Strain Fitness in Sphingobium sp. HT1-2 around GFF3174

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,237,684	+		GFF3173	0.74	+1.0
3,237,684	+		GFF3173	0.74	-2.1
3,237,684	+		GFF3173	0.74	+0.0
3,237,692	-		GFF3173	0.74	-0.1
3,237,692	-		GFF3173	0.74	-0.9
3,237,692	-		GFF3173	0.74	-0.3
3,237,727	+		GFF3173	0.75	-1.3
3,237,728	+		GFF3173	0.75	-1.6
3,237,728	+		GFF3173	0.75	+0.6
3,237,728	+		GFF3173	0.75	-0.5
3,237,736	-		GFF3173	0.75	-1.1
3,237,736	-		GFF3173	0.75	-0.1
3,237,736	-		GFF3173	0.75	-0.9
3,237,737	+		GFF3173	0.75	-0.5
3,237,745	-		GFF3173	0.76	+0.7
3,237,768	-		GFF3173	0.76	+0.1
3,237,778	-		GFF3173	0.77	-0.9
3,237,778	-		GFF3173	0.77	-1.4
3,237,837	-		GFF3173	0.78	-0.5
3,237,892	+		GFF3173	0.80	-1.1
3,237,892	+		GFF3173	0.80	+0.1
3,237,902	+		GFF3173	0.80	-0.4
3,237,903	+		GFF3173	0.80	+0.3
3,237,903	+		GFF3173	0.80	-0.5
3,237,910	-		GFF3173	0.81	-0.9
3,237,910	-		GFF3173	0.81	+0.3
3,237,916	-		GFF3173	0.81	-1.4
3,237,943	+		GFF3173	0.82	+0.2
3,237,944	+		GFF3173	0.82	-1.5
3,237,947	+		GFF3173	0.82	-1.3
3,237,948	+		GFF3173	0.82	-1.7
3,237,951	-		GFF3173	0.82	-1.2
3,237,968	-		GFF3173	0.82	-0.8
3,237,968	-		GFF3173	0.82	-1.7
3,237,983	-		GFF3173	0.83	-0.9
3,237,990	+		GFF3173	0.83	-1.7
3,237,990	+		GFF3173	0.83	+0.5
3,237,990	+		GFF3173	0.83	+0.5
3,237,998	-		GFF3173	0.83	+1.9
3,237,998	-		GFF3173	0.83	-0.6
3,237,998	-		GFF3173	0.83	-1.5
3,237,998	-		GFF3173	0.83	-1.9
3,237,998	-		GFF3173	0.83	-0.5
3,237,998	-		GFF3173	0.83	-0.1
3,237,998	-		GFF3173	0.83	+0.8
3,238,017	+		GFF3173	0.84	+0.7
3,238,031	+		GFF3173	0.84	-0.4
3,238,031	+		GFF3173	0.84	-1.3
3,238,050	+		GFF3173	0.85	+0.2
3,238,054	+		GFF3173	0.85	+1.1
3,238,057	-		GFF3173	0.85	-1.7
3,238,059	+		GFF3173	0.85	+0.8
3,238,060	+		GFF3173	0.85	-0.7
3,238,061	+		GFF3173	0.85	-0.6
3,238,061	+		GFF3173	0.85	+1.7
3,238,061	+		GFF3173	0.85	-0.4
3,238,061	+		GFF3173	0.85	+1.3
3,238,061	+		GFF3173	0.85	-1.3
3,238,061	+		GFF3173	0.85	-1.8
3,238,061	+		GFF3173	0.85	-0.8
3,238,061	+		GFF3173	0.85	-0.1
3,238,061	+		GFF3173	0.85	+0.5
3,238,061	+		GFF3173	0.85	-1.8
3,238,062	-		GFF3173	0.85	+1.6
3,238,063	+		GFF3173	0.85	-1.1
3,238,063	+		GFF3173	0.85	+1.8
3,238,063	+		GFF3173	0.85	-0.3
3,238,063	+		GFF3173	0.85	-1.8
3,238,063	+		GFF3173	0.85	-1.1
3,238,063	+		GFF3173	0.85	-0.4
3,238,063	+		GFF3173	0.85	+0.2
3,238,063	+		GFF3173	0.85	+0.1
3,238,063	+		GFF3173	0.85	+0.4
3,238,063	+		GFF3173	0.85	-1.3
