Strain Fitness in Sphingobium sp. HT1-2 around GFF3114

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,184,235	-		GFF3112	0.58	+0.4
3,184,235	-		GFF3112	0.58	-0.7
3,184,235	-		GFF3112	0.58	-0.9
3,184,238	-		GFF3112	0.59	-0.7
3,184,241	+		GFF3112	0.59	+0.6
3,184,247	+		GFF3112	0.60	-0.4
3,184,249	-		GFF3112	0.60	-1.9
3,184,249	-		GFF3112	0.60	-0.9
3,184,288	+		GFF3112	0.64	-0.1
3,184,298	-		GFF3112	0.65	-0.1
3,184,304	-		GFF3112	0.66	-0.8
3,184,306	-		GFF3112	0.66	-0.1
3,184,339	+		GFF3112	0.70	+0.3
3,184,357	-		GFF3112	0.72	+1.3
3,184,369	+		GFF3112	0.74	-1.3
3,184,371	+		GFF3112	0.74	-1.0
3,184,371	+		GFF3112	0.74	-0.3
3,184,371	+		GFF3112	0.74	+0.9
3,184,371	+		GFF3112	0.74	-0.2
3,184,379	+		GFF3112	0.75	-1.3
3,184,379	-		GFF3112	0.75	+0.8
3,184,389	+		GFF3112	0.76	-0.1
3,184,415	-		GFF3112	0.79	-0.3
3,184,420	-		GFF3112	0.79	-0.3
3,184,428	+		GFF3112	0.80	-1.9
3,184,432	-		GFF3112	0.81	+0.3
3,184,448	+		GFF3112	0.83	-0.6
3,184,456	-		GFF3112	0.84	-0.3
3,184,456	-		GFF3112	0.84	-1.6
3,184,473	+		GFF3112	0.85	-0.7
3,184,479	+		GFF3112	0.86	+0.2
3,184,479	+		GFF3112	0.86	-2.0
3,184,481	+		GFF3112	0.86	+0.1
3,184,481	-		GFF3112	0.86	-1.3
3,184,482	-		GFF3112	0.86	-0.8
3,184,483	+		GFF3112	0.87	+0.5
3,184,487	-		GFF3112	0.87	-0.0
3,184,493	+		GFF3112	0.88	-1.5
3,184,508	+		GFF3112	0.89	-0.6
3,184,538	-				-0.5
3,184,538	-				-0.6
3,184,585	+				-0.6
3,184,585	+				+0.2
3,184,585	+				-0.9
3,184,585	+				-1.4
3,184,585	+				-0.3
3,184,585	+				-0.2
3,184,591	-				-0.9
3,184,591	-				-0.8
3,184,593	+				+0.3
3,184,593	-				+0.7
3,184,593	-				-1.2
3,184,593	-				-0.3
3,184,610	+				-0.0
3,184,619	+				-1.8
3,184,683	+				-1.1
3,184,700	+				+0.8
3,184,727	+				+0.7
3,184,727	-				-0.0
3,184,753	+		GFF3113	0.11	-0.4
3,184,753	+		GFF3113	0.11	-0.8
3,184,776	-		GFF3113	0.16	-1.3
3,184,782	+		GFF3113	0.17	-0.7
3,184,785	-		GFF3113	0.17	-0.8
3,184,792	+		GFF3113	0.19	+0.6
3,184,792	+		GFF3113	0.19	-1.6
3,184,792	+		GFF3113	0.19	+0.4
3,184,792	+		GFF3113	0.19	+0.5
3,184,792	+		GFF3113	0.19	-0.6
3,184,792	+		GFF3113	0.19	-2.1
3,184,792	+		GFF3113	0.19	-1.0
3,184,800	-		GFF3113	0.21	+0.0
3,184,800	-		GFF3113	0.21	-0.5
3,184,800	-		GFF3113	0.21	+1.1
