Strain Fitness in Sphingobium sp. HT1-2 around GFF3103

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,170,554	-				+0.5
3,170,575	+				-1.2
3,170,575	+				-0.5
3,170,575	+				-2.6
3,170,592	+				+0.7
3,170,628	+				+0.2
3,170,628	+				-0.2
3,170,628	+				-0.6
3,170,687	+				-1.4
3,170,724	+				+0.2
3,170,724	+				-2.5
3,170,729	+				-0.8
3,170,729	+				-0.6
3,170,732	-				-0.1
3,170,732	-				-0.2
3,170,732	-				-1.3
3,170,749	+				-0.1
3,170,755	+				-0.1
3,170,763	-		GFF3102	0.11	+0.8
3,170,763	-		GFF3102	0.11	-0.2
3,170,782	-		GFF3102	0.13	-0.5
3,170,804	-		GFF3102	0.16	-0.4
3,170,827	+		GFF3102	0.18	+0.8
3,170,835	-		GFF3102	0.19	-0.1
3,170,837	+		GFF3102	0.20	-0.7
3,170,837	+		GFF3102	0.20	-1.7
3,170,837	+		GFF3102	0.20	-0.0
3,170,840	-		GFF3102	0.20	+0.4
3,170,845	-		GFF3102	0.21	-0.0
3,170,847	+		GFF3102	0.21	-0.8
3,170,872	+		GFF3102	0.24	-0.7
3,170,877	+		GFF3102	0.25	-0.1
3,170,877	+		GFF3102	0.25	+0.1
3,170,877	+		GFF3102	0.25	+1.4
3,170,877	+		GFF3102	0.25	+0.7
3,170,880	-		GFF3102	0.25	-0.7
3,170,885	-		GFF3102	0.26	-1.5
3,170,913	+		GFF3102	0.29	+0.5
3,170,913	+		GFF3102	0.29	-0.7
3,170,913	+		GFF3102	0.29	+0.0
3,170,921	-		GFF3102	0.30	-0.3
3,170,926	-		GFF3102	0.31	-0.9
3,170,927	+		GFF3102	0.31	-1.8
3,170,935	-		GFF3102	0.32	-0.3
3,170,942	+		GFF3102	0.32	+0.0
3,170,956	-		GFF3102	0.34	-0.3
3,170,971	-		GFF3102	0.36	+0.0
3,170,974	+		GFF3102	0.36	-1.7
3,170,989	+		GFF3102	0.38	-0.6
3,170,997	-		GFF3102	0.39	-1.5
3,171,015	+		GFF3102	0.41	-0.1
3,171,039	-		GFF3102	0.44	-0.1
3,171,039	-		GFF3102	0.44	+0.4
3,171,044	-		GFF3102	0.45	+0.7
3,171,049	+		GFF3102	0.46	-0.5
3,171,060	+		GFF3102	0.47	+1.3
3,171,060	+		GFF3102	0.47	+1.5
3,171,065	+		GFF3102	0.47	-1.1
3,171,065	+		GFF3102	0.47	+0.4
3,171,070	+		GFF3102	0.48	-0.6
3,171,073	-		GFF3102	0.48	+1.6
3,171,073	-		GFF3102	0.48	+0.1
3,171,075	+		GFF3102	0.49	-0.3
3,171,095	-		GFF3102	0.51	+0.2
3,171,114	-		GFF3102	0.53	+0.1
3,171,209	+		GFF3102	0.65	-0.4
3,171,209	+		GFF3102	0.65	-1.0
3,171,209	+		GFF3102	0.65	-0.8
3,171,209	+		GFF3102	0.65	+0.3
3,171,217	-		GFF3102	0.66	+0.4
3,171,217	-		GFF3102	0.66	+0.5
3,171,219	+		GFF3102	0.66	-0.3
3,171,234	-		GFF3102	0.68	-0.1
3,171,244	-		GFF3102	0.69	+0.1
3,171,250	+		GFF3102	0.70	+0.6
3,171,258	+		GFF3102	0.71	+0.0
3,171,281	+		GFF3102	0.74	+0.6
3,171,295	+		GFF3102	0.76	+0.0
3,171,295	+		GFF3102	0.76	+0.5
3,171,295	+		GFF3102	0.76	-0.7
3,171,296	-		GFF3102	0.76	-2.0
3,171,303	-		GFF3102	0.77	+0.4
3,171,317	+		GFF3102	0.78	-1.0
3,171,321	+		GFF3102	0.79	+1.2
3,171,329	-		GFF3102	0.80	-0.3
3,171,337	+		GFF3102	0.81	-0.5