3,238,063	+		GFF3173	0.85	+0.4
3,238,063	+		GFF3173	0.85	-1.5
3,238,063	+		GFF3173	0.85	-0.7
3,238,063	+		GFF3173	0.85	-0.8
3,238,063	+		GFF3173	0.85	-0.4
3,238,063	+		GFF3173	0.85	+0.5
3,238,069	-		GFF3173	0.85	-0.5
3,238,069	-		GFF3173	0.85	+0.1
3,238,069	-		GFF3173	0.85	-0.5
3,238,071	+		GFF3173	0.85	+0.2
3,238,071	-		GFF3173	0.85	+0.8
3,238,071	-		GFF3173	0.85	+0.1
3,238,071	-		GFF3173	0.85	-0.6
3,238,071	-		GFF3173	0.85	+0.5
3,238,071	-		GFF3173	0.85	+0.3
3,238,071	-		GFF3173	0.85	+0.4
3,238,071	-		GFF3173	0.85	-0.0
3,238,071	-		GFF3173	0.85	+0.5
3,238,071	-		GFF3173	0.85	-0.1
3,238,071	-		GFF3173	0.85	-0.6
3,238,071	-		GFF3173	0.85	-0.8
3,238,071	-		GFF3173	0.85	-1.1
3,238,071	-		GFF3173	0.85	+1.1
3,238,071	-		GFF3173	0.85	+0.6
3,238,073	+		GFF3173	0.85	+0.1
3,238,079	-		GFF3173	0.86	-0.8
3,238,112	-		GFF3173	0.87	-0.3
3,238,127	+		GFF3173	0.87	-0.6
3,238,130	+		GFF3173	0.87	-0.1
3,238,138	-		GFF3173	0.87	-0.1
3,238,138	-		GFF3173	0.87	+0.1
3,238,138	-		GFF3173	0.87	-1.6
3,238,140	+		GFF3173	0.87	+0.2
3,238,147	+		GFF3173	0.88	+0.5
3,238,148	-		GFF3173	0.88	-0.1
3,238,148	-		GFF3173	0.88	+0.7
3,238,155	-		GFF3173	0.88	+0.6
3,238,155	-		GFF3173	0.88	-0.1
3,238,176	+		GFF3173	0.89	+0.2
3,238,176	+		GFF3173	0.89	+0.2
3,238,190	+		GFF3173	0.89	-0.6
3,238,203	+		GFF3173	0.89	-1.4
3,238,240	+				-2.4
3,238,254	+				+0.3
3,238,298	+				+0.7
3,238,298	+				-2.4
3,238,306	-				-1.6
3,238,329	+				-1.5
3,238,386	-				-0.8
3,238,397	-				-1.4
3,238,406	+				+0.1
3,238,406	+				-0.0
3,238,406	+				-1.4
3,238,414	-				-2.5
3,238,414	-				-0.5
3,238,414	-				-0.3
3,238,421	+				+0.3
3,238,429	-				-1.1
3,238,429	-				+1.1
3,238,443	+				-0.6
3,238,443	+				-1.5
3,238,444	+				+0.3
3,238,451	+				-0.5
3,238,451	-				+0.6
3,238,452	-				+1.2
3,238,485	+				+0.1
3,238,490	+				-0.7
3,238,493	-				-1.1
3,238,519	-				-1.4
3,238,557	+				-0.6
3,238,579	+				-0.1
3,238,584	+				+0.2
3,238,587	-				+0.4
3,238,587	-				-1.0
3,238,587	-				+0.4
3,238,587	-				-0.4
3,238,587	-				+0.9
3,238,592	-				-1.2
3,238,623	+				-0.0
3,238,664	-				+0.2
3,238,668	+				-0.1
3,238,668	+				-0.9
3,238,676	-				-2.1
3,238,693	+				+0.1
3,238,698	+				-1.1
3,238,698	+				+0.2
3,238,698	+				-0.8
3,238,698	+				-0.2
3,238,698	+				-1.1
3,238,700	-				-0.4
3,238,701	-				-1.1
3,238,706	-				-0.1
3,238,706	-				-0.9
3,238,740	+				+0.4
3,238,741	+				-0.5
3,238,741	+				+0.4
