Strain Fitness in Sphingobium sp. HT1-2 around GFF3108

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,178,433	+		GFF3106	0.66	-2.0
3,178,433	+		GFF3106	0.66	+0.2
3,178,433	+		GFF3106	0.66	-0.7
3,178,440	+		GFF3106	0.67	+0.1
3,178,441	-		GFF3106	0.67	-2.1
3,178,441	-		GFF3106	0.67	+0.0
3,178,442	-		GFF3106	0.67	-0.4
3,178,467	+		GFF3106	0.69	-1.4
3,178,472	+		GFF3106	0.69	+1.1
3,178,475	-		GFF3106	0.70	-0.8
3,178,475	-		GFF3106	0.70	-0.1
3,178,482	-		GFF3106	0.70	-1.5
3,178,486	+		GFF3106	0.71	-1.5
3,178,490	+		GFF3106	0.71	+0.4
3,178,490	+		GFF3106	0.71	-0.6
3,178,491	+		GFF3106	0.71	+0.8
3,178,491	+		GFF3106	0.71	+0.5
3,178,494	-		GFF3106	0.71	-0.6
3,178,514	-		GFF3106	0.73	+0.3
3,178,530	+		GFF3106	0.75	-1.1
3,178,572	+		GFF3106	0.78	+0.1
3,178,574	-		GFF3106	0.78	+1.6
3,178,603	-		GFF3106	0.81	-0.8
3,178,627	-		GFF3106	0.83	-0.7
3,178,628	+		GFF3106	0.83	-0.9
3,178,636	-		GFF3106	0.84	-0.5
3,178,636	-		GFF3106	0.84	-0.3
3,178,649	+		GFF3106	0.85	-1.0
3,178,649	+		GFF3106	0.85	+0.3
3,178,656	-		GFF3106	0.86	+0.8
3,178,656	-		GFF3106	0.86	+0.8
3,178,657	-		GFF3106	0.86	-2.6
3,178,662	+		GFF3106	0.86	+0.3
3,178,670	-		GFF3106	0.87	+0.8
3,178,670	-		GFF3106	0.87	+0.7
3,178,670	-		GFF3106	0.87	-0.5
3,178,697	-		GFF3106	0.89	-0.4
3,178,704	+		GFF3106	0.90	+0.4
3,178,709	+				-0.1
3,178,709	+				-0.7
3,178,709	+				-0.8
3,178,717	-				-1.7
3,178,717	-				+0.1
3,178,717	-				+1.3
3,178,727	+				+1.5
3,178,727	+				-1.5
3,178,727	+				-1.0
3,178,727	+				-0.6
3,178,727	+				+0.3
3,178,727	+				-1.2
3,178,727	+				-1.5
3,178,727	+				-0.7
3,178,727	+				-1.5
3,178,727	+				-0.8
3,178,727	+				-0.1
3,178,727	+				-0.0
3,178,732	+				+0.1
3,178,733	-				-0.4
3,178,735	-				+0.0
3,178,735	-				-0.6
3,178,735	-				-0.1
3,178,735	-				+0.7
3,178,735	-				-1.4
3,178,735	-				-0.7
3,178,735	-				+1.4
3,178,735	-				+0.1
3,178,735	-				+1.5
3,178,735	-				-0.9
3,178,736	-				-1.3
3,178,754	-				-0.2
3,178,765	+				-0.3
3,178,770	+				-1.2
3,178,770	+				+0.8
3,178,770	+				-0.1
3,178,773	-				+0.3
3,178,774	-				+1.2
3,178,778	-				+0.4
3,178,778	-				-1.1
3,178,778	-				+0.3
3,178,778	-				-1.0
3,178,778	-				+0.5
3,178,778	-				+0.5
3,178,793	-				-0.6
3,178,804	+				-0.4
3,178,806	+				+0.2
3,178,806	+				-0.7
3,178,806	+				-0.7
3,178,810	-				-1.2
3,178,811	+				-0.8
3,178,814	-				-1.9
3,178,825	+				+1.3
3,178,833	-				-1.5
3,178,833	-				+1.6
3,178,857	+				-0.1
3,178,857	+				+0.1
3,178,865	-				+1.1
3,178,877	-		GFF3107	0.11	+0.3
3,178,878	+		GFF3107	0.11	-1.3
3,178,884	-		GFF3107	0.12	-1.1
3,178,909	+		GFF3107	0.16	+0.4
3,178,926	+		GFF3107	0.19	-0.8
3,178,926	+		GFF3107	0.19	-0.5