3,184,800	-		GFF3113	0.21	+0.9
3,184,800	-		GFF3113	0.21	-0.5
3,184,800	-		GFF3113	0.21	-2.9
3,184,811	+		GFF3113	0.23	-2.2
3,184,898	+		GFF3113	0.41	+0.3
3,184,907	-		GFF3113	0.43	+0.1
3,184,909	+		GFF3113	0.43	-0.6
3,184,919	+		GFF3113	0.45	+1.0
3,184,928	-		GFF3113	0.47	+0.1
3,184,928	-		GFF3113	0.47	-0.1
3,184,933	-		GFF3113	0.48	-1.0
3,184,964	-		GFF3113	0.54	+0.6
3,185,017	+		GFF3113	0.65	-1.3
3,185,026	+		GFF3113	0.67	-0.1
3,185,078	-		GFF3113	0.78	-1.1
3,185,078	-		GFF3113	0.78	-0.8
3,185,083	+		GFF3113	0.79	-1.6
3,185,101	+		GFF3113	0.83	-2.2
3,185,106	+		GFF3113	0.84	-0.5
3,185,109	-		GFF3113	0.84	+0.0
3,185,109	-		GFF3113	0.84	-2.1
3,185,109	-		GFF3113	0.84	-0.2
3,185,114	-		GFF3113	0.85	-0.1
3,185,114	-		GFF3113	0.85	+0.1
3,185,120	+		GFF3113	0.86	+0.9
3,185,120	+		GFF3113	0.86	-0.3
3,185,120	+		GFF3113	0.86	-0.0
3,185,120	+		GFF3113	0.86	-1.5
3,185,128	-		GFF3113	0.88	-0.6
3,185,128	-		GFF3113	0.88	+0.1
3,185,128	-		GFF3113	0.88	-0.8
3,185,128	-		GFF3113	0.88	+0.6
3,185,145	-				-0.4
3,185,145	-				-1.3
3,185,147	+				-0.5
3,185,149	+				+1.2
3,185,155	-				-0.9
3,185,176	-				+2.0
3,185,191	+				-0.6
3,185,203	+				+0.3
3,185,203	+				-2.0
3,185,203	+				-0.1
3,185,203	+				-0.3
3,185,203	+				-0.9
3,185,203	+				-0.8
3,185,211	-				-2.1
3,185,211	-				+0.0
3,185,211	-				+0.2
3,185,211	-				+0.3
3,185,211	-				+0.6
3,185,211	-				-2.3
3,185,229	+				-0.7
3,185,229	+				-0.1
3,185,237	-				+0.7
3,185,259	+				-1.5
3,185,262	-				+1.3
3,185,269	+				+0.0
3,185,304	-				-0.2
3,185,344	+				-0.4
3,185,347	-				-0.2
3,185,375	-				-0.5
3,185,377	+				+0.1
3,185,377	+				-1.6
3,185,382	+				-1.1
3,185,382	+				+0.3
3,185,382	+				-0.3
3,185,390	-				+0.5
3,185,390	-				-1.9
3,185,403	-				+0.2
3,185,421	+				-0.2
3,185,421	+				+0.3
3,185,426	+				-0.5
3,185,427	+				+0.1
3,185,434	-				+0.4
3,185,434	-				-0.1
3,185,435	-				-2.2
3,185,450	+		GFF3114	0.11	+0.5
3,185,463	-		GFF3114	0.11	-0.9
3,185,468	-		GFF3114	0.11	+0.6
3,185,494	+		GFF3114	0.13	+1.3
3,185,502	-		GFF3114	0.13	+0.6
3,185,503	+		GFF3114	0.13	-0.9
3,185,515	+		GFF3114	0.14	-1.8
3,185,524	+		GFF3114	0.14	-0.2
3,185,543	-		GFF3114	0.15	-1.3