3,238,741	+				-0.8
3,238,746	+				-0.4
3,238,746	+				-1.0
3,238,746	+				-0.4
3,238,746	+				-0.5
3,238,746	+				+0.4
3,238,746	+				-0.0
3,238,746	+				-0.2
3,238,746	+				+0.4
3,238,746	+				+0.3
3,238,746	+				+1.0
3,238,746	+				-1.1
3,238,746	+				-2.1
3,238,746	+				-0.5
3,238,751	+				-2.2
3,238,751	+				-0.3
3,238,754	-				-0.0
3,238,754	-				+0.1
3,238,754	-				-0.9
3,238,754	-				+0.2
3,238,754	-				-1.1
3,238,754	-				+0.5
3,238,754	-				-1.8
3,238,754	-				+0.3
3,238,754	-				-1.9
3,238,754	-				+0.3
3,238,754	-				-1.1
3,238,759	-				-1.9
3,238,810	+		GFF3174	0.11	-0.3
3,238,818	-		GFF3174	0.12	+0.7
3,238,823	+		GFF3174	0.13	-1.5
3,238,831	-		GFF3174	0.13	-1.6
3,238,857	+		GFF3174	0.16	+1.1
3,238,886	+		GFF3174	0.18	-0.9
3,238,891	+		GFF3174	0.19	+0.6
3,238,899	-		GFF3174	0.19	+0.1
3,238,899	-		GFF3174	0.19	+0.1
3,238,940	-		GFF3174	0.23	+1.1
3,238,946	-		GFF3174	0.23	-0.6
3,238,947	+		GFF3174	0.24	+0.2
3,238,947	+		GFF3174	0.24	+1.0
3,238,952	+		GFF3174	0.24	+1.0
3,238,955	-		GFF3174	0.24	-0.6
3,238,982	+		GFF3174	0.27	+0.1
3,239,023	-		GFF3174	0.30	+0.3
3,239,074	+		GFF3174	0.35	+0.2
3,239,098	-		GFF3174	0.37	+1.0
3,239,098	-		GFF3174	0.37	+0.3
3,239,098	-		GFF3174	0.37	-0.1
3,239,098	-		GFF3174	0.37	-0.3
3,239,098	-		GFF3174	0.37	+0.1
3,239,125	-		GFF3174	0.39	-1.1
3,239,133	-		GFF3174	0.40	+0.1
3,239,149	+		GFF3174	0.41	+0.8
3,239,149	+		GFF3174	0.41	+0.5
3,239,166	+		GFF3174	0.43	-2.3
3,239,208	+		GFF3174	0.47	-0.7
3,239,216	-		GFF3174	0.47	-1.3
3,239,223	+		GFF3174	0.48	-1.8
3,239,231	-		GFF3174	0.49	-1.5
3,239,250	-		GFF3174	0.50	-0.0
3,239,251	+		GFF3174	0.50	-1.1
3,239,254	-		GFF3174	0.51	+1.5
3,239,259	-		GFF3174	0.51	+0.9
3,239,263	+		GFF3174	0.51	+0.8
3,239,263	+		GFF3174	0.51	-2.5
3,239,263	+		GFF3174	0.51	-0.0
3,239,271	-		GFF3174	0.52	+0.1
3,239,313	+		GFF3174	0.56	+1.4
3,239,345	+		GFF3174	0.59	+0.3
3,239,350	+		GFF3174	0.59	-1.0
3,239,350	+		GFF3174	0.59	-0.4
3,239,352	+		GFF3174	0.59	-1.6
3,239,355	+		GFF3174	0.60	-1.5
3,239,358	-		GFF3174	0.60	+0.3
3,239,363	-		GFF3174	0.60	+0.1
3,239,363	-		GFF3174	0.60	-1.9
3,239,363	-		GFF3174	0.60	-0.6
3,239,368	-		GFF3174	0.61	-0.0
3,239,373	-		GFF3174	0.61	-1.2
3,239,373	-		GFF3174	0.61	+1.1
3,239,396	+		GFF3174	0.63	+0.1
3,239,404	-		GFF3174	0.64	-0.8
3,239,420	-		GFF3174	0.65	+0.9
3,239,426	+		GFF3174	0.66	-1.5
3,239,459	+		GFF3174	0.69	+0.0
3,239,503	-		GFF3174	0.73	-0.6