3,178,934	-		GFF3107	0.20	-0.3
3,178,950	+		GFF3107	0.23	-0.2
3,178,958	-		GFF3107	0.24	-0.7
3,178,989	+		GFF3107	0.29	+0.7
3,178,989	+		GFF3107	0.29	+0.7
3,178,989	+		GFF3107	0.29	-1.3
3,178,989	+		GFF3107	0.29	-0.6
3,178,989	+		GFF3107	0.29	-0.0
3,178,989	+		GFF3107	0.29	+0.1
3,178,989	+		GFF3107	0.29	+0.7
3,178,989	+		GFF3107	0.29	+0.5
3,178,989	+		GFF3107	0.29	-0.5
3,178,997	-		GFF3107	0.31	+0.4
3,178,997	-		GFF3107	0.31	-0.4
3,178,997	-		GFF3107	0.31	+0.3
3,178,997	-		GFF3107	0.31	+0.2
3,179,006	+		GFF3107	0.32	-2.2
3,179,014	-		GFF3107	0.34	+0.5
3,179,019	-		GFF3107	0.35	+0.3
3,179,019	-		GFF3107	0.35	+0.1
3,179,022	+		GFF3107	0.35	-1.4
3,179,035	+		GFF3107	0.37	-0.4
3,179,051	+		GFF3107	0.40	+0.7
3,179,061	+		GFF3107	0.42	+0.5
3,179,069	-		GFF3107	0.43	-1.7
3,179,069	-		GFF3107	0.43	-0.1
3,179,069	-		GFF3107	0.43	-1.2
3,179,071	+		GFF3107	0.43	+0.7
3,179,074	-		GFF3107	0.44	+0.5
3,179,081	+		GFF3107	0.45	-1.4
3,179,081	+		GFF3107	0.45	-0.5
3,179,086	-		GFF3107	0.46	-2.5
3,179,089	-		GFF3107	0.46	+1.0
3,179,097	+		GFF3107	0.48	-0.5
3,179,097	+		GFF3107	0.48	-1.1
3,179,119	-		GFF3107	0.51	-2.3
3,179,173	-		GFF3107	0.60	-2.3
3,179,191	+		GFF3107	0.63	-0.7
3,179,191	+		GFF3107	0.63	-0.0
3,179,191	+		GFF3107	0.63	-0.5
3,179,191	+		GFF3107	0.63	-0.8
3,179,191	+		GFF3107	0.63	+1.0
3,179,191	+		GFF3107	0.63	+0.5
3,179,191	+		GFF3107	0.63	+0.6
3,179,191	+		GFF3107	0.63	-0.7
3,179,191	+		GFF3107	0.63	-0.1
3,179,191	+		GFF3107	0.63	-0.2
3,179,191	+		GFF3107	0.63	-0.1
3,179,191	+		GFF3107	0.63	-1.2
3,179,199	-		GFF3107	0.65	+0.3
3,179,199	-		GFF3107	0.65	+1.1
3,179,199	-		GFF3107	0.65	-2.3
3,179,199	-		GFF3107	0.65	-1.7
3,179,199	-		GFF3107	0.65	-0.8
3,179,199	-		GFF3107	0.65	+0.8
3,179,199	-		GFF3107	0.65	-0.4
3,179,199	-		GFF3107	0.65	-0.6
3,179,199	-		GFF3107	0.65	-1.3
3,179,199	-		GFF3107	0.65	-1.2
3,179,199	-		GFF3107	0.65	-1.1
3,179,199	-		GFF3107	0.65	+0.5
3,179,199	-		GFF3107	0.65	-2.1
3,179,199	-		GFF3107	0.65	-0.1
3,179,210	-		GFF3107	0.67	+0.5
3,179,221	+		GFF3107	0.69	+0.7
3,179,233	+		GFF3107	0.71	+1.1
3,179,238	+		GFF3107	0.71	-0.6
3,179,245	-		GFF3107	0.73	-2.1
3,179,254	+		GFF3107	0.74	-1.4
3,179,269	+		GFF3107	0.77	-1.0
3,179,326	-		GFF3107	0.86	+0.3
3,179,326	-		GFF3107	0.86	-0.2
3,179,326	-		GFF3107	0.86	-0.0
3,179,329	+		GFF3107	0.87	+0.0
3,179,337	+		GFF3107	0.88	-0.6
3,179,354	-				-0.6
3,179,363	+				+0.1
3,179,420	-				+0.2
3,179,433	-				-0.6
3,179,433	-				+0.4
3,179,433	-				-1.4
3,179,453	+				+0.3
3,179,467	-				+0.2
3,179,467	-				-1.2
3,179,474	+				-1.5
3,179,477	-				+1.5
3,179,485	-		GFF3108	0.10	-1.4
3,179,504	+		GFF3108	0.13	+0.6
3,179,504	+		GFF3108	0.13	-1.0
