Strain Fitness in Sphingobium sp. HT1-2 around GFF3111

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,181,698	+				+0.9
3,181,734	+				+0.8
3,181,734	+				+0.9
3,181,742	+				-0.8
3,181,742	-				-0.1
3,181,750	-				+0.7
3,181,750	-				-0.6
3,181,753	+				-0.0
3,181,761	-				+0.2
3,181,761	-				-0.7
3,181,788	-				-1.5
3,181,788	-				+0.9
3,181,862	+				-2.8
3,181,869	-				-0.3
3,181,889	-				-1.3
3,181,895	+		GFF3110	0.10	-0.4
3,181,903	-		GFF3110	0.11	+1.6
3,181,903	-		GFF3110	0.11	+0.0
3,181,912	+		GFF3110	0.12	+0.7
3,181,918	-		GFF3110	0.13	-1.3
3,181,920	-		GFF3110	0.13	+0.2
3,181,922	+		GFF3110	0.14	-1.0
3,181,927	+		GFF3110	0.14	-0.2
3,181,929	+		GFF3110	0.14	-1.6
3,181,929	+		GFF3110	0.14	+0.7
3,181,930	-		GFF3110	0.14	-1.3
3,181,935	+		GFF3110	0.15	-1.4
3,181,937	-		GFF3110	0.15	-0.3
3,181,937	-		GFF3110	0.15	-0.7
3,181,937	-		GFF3110	0.15	+0.3
3,181,937	-		GFF3110	0.15	-0.5
3,181,937	-		GFF3110	0.15	+0.3
3,181,939	+		GFF3110	0.16	-0.6
3,181,939	+		GFF3110	0.16	+0.6
3,181,943	-		GFF3110	0.16	-0.2
3,181,943	-		GFF3110	0.16	+0.8
3,181,947	-		GFF3110	0.17	-0.6
3,181,947	-		GFF3110	0.17	-1.0
3,181,947	-		GFF3110	0.17	-2.8
3,181,947	-		GFF3110	0.17	-0.4
3,181,953	+		GFF3110	0.17	-0.2
3,181,965	+		GFF3110	0.19	-1.0
3,181,982	-		GFF3110	0.21	+1.7
3,182,023	+		GFF3110	0.26	-1.5
3,182,038	+		GFF3110	0.28	-0.1
3,182,046	-		GFF3110	0.29	+0.2
3,182,046	-		GFF3110	0.29	-1.6
3,182,089	+		GFF3110	0.34	-0.6
3,182,091	+		GFF3110	0.34	+1.4
3,182,101	-		GFF3110	0.35	-0.8
3,182,106	-		GFF3110	0.36	-0.1
3,182,106	-		GFF3110	0.36	+0.3
3,182,126	-		GFF3110	0.38	+0.0
3,182,127	-		GFF3110	0.38	-0.0
3,182,144	+		GFF3110	0.41	-1.7
3,182,185	+		GFF3110	0.45	-1.8
3,182,185	+		GFF3110	0.45	-0.8
3,182,185	+		GFF3110	0.45	-0.6
3,182,185	+		GFF3110	0.45	-1.6
3,182,193	-		GFF3110	0.46	-0.0
3,182,193	-		GFF3110	0.46	-0.1
3,182,202	-		GFF3110	0.48	-1.2
3,182,202	-		GFF3110	0.48	+0.3
3,182,217	-		GFF3110	0.49	-1.0
3,182,225	+		GFF3110	0.50	+0.4
3,182,247	+		GFF3110	0.53	-0.4
3,182,247	+		GFF3110	0.53	-0.2
3,182,255	-		GFF3110	0.54	-1.0
3,182,266	+		GFF3110	0.55	-0.3
3,182,267	+		GFF3110	0.55	-0.9
3,182,282	-		GFF3110	0.57	-0.7
3,182,321	+		GFF3110	0.62	+0.7
3,182,326	+		GFF3110	0.63	-0.9
3,182,326	+		GFF3110	0.63	+1.0
3,182,326	+		GFF3110	0.63	+0.2
3,182,326	+		GFF3110	0.63	+0.6
3,182,326	+		GFF3110	0.63	-0.4
3,182,326	+		GFF3110	0.63	-1.5
3,182,326	+		GFF3110	0.63	-0.8
3,182,334	-		GFF3110	0.64	-1.5
3,182,344	+		GFF3110	0.65	-0.7
3,182,352	-		GFF3110	0.66	-0.4
3,182,352	-		GFF3110	0.66	-0.3
3,182,383	-		GFF3110	0.70	+1.3
3,182,391	+		GFF3110	0.71	-0.2
3,182,391	+		GFF3110	0.71	-0.6