3,185,551	-		GFF3114	0.15	+1.0
3,185,574	+		GFF3114	0.17	-0.5
3,185,579	+		GFF3114	0.17	+0.7
3,185,582	-		GFF3114	0.17	-1.7
3,185,588	+		GFF3114	0.17	+0.7
3,185,592	-		GFF3114	0.17	-2.2
3,185,592	-		GFF3114	0.17	+1.3
3,185,592	-		GFF3114	0.17	-0.7
3,185,618	-		GFF3114	0.19	+0.4
3,185,629	+		GFF3114	0.19	+0.4
3,185,629	+		GFF3114	0.19	-1.0
3,185,637	-		GFF3114	0.20	-0.3
3,185,706	-		GFF3114	0.23	-0.9
3,185,742	-		GFF3114	0.25	-0.5
3,185,761	-		GFF3114	0.26	+0.4
3,185,768	+		GFF3114	0.26	-0.7
3,185,815	+		GFF3114	0.28	-0.2
3,185,815	+		GFF3114	0.28	-1.5
3,185,821	-		GFF3114	0.28	+0.1
3,185,823	-		GFF3114	0.29	-2.6
3,185,823	-		GFF3114	0.29	+0.8
3,185,823	-		GFF3114	0.29	-1.1
3,185,909	-		GFF3114	0.33	-0.1
3,185,914	+		GFF3114	0.33	-0.7
3,185,914	+		GFF3114	0.33	+0.0
3,185,914	+		GFF3114	0.33	-0.0
3,185,919	-		GFF3114	0.33	-2.1
3,185,922	-		GFF3114	0.33	-0.4
3,185,922	-		GFF3114	0.33	-0.6
3,185,922	-		GFF3114	0.33	-0.3
3,185,927	+		GFF3114	0.34	-0.4
3,185,933	+		GFF3114	0.34	+0.3
3,185,964	-		GFF3114	0.35	+0.7
3,185,977	-		GFF3114	0.36	-1.7
3,186,017	-		GFF3114	0.38	+0.3
3,186,033	-		GFF3114	0.39	+0.1
3,186,038	-		GFF3114	0.39	-0.6
3,186,038	-		GFF3114	0.39	-0.6
3,186,060	+		GFF3114	0.40	+0.2
3,186,068	-		GFF3114	0.40	-0.1
3,186,090	-		GFF3114	0.41	-0.8
3,186,091	+		GFF3114	0.41	-0.3
3,186,099	-		GFF3114	0.42	-1.9
3,186,099	-		GFF3114	0.42	-0.3
3,186,136	-		GFF3114	0.44	-1.1
3,186,164	+		GFF3114	0.45	-2.1
3,186,165	+		GFF3114	0.45	+0.5
3,186,165	+		GFF3114	0.45	-1.5
3,186,165	+		GFF3114	0.45	-1.1
3,186,165	+		GFF3114	0.45	-0.5
3,186,165	+		GFF3114	0.45	-0.4
3,186,167	-		GFF3114	0.45	-0.7
3,186,172	-		GFF3114	0.45	+0.2
3,186,172	-		GFF3114	0.45	-0.6
3,186,173	-		GFF3114	0.45	-0.2
3,186,173	-		GFF3114	0.45	-0.4
3,186,247	+		GFF3114	0.49	+1.3
3,186,274	+		GFF3114	0.50	-1.7
3,186,277	-		GFF3114	0.50	-1.7
3,186,278	+		GFF3114	0.51	+1.7
3,186,282	-		GFF3114	0.51	+0.0
3,186,318	+		GFF3114	0.52	+0.5
3,186,325	+		GFF3114	0.53	-1.3
3,186,326	-		GFF3114	0.53	-0.3
3,186,328	+		GFF3114	0.53	+0.7
3,186,330	+		GFF3114	0.53	-0.9
3,186,336	-		GFF3114	0.53	-0.1
3,186,336	-		GFF3114	0.53	+0.9
3,186,336	-		GFF3114	0.53	+0.6
3,186,336	-		GFF3114	0.53	+0.7
