Strain Fitness in Sphingobium sp. HT1-2 around GFF3122

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,193,014	+		GFF3120	0.55	+0.3
3,193,020	+		GFF3120	0.55	+0.2
3,193,152	+		GFF3120	0.68	-1.3
3,193,206	+		GFF3120	0.73	-0.8
3,193,230	-		GFF3120	0.75	-0.8
3,193,320	-		GFF3120	0.83	+1.3
3,193,337	+		GFF3120	0.85	-1.5
3,193,345	-		GFF3120	0.86	-0.6
3,193,352	+		GFF3120	0.86	-0.3
3,193,480	-				-0.5
3,193,491	+				-0.5
3,193,499	+				-1.4
3,193,499	-				-1.1
3,193,499	-				+0.2
3,193,504	-				+0.7
3,193,518	-				-0.8
3,193,520	+				+1.0
3,193,520	+				-1.9
3,193,520	+				-0.8
3,193,520	+				-0.2
3,193,537	+				-1.8
3,193,557	-				-0.5
3,193,570	+				-0.2
3,193,600	-				-0.1
3,193,611	-				-1.8
3,193,611	-				-0.9
3,193,631	-				-1.3
3,193,631	-				+0.3
3,193,637	-				-0.9
3,193,659	-				-0.9
3,193,661	-				-1.6
3,193,664	+				+0.2
3,193,664	+				-0.6
3,193,705	-		GFF3121	0.16	+0.6
3,193,708	+		GFF3121	0.18	-0.7
3,193,745	-		GFF3121	0.38	-0.6
3,193,758	-		GFF3121	0.45	-1.9
3,193,758	-		GFF3121	0.45	-0.5
3,193,776	+		GFF3121	0.54	-0.3
3,193,792	+		GFF3121	0.63	+1.5
3,193,799	-		GFF3121	0.67	-0.0
3,193,801	+		GFF3121	0.68	-1.7
3,193,801	+		GFF3121	0.68	-0.4
3,193,806	+		GFF3121	0.70	+0.3
3,193,806	+		GFF3121	0.70	+0.6
3,193,806	+		GFF3121	0.70	-1.6
3,193,814	-		GFF3121	0.75	-1.3
3,193,814	-		GFF3121	0.75	-0.4
3,193,814	-		GFF3121	0.75	+1.5
3,193,814	-		GFF3121	0.75	+0.0
3,193,814	-		GFF3121	0.75	-1.6
3,193,814	-		GFF3121	0.75	-0.6
3,193,814	-		GFF3121	0.75	-0.9
3,193,819	-		GFF3121	0.77	+1.2
3,193,823	+		GFF3121	0.80	+0.4
3,193,847	+				-0.2
3,193,856	+				-1.4
3,193,856	+				+0.4
3,193,856	+				-0.7
3,193,856	+				-1.1
3,193,864	-				-2.7
3,193,893	-				-0.8
3,193,901	+				+0.8
3,193,901	+				-0.7
3,193,901	+				-2.0
3,193,901	+				-0.3
3,193,901	+				+0.2
3,193,909	-				-0.1
3,193,909	-				-1.8
3,193,909	-				+0.2
3,193,927	+				-1.8
3,193,945	-				+0.2
3,193,946	+				+0.2
3,193,955	-				+0.2
3,193,985	-				-2.7
3,194,000	+				-0.6
3,194,015	-				-0.8
3,194,026	+				-1.3
3,194,034	-				-0.9
3,194,044	-				-1.4
3,194,049	-				+1.0
3,194,083	+		GFF3122	0.10	-1.3
3,194,086	-		GFF3122	0.10	+0.0
3,194,099	-		GFF3122	0.11	+0.8
3,194,129	-		GFF3122	0.14	+0.1
3,194,131	+		GFF3122	0.14	-0.4
3,194,139	-		GFF3122	0.14	+0.3
3,194,173	+		GFF3122	0.17	-1.8
3,194,216	-		GFF3122	0.20	-1.4
3,194,230	+		GFF3122	0.21	-0.2
3,194,231	+		GFF3122	0.21	-0.9
3,194,238	+		GFF3122	0.22	-1.6
3,194,245	+		GFF3122	0.22	+0.7
3,194,274	+		GFF3122	0.24	-0.2