3,182,399	-		GFF3110	0.72	+0.8
3,182,404	+		GFF3110	0.72	+0.9
3,182,415	+		GFF3110	0.73	-0.1
3,182,415	+		GFF3110	0.73	-0.7
3,182,415	+		GFF3110	0.73	+0.5
3,182,415	+		GFF3110	0.73	+0.7
3,182,415	+		GFF3110	0.73	-0.9
3,182,415	+		GFF3110	0.73	-0.1
3,182,415	+		GFF3110	0.73	+0.4
3,182,415	+		GFF3110	0.73	-0.1
3,182,415	+		GFF3110	0.73	-0.1
3,182,415	+		GFF3110	0.73	-0.4
3,182,415	+		GFF3110	0.73	-2.0
3,182,415	+		GFF3110	0.73	+0.7
3,182,415	+		GFF3110	0.73	+0.5
3,182,415	+		GFF3110	0.73	-1.1
3,182,415	+		GFF3110	0.73	+1.0
3,182,415	+		GFF3110	0.73	-0.8
3,182,415	+		GFF3110	0.73	-0.9
3,182,415	+		GFF3110	0.73	+0.3
3,182,415	+		GFF3110	0.73	+0.3
3,182,415	+		GFF3110	0.73	+0.3
3,182,415	+		GFF3110	0.73	-2.7
3,182,415	+		GFF3110	0.73	-0.2
3,182,415	+		GFF3110	0.73	+0.2
3,182,415	+		GFF3110	0.73	-0.5
3,182,415	+		GFF3110	0.73	-0.4
3,182,415	+		GFF3110	0.73	-0.2
3,182,415	+		GFF3110	0.73	-2.7
3,182,415	+		GFF3110	0.73	+0.7
3,182,415	+		GFF3110	0.73	-0.3
3,182,415	+		GFF3110	0.73	+0.7
3,182,423	-		GFF3110	0.74	-0.3
3,182,423	-		GFF3110	0.74	+0.4
3,182,423	-		GFF3110	0.74	+0.1
3,182,423	-		GFF3110	0.74	-1.1
3,182,423	-		GFF3110	0.74	+0.1
3,182,423	-		GFF3110	0.74	-0.7
3,182,423	-		GFF3110	0.74	+0.4
3,182,423	-		GFF3110	0.74	-0.2
3,182,423	-		GFF3110	0.74	-0.6
3,182,423	-		GFF3110	0.74	-1.2
3,182,423	-		GFF3110	0.74	-1.1
3,182,423	-		GFF3110	0.74	+0.5
3,182,423	-		GFF3110	0.74	+0.2
3,182,423	-		GFF3110	0.74	-2.0
3,182,423	-		GFF3110	0.74	-0.5
3,182,423	-		GFF3110	0.74	-1.8
3,182,423	-		GFF3110	0.74	-1.2
3,182,423	-		GFF3110	0.74	-0.3
3,182,423	-		GFF3110	0.74	+0.5
3,182,423	-		GFF3110	0.74	-1.4
3,182,423	-		GFF3110	0.74	-1.6
3,182,423	-		GFF3110	0.74	-1.3
3,182,423	-		GFF3110	0.74	+0.4
3,182,423	-		GFF3110	0.74	-0.4
3,182,423	-		GFF3110	0.74	-1.3
3,182,423	-		GFF3110	0.74	-0.7
3,182,423	-		GFF3110	0.74	+0.1
3,182,423	-		GFF3110	0.74	-0.5
3,182,423	-		GFF3110	0.74	+0.7
3,182,423	-		GFF3110	0.74	-0.7
3,182,423	-		GFF3110	0.74	-0.2
3,182,423	-		GFF3110	0.74	-0.4
3,182,423	-		GFF3110	0.74	+0.0
3,182,423	-		GFF3110	0.74	-0.1
3,182,423	-		GFF3110	0.74	+0.2
3,182,423	-		GFF3110	0.74	+0.6
3,182,425	+		GFF3110	0.75	+0.1
3,182,425	+		GFF3110	0.75	-0.2
3,182,428	-		GFF3110	0.75	+0.6
3,182,444	+		GFF3110	0.77	-1.1
3,182,451	+		GFF3110	0.78	-1.8
3,182,504	-		GFF3110	0.84	-1.3
3,182,504	-		GFF3110	0.84	-0.1
3,182,549	+		GFF3110	0.90	-0.7
3,182,549	-		GFF3110	0.90	+0.8
3,182,561	+				+0.5
3,182,561	+				-0.4
3,182,561	+				-0.7
3,182,561	+				-1.5
3,182,561	+				-1.7
3,182,561	+				+1.3
3,182,561	+				+0.2
3,182,561	+				-0.8
3,182,564	-				-0.4
3,182,564	-				-1.4
3,182,569	-				-0.2
3,182,569	-				-0.9