3,239,503	-		GFF3174	0.73	+0.7
3,239,503	-		GFF3174	0.73	+0.3
3,239,504	-		GFF3174	0.73	-0.3
3,239,505	+		GFF3174	0.73	-0.6
3,239,505	+		GFF3174	0.73	+0.3
3,239,505	+		GFF3174	0.73	+0.6
3,239,507	+		GFF3174	0.73	-0.9
3,239,508	-		GFF3174	0.73	-0.5
3,239,513	-		GFF3174	0.73	+0.6
3,239,530	-		GFF3174	0.75	-1.0
3,239,530	-		GFF3174	0.75	+0.3
3,239,537	+		GFF3174	0.76	-0.6
3,239,594	+		GFF3174	0.81	+0.2
3,239,599	+		GFF3174	0.81	+0.7
3,239,602	-		GFF3174	0.81	-0.5
3,239,602	-		GFF3174	0.81	-1.1
3,239,602	-		GFF3174	0.81	-0.3
3,239,602	-		GFF3174	0.81	-0.6
3,239,607	-		GFF3174	0.82	-0.7
3,239,619	-		GFF3174	0.83	-1.3
3,239,644	+		GFF3174	0.85	+1.4
3,239,652	-		GFF3174	0.86	-0.9
3,239,652	-		GFF3174	0.86	-0.8
3,239,665	+		GFF3174	0.87	-0.2
3,239,673	-		GFF3174	0.88	-1.1
3,239,692	-		GFF3174	0.89	+0.4
3,239,718	+				-0.6
3,239,737	-				+0.9
3,239,756	+				+0.1
3,239,763	+				+0.5
3,239,764	-				-0.8
3,239,764	-				+0.2
3,239,765	-				-1.9
3,239,808	-				-0.0
3,239,823	+				+0.8
3,239,828	+				+1.3
3,239,831	-				+0.7
3,239,833	+				-1.5
3,239,845	+				-1.3
3,239,846	+				+0.6
3,239,846	+				+0.4
3,239,853	-				-0.5
3,239,853	-				-1.4
3,239,853	-				+0.3
3,239,854	-				-2.2
3,239,854	-				-0.6
3,239,854	-				-1.8
3,239,854	-				-1.7
3,239,854	-				+0.3
3,239,854	-				-0.7
3,239,868	+				-1.0
3,239,877	-				-0.1
3,239,879	+				+0.1
3,239,881	-				-1.0
3,239,918	-				-0.2
3,239,918	-				-1.2
3,239,918	-				-0.2
3,239,943	+				+0.0
3,239,943	+				-0.7
3,239,943	+				-1.1
3,239,943	+				-0.7
3,239,943	+				+0.7
3,239,951	-				-0.5
3,239,951	-				-0.3
3,239,960	+				-1.3
3,239,977	+				-1.0
3,239,991	+				+0.3
3,240,044	+		GFF3175	0.13	-1.4
3,240,044	+		GFF3175	0.13	+0.4
3,240,044	+		GFF3175	0.13	+0.7
3,240,044	+		GFF3175	0.13	-0.8
3,240,044	+		GFF3175	0.13	-0.3
3,240,044	+		GFF3175	0.13	+0.6
3,240,044	+		GFF3175	0.13	-0.6
3,240,050	+		GFF3175	0.14	-1.3
3,240,052	-		GFF3175	0.14	-0.6
3,240,052	-		GFF3175	0.14	-0.4
3,240,052	-		GFF3175	0.14	+1.2
3,240,052	-		GFF3175	0.14	+0.1
3,240,052	-		GFF3175	0.14	+0.7
3,240,052	-		GFF3175	0.14	+1.4
3,240,052	-		GFF3175	0.14	-0.3
3,240,062	-		GFF3175	0.15	-1.7
3,240,090	-		GFF3175	0.17	+0.0
3,240,092	-		GFF3175	0.17	+1.3
3,240,092	-		GFF3175	0.17	-0.9
3,240,132	+		GFF3175	0.21	-1.1
3,240,158	+		GFF3175	0.23	+0.7
3,240,165	+		GFF3175	0.23	+0.6
3,240,173	-		GFF3175	0.24	-1.3
3,240,197	+		GFF3175	0.26	-1.3
3,240,197	+		GFF3175	0.26	+0.3