3,194,279	+		GFF3122	0.25	-1.4
3,194,292	-		GFF3122	0.26	-1.1
3,194,309	+		GFF3122	0.27	-2.6
3,194,326	+		GFF3122	0.28	-1.3
3,194,326	+		GFF3122	0.28	+0.1
3,194,326	+		GFF3122	0.28	+0.6
3,194,332	+		GFF3122	0.29	-0.1
3,194,334	-		GFF3122	0.29	-1.2
3,194,354	+		GFF3122	0.30	-1.3
3,194,354	+		GFF3122	0.30	+1.2
3,194,362	-		GFF3122	0.31	-2.1
3,194,362	-		GFF3122	0.31	-2.1
3,194,362	-		GFF3122	0.31	-0.1
3,194,362	-		GFF3122	0.31	-1.3
3,194,362	-		GFF3122	0.31	-0.5
3,194,362	-		GFF3122	0.31	-0.3
3,194,371	-		GFF3122	0.32	-1.5
3,194,396	-		GFF3122	0.34	-2.2
3,194,409	+		GFF3122	0.35	-0.8
3,194,410	+		GFF3122	0.35	-2.2
3,194,412	-		GFF3122	0.35	-0.7
3,194,449	-		GFF3122	0.38	-0.6
3,194,456	+		GFF3122	0.38	-0.2
3,194,460	-		GFF3122	0.38	-0.4
3,194,466	+		GFF3122	0.39	+0.1
3,194,496	+		GFF3122	0.41	-2.7
3,194,496	+		GFF3122	0.41	-0.0
3,194,496	+		GFF3122	0.41	-2.0
3,194,496	+		GFF3122	0.41	+1.0
3,194,504	-		GFF3122	0.42	-2.2
3,194,504	-		GFF3122	0.42	+0.5
3,194,504	-		GFF3122	0.42	+0.5
3,194,504	-		GFF3122	0.42	-2.9
3,194,504	-		GFF3122	0.42	-1.1
3,194,504	-		GFF3122	0.42	-0.7
3,194,504	-		GFF3122	0.42	+0.6
3,194,504	-		GFF3122	0.42	-0.5
3,194,504	-		GFF3122	0.42	-0.3
3,194,504	-		GFF3122	0.42	+0.2
3,194,521	-		GFF3122	0.43	-0.8
3,194,565	+		GFF3122	0.46	+0.2
3,194,565	+		GFF3122	0.46	+0.5
3,194,565	+		GFF3122	0.46	+0.5
3,194,569	+		GFF3122	0.47	-0.6
3,194,573	-		GFF3122	0.47	-0.4
3,194,573	-		GFF3122	0.47	-1.0
3,194,573	-		GFF3122	0.47	-0.6
3,194,573	-		GFF3122	0.47	-0.4
3,194,573	-		GFF3122	0.47	+0.2
3,194,574	+		GFF3122	0.47	-0.2
3,194,580	+		GFF3122	0.47	-0.0
3,194,584	+		GFF3122	0.48	+1.0
3,194,584	+		GFF3122	0.48	-0.1
3,194,587	-		GFF3122	0.48	-0.1
3,194,592	-		GFF3122	0.48	-0.9
3,194,592	-		GFF3122	0.48	+1.0
3,194,617	-		GFF3122	0.50	-1.7
3,194,635	-		GFF3122	0.52	+0.1
3,194,729	-		GFF3122	0.59	+1.3
3,194,729	-		GFF3122	0.59	-0.3
3,194,764	+		GFF3122	0.61	+0.6
3,194,802	+		GFF3122	0.64	-1.9
3,194,802	+		GFF3122	0.64	+1.5
3,194,802	+		GFF3122	0.64	-1.4
3,194,802	+		GFF3122	0.64	-0.0
3,194,807	+		GFF3122	0.65	+0.0
3,194,810	-		GFF3122	0.65	+0.1
3,194,880	+		GFF3122	0.70	-2.1
3,194,880	+		GFF3122	0.70	+0.7
3,194,881	-		GFF3122	0.70	-0.7
3,194,897	+		GFF3122	0.71	-0.7
3,194,905	-		GFF3122	0.72	+0.0
3,194,905	-		GFF3122	0.72	-0.4
3,194,905	-		GFF3122	0.72	-1.3
3,194,905	-		GFF3122	0.72	-0.3
3,194,918	+		GFF3122	0.73	-0.8
3,194,918	+		GFF3122	0.73	+0.4
3,194,918	+		GFF3122	0.73	-1.9
3,194,921	-		GFF3122	0.73	+1.4