3,186,336	-		GFF3114	0.53	-0.3
3,186,336	-		GFF3114	0.53	+1.1
3,186,336	-		GFF3114	0.53	+0.5
3,186,367	-		GFF3114	0.55	+0.5
3,186,367	-		GFF3114	0.55	+0.1
3,186,372	-		GFF3114	0.55	-1.0
3,186,377	-		GFF3114	0.55	+0.0
3,186,379	-		GFF3114	0.55	+1.0
3,186,386	-		GFF3114	0.56	-0.6
3,186,396	+		GFF3114	0.56	-0.5
3,186,460	-		GFF3114	0.59	-1.3
3,186,495	-		GFF3114	0.61	+0.1
3,186,512	-		GFF3114	0.62	-0.8
3,186,541	-		GFF3114	0.63	-1.5
3,186,565	+		GFF3114	0.64	+0.1
3,186,565	+		GFF3114	0.64	-0.3
3,186,573	-		GFF3114	0.65	+1.9
3,186,602	+		GFF3114	0.66	+0.6
3,186,649	+		GFF3114	0.68	+0.8
3,186,651	-		GFF3114	0.68	+0.6
3,186,651	-		GFF3114	0.68	+0.5
3,186,654	+		GFF3114	0.69	+1.3
3,186,654	+		GFF3114	0.69	-0.1
3,186,657	-		GFF3114	0.69	+0.2
3,186,662	-		GFF3114	0.69	+0.9
3,186,683	-		GFF3114	0.70	+0.0
3,186,693	+		GFF3114	0.71	+0.4
3,186,701	-		GFF3114	0.71	-1.3
3,186,718	+		GFF3114	0.72	+0.0
3,186,718	+		GFF3114	0.72	-0.1
3,186,718	+		GFF3114	0.72	-0.3
3,186,718	+		GFF3114	0.72	+0.5
3,186,718	+		GFF3114	0.72	-0.5
3,186,718	+		GFF3114	0.72	+1.7
3,186,718	+		GFF3114	0.72	+1.2
3,186,718	+		GFF3114	0.72	+1.2
3,186,718	+		GFF3114	0.72	-1.1
3,186,718	+		GFF3114	0.72	-0.4
3,186,718	+		GFF3114	0.72	-1.8
3,186,726	-		GFF3114	0.72	+0.8
3,186,726	-		GFF3114	0.72	-0.1
3,186,726	-		GFF3114	0.72	-1.5
3,186,726	-		GFF3114	0.72	+0.7
3,186,726	-		GFF3114	0.72	+0.2
3,186,726	-		GFF3114	0.72	-0.3
3,186,726	-		GFF3114	0.72	-0.7
3,186,735	+		GFF3114	0.73	-0.9
3,186,739	+		GFF3114	0.73	+1.3
3,186,739	+		GFF3114	0.73	+0.2
3,186,739	+		GFF3114	0.73	-0.8
3,186,744	+		GFF3114	0.73	-1.7
3,186,744	+		GFF3114	0.73	-0.3
3,186,744	+		GFF3114	0.73	+0.9
3,186,753	+		GFF3114	0.73	+0.1
3,186,755	+		GFF3114	0.74	-1.2
3,186,777	+		GFF3114	0.75	-0.3
3,186,785	-		GFF3114	0.75	-0.4
3,186,785	-		GFF3114	0.75	+0.5
3,186,799	+		GFF3114	0.76	-2.3
3,186,805	-		GFF3114	0.76	-0.2
3,186,805	-		GFF3114	0.76	+0.1
3,186,843	+		GFF3114	0.78	+1.3
3,186,843	+		GFF3114	0.78	-1.9
3,186,843	+		GFF3114	0.78	-0.9
3,186,851	-		GFF3114	0.78	+0.1
3,186,851	-		GFF3114	0.78	-0.5
3,186,851	-		GFF3114	0.78	+0.2
3,186,868	+		GFF3114	0.79	-1.5
3,186,918	+		GFF3114	0.81	-1.6
3,186,928	+		GFF3114	0.82	+0.9