3,171,338	-		GFF3102	0.81	-0.7
3,171,339	-		GFF3102	0.81	-2.0
3,171,343	-		GFF3102	0.81	-0.6
3,171,357	+		GFF3102	0.83	+1.0
3,171,358	+		GFF3102	0.83	+0.2
3,171,395	+		GFF3102	0.88	+1.4
3,171,417	+				+0.6
3,171,417	+				+1.0
3,171,418	-				+0.1
3,171,422	+				-0.7
3,171,425	-				+0.0
3,171,427	-				+0.0
3,171,437	+				-1.3
3,171,437	+				-1.6
3,171,455	+				-0.6
3,171,482	-				-1.6
3,171,489	+				+1.0
3,171,495	+				+0.2
3,171,495	+				-0.5
3,171,495	+				+0.3
3,171,495	+				-0.6
3,171,495	+				+1.1
3,171,495	+				-0.9
3,171,495	+				+0.3
3,171,495	+				-0.6
3,171,503	-				+0.1
3,171,503	-				-1.3
3,171,503	-				+0.1
3,171,503	-				-0.1
3,171,503	-				-0.1
3,171,503	-				-1.1
3,171,503	-				-1.7
3,171,503	-				-0.3
3,171,503	-				-0.8
3,171,503	-				-2.1
3,171,503	-				+1.2
3,171,503	-				-0.4
3,171,503	-				-0.2
3,171,503	-				-0.7
3,171,503	-				-1.3
3,171,503	-				+1.1
3,171,539	-				+0.8
3,171,556	-				-2.2
3,171,575	-				-1.0
3,171,585	+				+1.1
3,171,592	+				+1.0
3,171,600	-				-1.8
3,171,635	+				+1.1
3,171,658	+				-0.2
3,171,678	+		GFF3103	0.10	-1.5
3,171,686	-		GFF3103	0.11	-1.0
3,171,707	+		GFF3103	0.12	-0.4
3,171,720	+		GFF3103	0.13	-0.2
3,171,720	-		GFF3103	0.13	-0.8
3,171,728	-		GFF3103	0.14	+1.2
3,171,748	+		GFF3103	0.15	-1.7
3,171,748	+		GFF3103	0.15	+0.1
3,171,757	+		GFF3103	0.16	-1.7
3,171,778	+		GFF3103	0.17	-0.1
3,171,799	+		GFF3103	0.19	+0.2
3,171,802	-		GFF3103	0.19	-0.1
3,171,804	+		GFF3103	0.19	+0.5
3,171,807	-		GFF3103	0.19	-0.2
3,171,810	+		GFF3103	0.19	-0.6
3,171,812	-		GFF3103	0.20	-1.4
3,171,812	-		GFF3103	0.20	+0.7
3,171,818	-		GFF3103	0.20	-1.1
3,171,818	-		GFF3103	0.20	-0.4
3,171,818	-		GFF3103	0.20	+0.5
3,171,870	+		GFF3103	0.24	-1.2
3,171,878	-		GFF3103	0.24	+0.2
3,171,883	-		GFF3103	0.24	+0.5
3,171,923	+		GFF3103	0.27	-0.8
3,171,942	-		GFF3103	0.29	-0.5
3,171,949	+		GFF3103	0.29	-0.5
3,171,980	+		GFF3103	0.31	+0.2
3,171,985	-		GFF3103	0.31	-1.0
3,171,985	-		GFF3103	0.31	+0.4
3,171,990	+		GFF3103	0.32	-1.8
3,171,995	+		GFF3103	0.32	-0.3
3,171,995	+		GFF3103	0.32	+0.8
3,171,995	+		GFF3103	0.32	-0.6
3,172,000	+		GFF3103	0.33	+0.8
3,172,000	+		GFF3103	0.33	-2.4
3,172,000	+		GFF3103	0.33	-1.9
3,172,003	-		GFF3103	0.33	+2.2
3,172,003	-		GFF3103	0.33	+0.6
3,172,010	-		GFF3103	0.33	+0.3
3,172,010	-		GFF3103	0.33	+2.4
3,172,010	-		GFF3103	0.33	-2.6
3,172,011	-		GFF3103	0.33	+0.5
3,172,090	+		GFF3103	0.39	-2.1
3,172,097	+		GFF3103	0.39	-0.5
3,172,100	-		GFF3103	0.39	-1.4
3,172,112	+		GFF3103	0.40	-0.5
3,172,112	+		GFF3103	0.40	-0.9
3,172,181	+		GFF3103	0.45	+0.4
3,172,191	+		GFF3103	0.46	-0.9
3,172,199	-		GFF3103	0.46	-0.9