3,179,504	+		GFF3108	0.13	-0.9
3,179,504	+		GFF3108	0.13	+1.2
3,179,504	+		GFF3108	0.13	-1.8
3,179,504	+		GFF3108	0.13	+0.1
3,179,504	+		GFF3108	0.13	-0.9
3,179,507	+		GFF3108	0.14	-0.3
3,179,512	-		GFF3108	0.15	-0.9
3,179,512	-		GFF3108	0.15	+0.8
3,179,512	-		GFF3108	0.15	-2.0
3,179,512	-		GFF3108	0.15	-0.7
3,179,512	-		GFF3108	0.15	-1.4
3,179,512	-		GFF3108	0.15	-1.5
3,179,512	-		GFF3108	0.15	+0.7
3,179,512	-		GFF3108	0.15	+0.1
3,179,512	-		GFF3108	0.15	-0.0
3,179,545	-		GFF3108	0.20	+0.2
3,179,545	-		GFF3108	0.20	+0.8
3,179,587	-		GFF3108	0.27	-0.0
3,179,588	+		GFF3108	0.27	-0.3
3,179,591	-		GFF3108	0.28	+0.3
3,179,651	-		GFF3108	0.37	+1.0
3,179,656	-		GFF3108	0.38	+0.2
3,179,657	+		GFF3108	0.38	+0.2
3,179,657	+		GFF3108	0.38	-0.3
3,179,657	+		GFF3108	0.38	+1.1
3,179,657	+		GFF3108	0.38	-1.0
3,179,657	+		GFF3108	0.38	-0.0
3,179,660	-		GFF3108	0.39	-2.0
3,179,663	+		GFF3108	0.39	-1.0
3,179,665	-		GFF3108	0.40	-0.3
3,179,665	-		GFF3108	0.40	-0.9
3,179,665	-		GFF3108	0.40	-1.3
3,179,665	-		GFF3108	0.40	-2.5
3,179,665	-		GFF3108	0.40	-0.1
3,179,676	+		GFF3108	0.42	+0.4
3,179,679	-		GFF3108	0.42	+0.7
3,179,681	+		GFF3108	0.42	-0.1
3,179,681	+		GFF3108	0.42	+1.0
3,179,684	-		GFF3108	0.43	+0.5
3,179,694	-		GFF3108	0.44	-0.3
3,179,702	+		GFF3108	0.46	-0.7
3,179,713	-		GFF3108	0.48	+1.6
3,179,738	-		GFF3108	0.52	-0.3
3,179,738	-		GFF3108	0.52	+0.3
3,179,771	+		GFF3108	0.57	-1.5
3,179,790	-		GFF3108	0.60	-0.2
3,179,808	-		GFF3108	0.63	-0.3
3,179,833	+		GFF3108	0.67	+1.1
3,179,833	+		GFF3108	0.67	-0.7
3,179,833	+		GFF3108	0.67	+0.1
3,179,833	+		GFF3108	0.67	-0.4
3,179,841	-		GFF3108	0.68	-1.0
3,179,848	+		GFF3108	0.70	-0.3
3,179,871	-		GFF3108	0.73	-1.5
3,179,871	-		GFF3108	0.73	-2.9
3,179,871	-		GFF3108	0.73	-1.0
3,179,894	-		GFF3108	0.77	-0.0
3,179,894	-		GFF3108	0.77	+1.6
3,179,934	+		GFF3108	0.84	-0.2
3,179,937	-		GFF3108	0.84	+0.2
3,179,937	-		GFF3108	0.84	-1.1
3,179,939	+		GFF3108	0.84	-1.7
3,179,939	+		GFF3108	0.84	+0.1
3,179,939	+		GFF3108	0.84	-0.3
3,179,939	+		GFF3108	0.84	-1.2
3,179,939	+		GFF3108	0.84	+0.2
3,179,939	+		GFF3108	0.84	-1.1
3,179,939	+		GFF3108	0.84	-0.0
3,179,939	+		GFF3108	0.84	-1.1
3,179,939	+		GFF3108	0.84	-0.2
3,179,944	+		GFF3108	0.85	-1.4
3,179,947	-		GFF3108	0.86	+0.4
3,179,947	-		GFF3108	0.86	-2.6
3,179,952	+		GFF3108	0.87	+0.5
3,179,962	+		GFF3108	0.88	+0.2
3,180,011	+				+0.5
3,180,026	-				-0.1
3,180,035	+				+0.4
3,180,064	+				-0.5
3,180,070	+				-1.0
3,180,071	-				-0.8
3,180,072	-				-1.9
3,180,092	+				-1.3
3,180,095	-				+0.1
3,180,110	+				-1.4
3,180,112	-				-0.5
3,180,120	+				-2.4
3,180,128	-				-0.8
3,180,135	-				-0.3
3,180,138	+				+0.7
3,180,145	-				-0.8