3,240,197	+		GFF3175	0.26	+0.6
3,240,205	-		GFF3175	0.27	+0.2
3,240,205	-		GFF3175	0.27	-0.7
3,240,211	-		GFF3175	0.27	+0.7
3,240,215	-		GFF3175	0.27	+0.1
3,240,219	+		GFF3175	0.28	+1.6
3,240,219	+		GFF3175	0.28	+1.4
3,240,219	+		GFF3175	0.28	+0.6
3,240,219	+		GFF3175	0.28	+0.4
3,240,219	+		GFF3175	0.28	-1.0
3,240,219	+		GFF3175	0.28	+0.8
3,240,219	+		GFF3175	0.28	-0.4
3,240,222	-		GFF3175	0.28	-0.3
3,240,222	-		GFF3175	0.28	+1.2
3,240,222	-		GFF3175	0.28	-0.1
3,240,222	-		GFF3175	0.28	-0.7
3,240,227	-		GFF3175	0.28	+0.3
3,240,227	-		GFF3175	0.28	-1.6
3,240,233	+		GFF3175	0.29	-0.3
3,240,233	-		GFF3175	0.29	-0.6
3,240,241	-		GFF3175	0.30	-0.5
3,240,241	-		GFF3175	0.30	-0.3
3,240,286	+		GFF3175	0.33	+0.0
3,240,294	-		GFF3175	0.34	-1.1
3,240,294	-		GFF3175	0.34	-2.2
3,240,301	+		GFF3175	0.35	+0.4
3,240,330	-		GFF3175	0.37	-0.5
3,240,335	+		GFF3175	0.37	-1.2
3,240,353	-		GFF3175	0.39	+0.7
3,240,356	+		GFF3175	0.39	-1.4
3,240,370	-		GFF3175	0.40	-1.4
3,240,378	-		GFF3175	0.41	+0.2
3,240,389	+		GFF3175	0.42	+0.6
3,240,426	-		GFF3175	0.45	+0.6
3,240,434	+		GFF3175	0.46	+1.2
3,240,442	-		GFF3175	0.46	+0.4
3,240,442	-		GFF3175	0.46	-0.1
3,240,442	-		GFF3175	0.46	+0.4
3,240,442	-		GFF3175	0.46	+0.6
3,240,442	-		GFF3175	0.46	-0.2
3,240,465	-		GFF3175	0.48	+0.4
3,240,491	+		GFF3175	0.50	-0.3
3,240,501	+		GFF3175	0.51	-0.3
3,240,539	+		GFF3175	0.54	-1.5
3,240,539	+		GFF3175	0.54	-0.2
3,240,547	+		GFF3175	0.55	-0.4
3,240,547	-		GFF3175	0.55	+0.8
3,240,547	-		GFF3175	0.55	-1.1
3,240,548	-		GFF3175	0.55	-1.3
3,240,548	-		GFF3175	0.55	-0.1
3,240,555	-		GFF3175	0.56	-1.5
3,240,555	-		GFF3175	0.56	+0.1
3,240,557	+		GFF3175	0.56	-1.1
3,240,576	-		GFF3175	0.57	-0.7
3,240,600	+		GFF3175	0.59	-1.6
3,240,624	+		GFF3175	0.61	-0.1
3,240,627	-		GFF3175	0.62	+1.6
3,240,632	-		GFF3175	0.62	-0.3
3,240,635	+		GFF3175	0.62	-0.3
3,240,654	-		GFF3175	0.64	-0.3
3,240,664	+		GFF3175	0.65	-2.0
3,240,664	+		GFF3175	0.65	+0.8
3,240,667	-		GFF3175	0.65	+0.3
3,240,685	-		GFF3175	0.66	-1.4
3,240,694	+		GFF3175	0.67	+0.2
3,240,696	+		GFF3175	0.67	-0.7
3,240,707	-		GFF3175	0.68	-0.0
3,240,717	-		GFF3175	0.69	-0.7
3,240,732	+		GFF3175	0.70	+0.2
3,240,737	+		GFF3175	0.71	-2.9
3,240,737	+		GFF3175	0.71	+0.9
3,240,747	+		GFF3175	0.72	+0.8
3,240,794	+		GFF3175	0.75	-0.6
3,240,794	+		GFF3175	0.75	-1.5
3,240,802	-		GFF3175	0.76	-1.1
3,240,813	+		GFF3175	0.77	+0.3
3,240,813	+		GFF3175	0.77	-0.6