3,172,206	+		GFF3103	0.47	-1.5
3,172,212	-		GFF3103	0.47	+0.7
3,172,214	-		GFF3103	0.47	-1.2
3,172,241	+		GFF3103	0.49	-0.3
3,172,263	+		GFF3103	0.51	-1.4
3,172,270	+		GFF3103	0.51	-0.7
3,172,271	-		GFF3103	0.51	+0.2
3,172,271	-		GFF3103	0.51	+1.2
3,172,271	-		GFF3103	0.51	+0.8
3,172,273	+		GFF3103	0.51	+0.6
3,172,273	+		GFF3103	0.51	+0.1
3,172,299	-		GFF3103	0.53	-1.5
3,172,299	-		GFF3103	0.53	+1.3
3,172,310	-		GFF3103	0.54	-0.1
3,172,319	-		GFF3103	0.54	+0.2
3,172,357	-		GFF3103	0.57	+0.1
3,172,373	+		GFF3103	0.58	-0.8
3,172,377	-		GFF3103	0.58	-1.0
3,172,383	+		GFF3103	0.59	+0.2
3,172,391	-		GFF3103	0.59	-0.4
3,172,392	+		GFF3103	0.59	-0.1
3,172,392	+		GFF3103	0.59	-1.7
3,172,422	+		GFF3103	0.61	+0.7
3,172,458	+		GFF3103	0.64	-1.7
3,172,469	+		GFF3103	0.65	-0.2
3,172,494	+		GFF3103	0.66	-1.0
3,172,502	+		GFF3103	0.67	-2.1
3,172,502	+		GFF3103	0.67	+0.2
3,172,510	-		GFF3103	0.67	-0.7
3,172,523	-		GFF3103	0.68	-1.3
3,172,540	+		GFF3103	0.70	+1.3
3,172,545	+		GFF3103	0.70	-0.9
3,172,559	+		GFF3103	0.71	+0.8
3,172,559	-		GFF3103	0.71	-2.3
3,172,567	-		GFF3103	0.71	-0.4
3,172,567	-		GFF3103	0.71	-0.6
3,172,568	-		GFF3103	0.71	+0.5
3,172,575	-		GFF3103	0.72	+0.2
3,172,616	-		GFF3103	0.75	+0.3
3,172,623	-		GFF3103	0.75	-1.1
3,172,630	+		GFF3103	0.76	-0.1
3,172,630	+		GFF3103	0.76	-0.6
3,172,630	+		GFF3103	0.76	+0.2
3,172,630	+		GFF3103	0.76	+0.9
3,172,630	+		GFF3103	0.76	-1.3
3,172,630	+		GFF3103	0.76	-1.1
3,172,636	+		GFF3103	0.76	-0.3
3,172,638	-		GFF3103	0.76	-2.1
3,172,638	-		GFF3103	0.76	-0.3
3,172,638	-		GFF3103	0.76	-0.9
3,172,638	-		GFF3103	0.76	-0.6
3,172,638	-		GFF3103	0.76	-1.5
3,172,645	-		GFF3103	0.77	+0.6
3,172,674	+		GFF3103	0.79	+0.8
3,172,679	+		GFF3103	0.79	-0.5
3,172,687	-		GFF3103	0.80	+0.7
3,172,689	+		GFF3103	0.80	-0.7
3,172,712	-		GFF3103	0.81	-0.7
3,172,726	+		GFF3103	0.82	-1.1
3,172,734	-		GFF3103	0.83	+1.3
3,172,736	+		GFF3103	0.83	-0.9
3,172,744	-		GFF3103	0.84	-0.1
3,172,746	+		GFF3103	0.84	-0.1
3,172,770	+		GFF3103	0.85	-0.2
3,172,785	+		GFF3103	0.86	-0.7
3,172,785	+		GFF3103	0.86	-1.8
3,172,811	-		GFF3103	0.88	-0.4
3,172,816	-		GFF3103	0.88	+0.4
3,172,830	+		GFF3103	0.89	-2.5
3,172,833	-		GFF3103	0.90	-0.9
3,172,833	-		GFF3103	0.90	+1.0
3,172,833	-		GFF3103	0.90	-1.3
3,172,846	+				-0.2
3,172,854	-				-1.9
3,172,872	+				-0.7
3,172,880	-				-0.6
3,172,929	+				-0.4
3,172,952	-				+0.1
3,172,966	-				-1.3
3,172,974	+				-1.9
3,172,980	-				-0.3
3,172,982	-				-0.5
3,172,987	-				-0.1
3,173,023	-				-0.3
3,173,056	-				-1.4
3,173,097	-				-1.1
3,173,108	-				+0.9
3,173,162	-				-0.9
3,173,185	-				-2.1
3,173,185	-				-0.0
