0.30	-0.3
3,240,286	+		GFF3175	0.33	+0.0
3,240,294	-		GFF3175	0.34	-1.1
3,240,294	-		GFF3175	0.34	-2.2
3,240,301	+		GFF3175	0.35	+0.4
3,240,330	-		GFF3175	0.37	-0.5
3,240,335	+		GFF3175	0.37	-1.2
3,240,353	-		GFF3175	0.39	+0.7
3,240,356	+		GFF3175	0.39	-1.4
3,240,370	-		GFF3175	0.40	-1.4
3,240,378	-		GFF3175	0.41	+0.2
3,240,389	+		GFF3175	0.42	+0.6
3,240,426	-		GFF3175	0.45	+0.6
3,240,434	+		GFF3175	0.46	+1.2
3,240,442	-		GFF3175	0.46	+0.4
3,240,442	-		GFF3175	0.46	-0.1
3,240,442	-		GFF3175	0.46	+0.4
3,240,442	-		GFF3175	0.46	+0.6
3,240,442	-		GFF3175	0.46	-0.2
3,240,465	-		GFF3175	0.48	+0.4
3,240,491	+		GFF3175	0.50	-0.3
3,240,501	+		GFF3175	0.51	-0.3
3,240,539	+		GFF3175	0.54	-1.5
3,240,539	+		GFF3175	0.54	-0.2
3,240,547	+		GFF3175	0.55	-0.4
3,240,547	-		GFF3175	0.55	+0.8
3,240,547	-		GFF3175	0.55	-1.1
3,240,548	-		GFF3175	0.55	-1.3
3,240,548	-		GFF3175	0.55	-0.1
3,240,555	-		GFF3175	0.56	-1.5
3,240,555	-		GFF3175	0.56	+0.1
3,240,557	+		GFF3175	0.56	-1.1
3,240,576	-		GFF3175	0.57	-0.7
3,240,600	+		GFF3175	0.59	-1.6
3,240,624	+		GFF3175	0.61	-0.1
3,240,627	-		GFF3175	0.62	+1.6
3,240,632	-		GFF3175	0.62	-0.3
3,240,635	+		GFF3175	0.62	-0.3
3,240,654	-		GFF3175	0.64	-0.3
3,240,664	+		GFF3175	0.65	-2.0
3,240,664	+		GFF3175	0.65	+0.8
3,240,667	-		GFF3175	0.65	+0.3
3,240,685	-		GFF3175	0.66	-1.4
3,240,694	+		GFF3175	0.67	+0.2
3,240,696	+		GFF3175	0.67	-0.7
3,240,707	-		GFF3175	0.68	-0.0
3,240,717	-		GFF3175	0.69	-0.7
3,240,732	+		GFF3175	0.70	+0.2
3,240,737	+		GFF3175	0.71	-2.9
3,240,737	+		GFF3175	0.71	+0.9
3,240,747	+		GFF3175	0.72	+0.8
3,240,794	+		GFF3175	0.75	-0.6
3,240,794	+		GFF3175	0.75	-1.5
3,240,802	-		GFF3175	0.76	-1.1
3,240,813	+		GFF3175	0.77	+0.3
3,240,813	+		GFF3175	0.77	-0.6
3,240,814	-		GFF3175	0.77	+0.5
3,240,816	+		GFF3175	0.77	-0.9
3,240,816	-		GFF3175	0.77	-1.1
3,240,847	+		GFF3175	0.80	+0.8
3,240,853	-		GFF3175	0.80	-0.0
3,240,853	-		GFF3175	0.80	-1.7
3,240,860	+		GFF3175	0.81	-0.6
3,240,860	+		GFF3175	0.81	-0.0
3,240,875	+		GFF3175	0.82	+0.9
3,240,890	+		GFF3175	0.83	+0.2
3,240,898	-		GFF3175	0.84	+0.1
3,240,898	-		GFF3175	0.84	-0.7
3,240,898	-		GFF3175	0.84	-1.4
3,240,900	+		GFF3175	0.84	+0.4
3,240,903	-		GFF3175	0.84	-2.0
3,240,903	-		GFF3175	0.84	-1.0
3,240,903	-		GFF3175	0.84	-0.0
3,240,914	+		GFF3175	0.85	+0.2
3,240,929	+		GFF3175	0.87	+0.4
3,240,937	+		GFF3175	0.87	-1.8
3,240,937	-		GFF3175	0.87	+0.6
3,240,937	-		GFF3175	0.87	+0.0
3,240,942	-		GFF3175	0.88	+1.2
3,240,944	+		GFF3175	0.88	+0.6
3,240,945	-		GFF3175	0.88	-0.7
3,240,947	-		GFF3175	0.88	-0.4
3,240,981	+				+0.8
3,240,981	+				+0.7
3,240,981	+				+0.6
3,240,985	-				-1.3
3,240,986	+				-1.5
3,240,989	-				-0.9
3,240,999	-				-1.8
3,241,009	-				-1.4
3,241,016	+				+0.0
3,241,024	-				+0.4
3,241,045	+				+1.1
3,241,045	+				+0.3
3,241,047	+				+0.5
3,241,047	+				-0.6
3,241,053	-				+0.3
3,241,053	-				+0.5
3,241,053	-				+0.1
3,241,053	-				-2.1
3,241,053	-				+0.0
3,241,055	-				+0.5
3,241,055	-				-0.6
3,241,065	-				-0.3
3,241,070	+				-0.3
3,241,070	+				+0.2
3,241,070	+				+1.0
3,241,078	-				-1.7
3,241,078	-				+0.7
3,241,088	-				+1.7
3,241,109	-				-0.8
3,241,109	-				+1.0
3,241,126	+				+0.6
3,241,144	-				+0.3
3,241,146	-				+0.2