3,194,926	-		GFF3122	0.74	-0.5
3,194,926	-		GFF3122	0.74	+1.2
3,194,926	-		GFF3122	0.74	-0.7
3,194,926	-		GFF3122	0.74	-0.7
3,194,926	-		GFF3122	0.74	+0.8
3,194,926	-		GFF3122	0.74	-0.6
3,194,926	-		GFF3122	0.74	-0.6
3,194,963	+		GFF3122	0.76	+0.6
3,194,963	+		GFF3122	0.76	-1.5
3,194,965	+		GFF3122	0.76	+0.2
3,194,971	+		GFF3122	0.77	+0.6
3,194,971	-		GFF3122	0.77	-0.1
3,194,981	+		GFF3122	0.78	-0.9
3,194,989	-		GFF3122	0.78	-1.4
3,194,991	+		GFF3122	0.78	-0.0
3,194,999	-		GFF3122	0.79	-1.3
3,195,029	-		GFF3122	0.81	+0.1
3,195,029	-		GFF3122	0.81	+0.1
3,195,031	+		GFF3122	0.81	-0.5
3,195,045	+		GFF3122	0.82	-1.0
3,195,045	+		GFF3122	0.82	-2.7
3,195,045	+		GFF3122	0.82	-0.6
3,195,045	+		GFF3122	0.82	-0.9
3,195,053	-		GFF3122	0.83	-0.8
3,195,053	-		GFF3122	0.83	-0.2
3,195,053	-		GFF3122	0.83	+0.1
3,195,115	-		GFF3122	0.88	-1.4
3,195,138	-		GFF3122	0.89	-0.0
3,195,138	-		GFF3122	0.89	-0.1
3,195,148	-				+1.4
3,195,164	+				-1.2
3,195,183	-				+1.5
3,195,187	+				-0.2
3,195,192	+				-0.3
3,195,192	+				+0.9
3,195,192	+				-0.4
3,195,192	+				+1.0
3,195,192	+				-1.1
3,195,192	+				-1.1
3,195,192	+				+0.4
3,195,192	+				-0.1
3,195,197	+				-0.2
3,195,200	-				-0.9
3,195,200	-				+0.5
3,195,200	-				-0.1
3,195,200	-				+0.1
3,195,200	-				-1.7
3,195,200	-				-0.3
3,195,200	-				+0.7
3,195,200	-				-0.7
3,195,200	-				-1.4
3,195,205	-				-1.5
3,195,205	-				-0.9
3,195,205	-				-0.7
3,195,205	-				+0.7
3,195,209	+				+1.4
3,195,209	+				-1.5
3,195,209	+				+0.1
3,195,209	+				+0.1
3,195,209	+				+0.1
3,195,209	+				+1.1
3,195,209	+				-1.0
3,195,209	+				-1.2
3,195,209	+				-0.4
3,195,209	+				-0.3
3,195,210	-				+0.2
3,195,217	-				+0.1
3,195,217	-				+0.4
3,195,217	-				-0.7
3,195,217	-				-0.9
3,195,217	-				+0.4
3,195,217	-				+0.1
3,195,217	-				-0.7
3,195,217	-				-0.2
3,195,217	-				-0.6
3,195,217	-				+0.5
3,195,217	-				+1.0
3,195,217	-				-1.0
3,195,217	-				+0.4
3,195,246	-				-1.3
3,195,251	-				+0.9
3,195,251	-				+0.6
3,195,404	-				-0.3
3,195,404	-				+1.7
3,195,411	+				-0.4
3,195,414	-				+0.3
3,195,414	-				+1.0
3,195,431	-				-0.9
3,195,462	+		GFF3123	0.13	-0.6
3,195,462	+		GFF3123	0.13	-2.2
3,195,465	-		GFF3123	0.13	-0.1
3,195,470	-		GFF3123	0.14	-0.8
3,195,470	-		GFF3123	0.14	+0.5
3,195,470	-		GFF3123	0.14	+0.9
3,195,470	-		GFF3123	0.14	-0.8
3,195,497	-		GFF3123	0.18	-1.5
3,195,514	+		GFF3123	0.20	-1.3
3,195,529	+		GFF3123	0.22	-0.8
3,195,534	+		GFF3123	0.22	-0.9
3,195,534	+		GFF3123	0.22	-1.8