3,182,569	-				-0.9
3,182,569	-				+0.2
3,182,569	-				-1.0
3,182,569	-				+0.6
3,182,569	-				-1.8
3,182,569	-				+0.4
3,182,569	-				-1.3
3,182,569	-				-0.5
3,182,569	-				+1.0
3,182,569	-				-1.0
3,182,569	-				+0.3
3,182,569	-				+0.3
3,182,569	-				-0.7
3,182,569	-				-0.4
3,182,569	-				-1.2
3,182,634	+				-2.7
3,182,642	-				-0.3
3,182,687	-				-0.2
3,182,690	+				+0.0
3,182,690	+				+0.7
3,182,698	+				+0.6
3,182,698	+				+1.0
3,182,704	+				+0.5
3,182,704	+				+0.3
3,182,712	-				-0.7
3,182,795	+		GFF3111	0.11	-0.6
3,182,803	-		GFF3111	0.12	-0.6
3,182,843	-		GFF3111	0.16	-0.5
3,182,844	+		GFF3111	0.16	+0.3
3,182,854	+		GFF3111	0.17	-0.2
3,182,876	-		GFF3111	0.20	-0.2
3,182,878	-		GFF3111	0.20	-1.0
3,182,880	+		GFF3111	0.20	-0.4
3,182,880	+		GFF3111	0.20	-1.0
3,182,892	+		GFF3111	0.21	+0.6
3,182,892	+		GFF3111	0.21	+0.7
3,182,892	+		GFF3111	0.21	-0.2
3,182,892	+		GFF3111	0.21	-0.0
3,182,900	-		GFF3111	0.22	-1.0
3,182,900	-		GFF3111	0.22	+0.3
3,182,900	-		GFF3111	0.22	-0.6
3,182,900	-		GFF3111	0.22	+0.1
3,182,900	-		GFF3111	0.22	-2.4
3,182,900	-		GFF3111	0.22	-0.8
3,182,900	-		GFF3111	0.22	+0.0
3,182,900	-		GFF3111	0.22	-2.8
3,182,900	-		GFF3111	0.22	-2.3
3,182,907	-		GFF3111	0.23	-0.9
3,182,907	-		GFF3111	0.23	-1.5
3,182,909	+		GFF3111	0.23	-3.1
3,182,911	-		GFF3111	0.24	-0.0
3,182,911	-		GFF3111	0.24	-1.1
3,182,911	-		GFF3111	0.24	+0.3
3,182,911	-		GFF3111	0.24	+0.2
3,182,922	+		GFF3111	0.25	-1.3
3,182,930	-		GFF3111	0.26	-1.3
3,182,954	-		GFF3111	0.28	-0.3
3,182,963	+		GFF3111	0.29	+0.3
3,182,964	-		GFF3111	0.29	-1.3
3,182,965	-		GFF3111	0.29	-1.8
3,182,980	+		GFF3111	0.31	-0.3
3,182,981	+		GFF3111	0.31	+0.4
3,182,986	+		GFF3111	0.32	-1.7
3,182,988	-		GFF3111	0.32	-1.5
3,182,988	-		GFF3111	0.32	-1.4
3,182,988	-		GFF3111	0.32	+0.4
3,182,988	-		GFF3111	0.32	-0.3
3,182,988	-		GFF3111	0.32	-1.0
3,183,007	-		GFF3111	0.34	+1.5
3,183,051	-		GFF3111	0.39	+0.3
3,183,105	-		GFF3111	0.44	-0.7
3,183,127	-		GFF3111	0.47	-0.5
3,183,127	-		GFF3111	0.47	+0.0
3,183,127	-		GFF3111	0.47	+1.2
3,183,128	-		GFF3111	0.47	-0.1
3,183,150	+		GFF3111	0.49	+0.5
3,183,164	-		GFF3111	0.51	-0.8
3,183,165	-		GFF3111	0.51	-0.3
3,183,190	-		GFF3111	0.54	+1.7
3,183,195	-		GFF3111	0.54	+0.8
3,183,213	+		GFF3111	0.56	-0.2
3,183,213	+		GFF3111	0.56	-1.3
3,183,213	+		GFF3111	0.56	-0.7
3,183,213	+		GFF3111	0.56	-0.4
3,183,213	+		GFF3111	0.56	-0.3
3,183,213	+		GFF3111	0.56	-0.0
3,183,213	+		GFF3111	0.56	+0.6
3,183,221	-		GFF3111	0.57	-0.3
3,183,221	-		GFF3111	0.57	-0.5
3,183,221	-		GFF3111	0.57	-0.2
3,183,221	-		GFF3111	0.57	-1.6
3,183,221	-		GFF3111	0.57	+0.3
3,183,223	-		GFF3111	0.57	-0.6
3,183,230	+		GFF3111	0.58	-1.1