3,173,194	+				+1.1
3,173,194	+				-2.3
3,173,201	-				-0.2
3,173,202	-				+0.0
3,173,202	-				-0.1
3,173,206	+				-2.1
3,173,208	-				-1.0
3,173,209	-				+1.6
3,173,215	+				+0.2
3,173,215	+				+0.5
3,173,231	-				-0.5
3,173,231	-				-0.8
3,173,233	-				+0.3
3,173,244	-				+1.2
3,173,246	+				-0.7
3,173,255	-				-1.8
3,173,265	-				-1.3
3,173,265	-				-1.8
3,173,324	-				-2.1
3,173,397	-		GFF3104	0.12	-1.2
3,173,402	-		GFF3104	0.12	-0.4
3,173,416	+		GFF3104	0.12	-0.7
3,173,418	+		GFF3104	0.12	-0.0
3,173,426	-		GFF3104	0.12	+0.2
3,173,434	+		GFF3104	0.13	-0.1
3,173,445	+		GFF3104	0.13	-0.1
3,173,445	+		GFF3104	0.13	+0.3
3,173,455	+		GFF3104	0.13	+0.3
3,173,458	-		GFF3104	0.13	-0.4
3,173,460	-		GFF3104	0.13	-0.2
3,173,460	-		GFF3104	0.13	+1.4
3,173,468	-		GFF3104	0.14	+0.0
3,173,483	+		GFF3104	0.14	+0.4
3,173,483	+		GFF3104	0.14	+0.1
3,173,506	-		GFF3104	0.15	-1.3
3,173,524	+		GFF3104	0.15	-2.2
3,173,524	+		GFF3104	0.15	+0.4
3,173,583	+		GFF3104	0.17	-0.5
3,173,583	-		GFF3104	0.17	-1.9
3,173,583	-		GFF3104	0.17	-0.7
3,173,588	+		GFF3104	0.17	-0.6
3,173,594	+		GFF3104	0.17	+1.0
3,173,600	+		GFF3104	0.17	-1.1
3,173,600	+		GFF3104	0.17	+0.0
3,173,636	+		GFF3104	0.18	+0.4
3,173,636	+		GFF3104	0.18	+0.3
3,173,636	+		GFF3104	0.18	+0.2
3,173,636	+		GFF3104	0.18	-0.6
3,173,639	-		GFF3104	0.18	-0.1
3,173,639	-		GFF3104	0.18	+0.7
3,173,644	-		GFF3104	0.19	-2.2
3,173,644	-		GFF3104	0.19	-1.2
3,173,644	-		GFF3104	0.19	+0.3
3,173,692	+		GFF3104	0.20	-0.1
3,173,696	+		GFF3104	0.20	+0.1
3,173,700	-		GFF3104	0.20	+1.3
3,173,700	-		GFF3104	0.20	+0.5
3,173,700	-		GFF3104	0.20	-1.5
3,173,700	-		GFF3104	0.20	-0.3
3,173,704	-		GFF3104	0.20	+0.3
3,173,704	-		GFF3104	0.20	+0.0
3,173,718	+		GFF3104	0.21	-0.9
3,173,743	+		GFF3104	0.21	+0.1
3,173,743	+		GFF3104	0.21	+0.3
3,173,746	-		GFF3104	0.21	+0.8
3,173,751	-		GFF3104	0.22	-0.1
3,173,751	-		GFF3104	0.22	+0.4
3,173,751	-		GFF3104	0.22	+0.1
3,173,767	-		GFF3104	0.22	-0.9
3,173,869	-		GFF3104	0.25	+0.3
3,173,885	-		GFF3104	0.25	+0.7
3,173,886	+		GFF3104	0.25	-0.5
3,173,889	-		GFF3104	0.25	-0.3
3,173,894	-		GFF3104	0.26	+0.4
3,173,894	-		GFF3104	0.26	-0.5
3,173,904	-		GFF3104	0.26	+0.2
3,173,908	+		GFF3104	0.26	-0.1
3,173,908	+		GFF3104	0.26	-0.8
3,173,915	-		GFF3104	0.26	-0.3
3,173,916	-		GFF3104	0.26	+0.8
3,173,916	-		GFF3104	0.26	-1.1
3,173,916	-		GFF3104	0.26	+1.2
3,173,923	-		GFF3104	0.26	+0.9
3,173,933	-		GFF3104	0.27	-0.8
3,173,942	+		GFF3104	0.27	+0.7
3,173,942	+		GFF3104	0.27	-2.0
3,173,950	-		GFF3104	0.27	+1.4
3,173,950	-		GFF3104	0.27	-0.2
3,173,976	-		GFF3104	0.28	+0.5
3,173,982	+		GFF3104	0.28	+0.7