3,195,537	-		GFF3123	0.23	+0.8
3,195,542	-		GFF3123	0.23	+0.3
3,195,542	-		GFF3123	0.23	-1.2
3,195,542	-		GFF3123	0.23	-1.2
3,195,542	-		GFF3123	0.23	-2.0
3,195,542	-		GFF3123	0.23	-0.5
3,195,557	-		GFF3123	0.25	+0.3
3,195,591	-		GFF3123	0.30	+0.2
3,195,653	-		GFF3123	0.37	+0.4
3,195,661	+		GFF3123	0.38	+0.1
3,195,667	-		GFF3123	0.39	+0.0
3,195,679	-		GFF3123	0.41	-1.2
3,195,680	+		GFF3123	0.41	+0.1
3,195,681	-		GFF3123	0.41	+0.7
3,195,681	-		GFF3123	0.41	+0.5
3,195,694	+		GFF3123	0.43	+0.5
3,195,694	+		GFF3123	0.43	-0.8
3,195,694	-		GFF3123	0.43	+0.8
3,195,702	-		GFF3123	0.44	-1.3
3,195,702	-		GFF3123	0.44	-1.9
3,195,714	+		GFF3123	0.45	-1.1
3,195,714	+		GFF3123	0.45	-0.4
3,195,714	+		GFF3123	0.45	-0.4
3,195,714	+		GFF3123	0.45	-1.3
3,195,714	+		GFF3123	0.45	+0.5
3,195,722	-		GFF3123	0.46	+0.1
3,195,748	+		GFF3123	0.49	-1.6
3,195,769	-		GFF3123	0.52	-0.3
3,195,805	+		GFF3123	0.57	-1.4
3,195,805	+		GFF3123	0.57	-0.9
3,195,805	+		GFF3123	0.57	+1.5
3,195,805	+		GFF3123	0.57	-0.6
3,195,811	+		GFF3123	0.58	+0.3
3,195,811	+		GFF3123	0.58	-0.2
3,195,842	+		GFF3123	0.61	+0.6
3,195,862	+		GFF3123	0.64	+0.2
3,195,890	+		GFF3123	0.68	+0.2
3,195,890	+		GFF3123	0.68	+0.1
3,195,890	+		GFF3123	0.68	-0.6
3,195,915	+		GFF3123	0.71	+0.7
3,195,928	+		GFF3123	0.72	-1.4
3,195,936	-		GFF3123	0.73	+0.2
3,195,962	-		GFF3123	0.77	+1.0
3,195,991	+		GFF3123	0.80	-0.5
3,195,992	+		GFF3123	0.81	+0.1
3,196,000	-		GFF3123	0.82	+0.4
3,196,000	-		GFF3123	0.82	+1.0
3,196,033	+		GFF3123	0.86	-0.1
3,196,033	+		GFF3123	0.86	-0.1
3,196,033	+		GFF3123	0.86	-0.7
3,196,033	+		GFF3123	0.86	-2.1
3,196,041	-		GFF3123	0.87	-0.9
3,196,041	-		GFF3123	0.87	-0.7
3,196,041	-		GFF3123	0.87	-1.9
3,196,041	-		GFF3123	0.87	-0.4
3,196,041	-		GFF3123	0.87	-0.4
3,196,042	-		GFF3123	0.87	+0.4
3,196,052	-		GFF3123	0.88	+0.1
3,196,052	-		GFF3123	0.88	-1.1
3,196,071	+				-1.3
3,196,098	+				-1.1
3,196,098	+				-2.0
3,196,098	+				-0.4
3,196,098	+				+1.1
3,196,098	+				-0.4
3,196,106	-				+0.4
3,196,106	-				+0.6
3,196,106	-				+0.1
3,196,106	-				-1.3
3,196,116	+				+0.6
3,196,116	+				+0.7
3,196,124	-				-0.6
3,196,124	-				-0.6
3,196,161	-				-1.2
3,196,162	+				-1.6
3,196,207	+				-2.6
3,196,213	+				-0.9
3,196,213	+				-1.3
3,196,221	-				+0.1
3,196,221	-				+0.5
3,196,221	-				-1.0
3,196,221	-				-0.2
3,196,237	-				+0.4
3,196,237	-				+0.2
3,196,237	-				+1.0
3,196,247	-				-0.1
3,196,247	-				+0.7
3,196,262	+				+0.1
3,196,267	+				+0.2
3,196,270	-				-0.1
3,196,275	-				+0.8