3,241,157	-				-1.0
3,241,169	+				+1.2
3,241,169	+				+0.9
3,241,169	+				+1.4
3,241,169	+				-0.6
3,241,169	+				-1.2
3,241,169	+				-0.8
3,241,169	+				-1.1
3,241,169	+				+1.1
3,241,169	+				+0.1
3,241,169	+				-0.5
3,241,169	+				-1.3
3,241,169	+				+0.2
3,241,169	+				-1.0
3,241,169	+				+1.3
3,241,169	+				+0.4
3,241,169	+				-1.1
3,241,169	+				-0.3
3,241,169	+				-0.8
3,241,169	+				+0.3
3,241,169	+				-0.1
3,241,169	+				-0.1
3,241,169	+				+0.2
3,241,169	+				-0.6
3,241,169	+				-1.5
3,241,170	+				-0.2
3,241,177	-		GFF3176	0.11	-0.1
3,241,177	-		GFF3176	0.11	-3.0
3,241,177	-		GFF3176	0.11	+0.4
3,241,177	-		GFF3176	0.11	-0.9
3,241,177	-		GFF3176	0.11	-0.5
3,241,177	-		GFF3176	0.11	+0.3
3,241,177	-		GFF3176	0.11	-1.3
3,241,177	-		GFF3176	0.11	+1.6
3,241,177	-		GFF3176	0.11	+0.3
3,241,177	-		GFF3176	0.11	+0.1
3,241,177	-		GFF3176	0.11	-1.1
3,241,177	-		GFF3176	0.11	-0.3
3,241,177	-		GFF3176	0.11	-0.9
3,241,177	-		GFF3176	0.11	+0.6
3,241,177	-		GFF3176	0.11	-0.1
3,241,177	-		GFF3176	0.11	+0.6
3,241,177	-		GFF3176	0.11	-1.2
3,241,177	-		GFF3176	0.11	+0.9
3,241,183	+		GFF3176	0.13	-0.9
3,241,183	+		GFF3176	0.13	-0.8
3,241,191	-		GFF3176	0.16	-0.0
3,241,201	-		GFF3176	0.19	-0.5
3,241,220	+		GFF3176	0.24	+0.3
3,241,220	-		GFF3176	0.24	-0.5
3,241,233	-		GFF3176	0.28	-1.3
3,241,235	+		GFF3176	0.29	+0.4
3,241,258	-		GFF3176	0.36	-0.3
3,241,292	+		GFF3176	0.46	-0.4
3,241,359	+		GFF3176	0.67	-0.5
3,241,367	-		GFF3176	0.69	-1.6
3,241,376	-		GFF3176	0.72	+0.9
3,241,432	-		GFF3176	0.89	-0.1
3,241,437	-				-0.5
3,241,483	-				-0.9
3,241,495	+				+0.4
3,241,503	-				-0.8
3,241,516	-				-0.6
3,241,542	+		GFF3177	0.13	-2.1
3,241,542	+		GFF3177	0.13	+0.8
3,241,550	-		GFF3177	0.14	-0.1
3,241,559	+		GFF3177	0.16	+0.6
3,241,592	+		GFF3177	0.22	-2.1
3,241,600	-		GFF3177	0.23	-1.7
3,241,600	-		GFF3177	0.23	-1.1
3,241,600	-		GFF3177	0.23	+0.9
3,241,600	-		GFF3177	0.23	+0.1
3,241,611	+		GFF3177	0.25	+1.2
3,241,612	-		GFF3177	0.26	+0.7
3,241,619	+		GFF3177	0.27	+0.6
3,241,627	-		GFF3177	0.28	-1.1
3,241,659	+		GFF3177	0.34	+0.0
3,241,671	-		GFF3177	0.36	+0.2
3,241,677	-		GFF3177	0.38	-0.1
3,241,717	+		GFF3177	0.45	+0.8
3,241,717	+		GFF3177	0.45	-1.3
3,241,724	+		GFF3177	0.46	+1.1
3,241,725	-		GFF3177	0.46	+0.3
3,241,725	-		GFF3177	0.46	-1.1
3,241,739	+		GFF3177	0.49	-0.6
3,241,742	-		GFF3177	0.49	-1.4
3,241,760	+		GFF3177	0.53	+0.0
3,241,780	+		GFF3177	0.56	+0.3
3,241,785	-		GFF3177	0.57	-0.1
3,241,823	-		GFF3177	0.64	+0.5
3,241,887	+		GFF3177	0.76	-0.0
3,241,888	-		GFF3177	0.76	+0.7
3,241,890	-		GFF3177	0.77	+0.9
3,241,895	+		GFF3177	0.77	-0.1
3,241,898	-		GFF3177	0.78	+0.2
3,241,905	+		GFF3177	0.79	-0.1
3,241,928	+		GFF3177	0.84	+1.2
3,241,967	-				-0.3
3,241,976	+				-0.0
3,241,986	-				+0.4
3,241,995	+				-1.2
3,241,995	+				-0.0
3,241,998	+				-1.3
3,242,003	-				+0.2
3,242,010	-				+0.5
3,242,016	+				-0.0
3,242,024	-				-1.5
3,242,024	-				+0.5
3,242,053	+		GFF3178	0.11	+0.8
3,242,070	+		GFF3178	0.17	+0.8
3,242,070	+		GFF3178	0.17	+1.2
3,242,070	+		GFF3178	0.17	-0.3
3,242,070	+		GFF3178	0.17	-1.3
3,242,070	+		GFF3178	0.17	-0.4
3,242,070	+		GFF3178	0.17	+0.8
3,242,078	-		GFF3178	0.19	-0.0
3,242,088	+		GFF3178	0.22	-1.9
3,242,088	+		GFF3178	0.22	+0.0