3,180,146	+				-2.0
3,180,146	+				+0.2
3,180,154	-				-0.4
3,180,170	+				-1.0
3,180,175	+				+0.7
3,180,183	+				-0.5
3,180,185	+				+0.1
3,180,185	+				+0.2
3,180,188	-				+0.1
3,180,207	+				+1.3
3,180,207	+				+0.2
3,180,227	+				-0.6
3,180,227	+				-0.6
3,180,235	-				-1.2
3,180,264	+				+1.5
3,180,267	-				+1.0
3,180,272	-				+0.5
3,180,278	+				+1.4
3,180,278	+				-0.1
3,180,281	-				-1.4
3,180,288	+				+0.2
3,180,296	-				+0.6
3,180,301	+				-1.1
3,180,301	-				-0.7
3,180,306	+				+0.2
3,180,356	+				-1.9
3,180,394	+		GFF3109	0.12	-0.7
3,180,402	+		GFF3109	0.13	+0.5
3,180,411	-		GFF3109	0.13	+0.9
3,180,419	+		GFF3109	0.14	-0.4
3,180,419	+		GFF3109	0.14	-0.7
3,180,421	+		GFF3109	0.14	-0.2
3,180,440	-		GFF3109	0.15	-1.3
3,180,482	+		GFF3109	0.18	+0.2
3,180,490	+		GFF3109	0.18	-1.8
3,180,552	+		GFF3109	0.22	+0.3
3,180,552	+		GFF3109	0.22	-0.6
3,180,552	+		GFF3109	0.22	-1.0
3,180,552	+		GFF3109	0.22	+0.2
3,180,565	+		GFF3109	0.23	+0.9
3,180,570	+		GFF3109	0.23	+0.7
3,180,570	+		GFF3109	0.23	-0.2
3,180,573	-		GFF3109	0.23	+1.7
3,180,578	-		GFF3109	0.24	+0.4
3,180,585	+		GFF3109	0.24	+0.2
3,180,601	+		GFF3109	0.25	-0.0
3,180,603	-		GFF3109	0.25	+0.3
3,180,611	+		GFF3109	0.26	+1.2
3,180,660	+		GFF3109	0.29	-1.6
3,180,670	+		GFF3109	0.29	-0.6
3,180,670	-		GFF3109	0.29	-0.1
3,180,670	-		GFF3109	0.29	-1.6
3,180,680	+		GFF3109	0.30	-1.9
3,180,737	+		GFF3109	0.33	-0.2
3,180,751	-		GFF3109	0.34	-0.3
3,180,758	+		GFF3109	0.35	+0.1
3,180,766	-		GFF3109	0.35	-0.1
3,180,794	-		GFF3109	0.37	-0.9
3,180,794	-		GFF3109	0.37	+0.5
3,180,807	-		GFF3109	0.38	-0.3
3,180,830	+		GFF3109	0.39	-2.9
3,180,830	+		GFF3109	0.39	-0.5
3,180,830	+		GFF3109	0.39	+0.1
3,180,838	-		GFF3109	0.40	-0.3
3,180,838	-		GFF3109	0.40	+0.2
3,180,838	-		GFF3109	0.40	-1.5
3,180,838	-		GFF3109	0.40	+0.5
3,180,838	-		GFF3109	0.40	-1.3
3,180,838	-		GFF3109	0.40	-0.2
3,180,859	+		GFF3109	0.41	-0.3
3,180,875	+		GFF3109	0.42	-0.4
3,180,878	-		GFF3109	0.42	+0.4
3,180,880	+		GFF3109	0.42	-0.7
3,180,885	+		GFF3109	0.43	+0.3
3,180,901	-		GFF3109	0.44	+1.4
3,180,910	+		GFF3109	0.44	+1.0
3,180,924	+		GFF3109	0.45	-1.1
3,180,924	+		GFF3109	0.45	-1.6
3,180,927	-		GFF3109	0.45	+0.5
3,180,927	-		GFF3109	0.45	+0.3
3,180,932	-		GFF3109	0.45	+0.8
3,180,934	+		GFF3109	0.46	-0.6
3,180,934	+		GFF3109	0.46	-0.2
3,180,934	+		GFF3109	0.46	-0.9
3,180,934	+		GFF3109	0.46	-1.6
3,180,934	+		GFF3109	0.46	-0.8
3,180,934	+		GFF3109	0.46	+0.5
3,180,942	-		GFF3109	0.46	-0.2
3,180,942	-		GFF3109	0.46	+1.7
3,180,942	-		GFF3109	0.46	+0.3
3,180,942	-		GFF3109	0.46	-0.1
3,180,988	+		GFF3109	0.49	-1.5
3,181,005	-		GFF3109	0.50	-1.4
3,181,011	-		GFF3109	0.50	-0.1