3,186,928	+		GFF3114	0.82	-0.3
3,186,928	+		GFF3114	0.82	+0.7
3,186,928	+		GFF3114	0.82	+1.4
3,186,928	+		GFF3114	0.82	+0.1
3,186,928	+		GFF3114	0.82	-0.4
3,186,928	+		GFF3114	0.82	+0.0
3,186,928	+		GFF3114	0.82	-0.6
3,186,928	+		GFF3114	0.82	+0.4
3,186,928	+		GFF3114	0.82	+0.4
3,186,928	+		GFF3114	0.82	+0.5
3,186,928	+		GFF3114	0.82	-1.2
3,186,928	+		GFF3114	0.82	+0.4
3,186,936	-		GFF3114	0.82	+0.9
3,186,936	-		GFF3114	0.82	+1.3
3,186,936	-		GFF3114	0.82	-1.3
3,186,936	-		GFF3114	0.82	+1.2
3,186,936	-		GFF3114	0.82	+0.0
3,186,936	-		GFF3114	0.82	+0.2
3,186,936	-		GFF3114	0.82	+1.4
3,186,936	-		GFF3114	0.82	-0.5
3,186,936	-		GFF3114	0.82	-2.7
3,186,936	-		GFF3114	0.82	+0.2
3,186,942	+		GFF3114	0.83	-0.1
3,186,942	+		GFF3114	0.83	-0.1
3,186,946	-		GFF3114	0.83	-1.5
3,186,947	+		GFF3114	0.83	+0.5
3,186,954	+		GFF3114	0.83	+0.2
3,186,954	+		GFF3114	0.83	+1.5
3,186,985	-		GFF3114	0.85	+0.2
3,187,002	+		GFF3114	0.85	+0.4
3,187,016	+		GFF3114	0.86	-0.1
3,187,031	+		GFF3114	0.87	+0.3
3,187,031	+		GFF3114	0.87	-0.5
3,187,044	-		GFF3114	0.87	+0.0
3,187,048	+		GFF3114	0.88	-0.6
3,187,054	-		GFF3114	0.88	+0.8
3,187,056	-		GFF3114	0.88	-0.1
3,187,056	-		GFF3114	0.88	-1.6
3,187,056	-		GFF3114	0.88	-1.4
3,187,062	-		GFF3114	0.88	-0.2
3,187,063	-		GFF3114	0.88	+0.2
3,187,064	-		GFF3114	0.88	-0.2
3,187,064	-		GFF3114	0.88	+0.6
3,187,066	+		GFF3114	0.89	+0.4
3,187,066	+		GFF3114	0.89	-1.0
3,187,090	-		GFF3114	0.90	+0.1
3,187,097	-				-0.2
3,187,136	+				+0.8
3,187,144	-				-0.9
3,187,144	-				-0.5
3,187,146	-				+0.3
3,187,146	-				-0.4
3,187,146	-				+0.7
3,187,164	-				+0.3
3,187,166	+				-1.7
3,187,171	+				-0.2
3,187,174	-				+0.7
3,187,179	-				-0.6
3,187,179	-				-0.3
3,187,192	-				-1.4
3,187,192	-				-0.7
3,187,206	-				-0.6
3,187,208	-				-0.3
3,187,208	-				-0.7
3,187,243	-				+0.7
3,187,268	+				+0.8
3,187,278	+				-0.9
3,187,278	+				-2.1
3,187,278	+				+0.1
3,187,286	-				-0.3
3,187,286	-				+0.2
3,187,286	-				-0.1
3,187,286	-				-0.8
3,187,286	-				+0.3
3,187,286	-				-0.1
3,187,286	-				+1.3
3,187,286	-				-0.3
3,187,286	-				+0.9
3,187,320	+				-2.0
3,187,332	+				-0.9
3,187,350	-				-0.5
3,187,363	+				+0.3
3,188,283	-				+0.0
3,188,295	+				+0.3