3,183,243	+		GFF3111	0.59	+0.7
3,183,246	+		GFF3111	0.60	-1.5
3,183,342	+		GFF3111	0.70	-0.5
3,183,342	+		GFF3111	0.70	+1.3
3,183,342	+		GFF3111	0.70	+1.2
3,183,342	+		GFF3111	0.70	+0.4
3,183,342	+		GFF3111	0.70	-0.3
3,183,342	+		GFF3111	0.70	+0.8
3,183,350	-		GFF3111	0.71	+0.9
3,183,350	-		GFF3111	0.71	-2.3
3,183,355	+		GFF3111	0.71	+0.3
3,183,374	+		GFF3111	0.73	+0.8
3,183,382	-		GFF3111	0.74	-2.1
3,183,403	+		GFF3111	0.77	+0.3
3,183,403	+		GFF3111	0.77	-0.9
3,183,414	+		GFF3111	0.78	-1.4
3,183,414	+		GFF3111	0.78	+0.2
3,183,414	+		GFF3111	0.78	+0.7
3,183,414	+		GFF3111	0.78	-0.0
3,183,414	+		GFF3111	0.78	-0.5
3,183,414	+		GFF3111	0.78	-0.3
3,183,414	+		GFF3111	0.78	-0.8
3,183,414	+		GFF3111	0.78	+0.1
3,183,422	-		GFF3111	0.79	-0.9
3,183,422	-		GFF3111	0.79	+0.2
3,183,422	-		GFF3111	0.79	+0.2
3,183,422	-		GFF3111	0.79	+0.8
3,183,422	-		GFF3111	0.79	-0.5
3,183,422	-		GFF3111	0.79	+0.5
3,183,422	-		GFF3111	0.79	-0.1
3,183,422	-		GFF3111	0.79	+1.0
3,183,422	-		GFF3111	0.79	-0.4
3,183,458	+		GFF3111	0.83	-0.5
3,183,458	+		GFF3111	0.83	-0.6
3,183,466	-		GFF3111	0.83	-0.1
3,183,466	-		GFF3111	0.83	+0.1
3,183,511	+		GFF3111	0.88	-0.0
3,183,511	+		GFF3111	0.88	-1.6
3,183,550	+				+0.9
3,183,554	+				+0.9
3,183,570	+				+0.0
3,183,570	+				+0.1
3,183,583	+				+0.4
3,183,585	+				+0.1
3,183,598	-				-0.9
3,183,598	-				-2.8
3,183,604	-				+0.5
3,183,626	+				-0.2
3,183,629	-				-0.3
3,183,630	-				-2.2
3,183,635	-				+0.4
3,183,637	-				+0.0
3,183,637	-				+0.3
3,183,637	-				+1.1
3,183,647	+				+0.9
3,183,670	-				-0.4
3,183,708	-				+0.1
3,183,721	-				+1.1
3,183,734	+				+0.0
3,183,806	+				+0.3
3,183,808	+				-0.5
3,183,814	-				+0.9
3,183,814	-				+0.6
3,183,814	-				+1.0
3,183,814	-				+0.8
3,183,816	-		GFF3112	0.10	-1.7
3,183,816	-		GFF3112	0.10	+0.2
3,183,816	-		GFF3112	0.10	+1.0
3,183,818	+		GFF3112	0.10	+0.3
3,183,824	+		GFF3112	0.11	+0.1
3,183,826	-		GFF3112	0.11	+0.1
3,183,826	-		GFF3112	0.11	+0.4
3,183,832	-		GFF3112	0.12	-0.1
3,183,833	+		GFF3112	0.12	-1.1
3,183,855	+		GFF3112	0.15	-0.6
3,183,862	-		GFF3112	0.15	-0.3
3,183,877	+		GFF3112	0.17	-1.4
3,183,882	+		GFF3112	0.18	-1.7
3,183,882	+		GFF3112	0.18	-0.3
3,183,882	+		GFF3112	0.18	-0.8
3,183,902	+		GFF3112	0.20	-0.1
3,183,902	+		GFF3112	0.20	+0.3
3,183,902	+		GFF3112	0.20	+0.3
3,183,902	+		GFF3112	0.20	-0.9
3,183,902	+		GFF3112	0.20	-1.5
3,183,902	+		GFF3112	0.20	+1.5
3,183,902	+		GFF3112	0.20	-0.4
3,183,906	+		GFF3112	0.21	+0.7
3,183,907	+		GFF3112	0.21	-0.1
3,183,907	+		GFF3112	0.21	+0.1
3,183,907	+		GFF3112	0.21	-0.9
3,183,910	-		GFF3112	0.21	-0.4
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