Strain Fitness in Sphingobium sp. HT1-2 around GFF3102

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,169,679	+				-0.3
3,169,705	-				-0.1
3,169,715	-				+1.0
3,169,738	+				-0.9
3,169,743	+				-2.1
3,169,743	+				-1.7
3,169,751	-				+1.0
3,169,751	-				+0.4
3,169,751	-				-0.6
3,169,751	-				-0.1
3,169,751	-				-0.3
3,169,751	-				+1.3
3,169,751	-				-0.3
3,169,751	-				-1.4
3,169,753	+				+0.1
3,169,761	-				-1.0
3,169,781	-				-1.0
3,169,783	-				+0.6
3,169,785	+				-0.2
3,169,795	+				-0.7
3,169,795	+				-1.9
3,169,812	+				-0.8
3,169,812	+				-0.4
3,169,812	+				-1.1
3,169,819	+				-0.3
3,169,820	-				-0.6
3,169,822	+				-1.8
3,169,830	+				+0.4
3,169,830	+				-0.6
3,169,830	+				-0.8
3,169,830	+				-1.0
3,169,830	+				-0.2
3,169,830	+				-0.3
3,169,830	+				+0.3
3,169,830	+				-0.6
3,169,832	-				+0.4
3,169,832	-				-1.4
3,169,838	-				-0.5
3,169,838	-				-2.4
3,169,838	-				-0.9
3,169,838	-				-0.4
3,169,838	-				-1.3
3,169,838	-				-0.9
3,169,854	-				+0.1
3,169,854	-				-0.9
3,169,854	-				-0.1
3,169,854	-				-0.7
3,169,854	-				+0.0
3,169,856	-				+0.3
3,169,869	+				+0.7
3,169,869	+				+0.7
3,169,877	-				-0.2
3,169,882	+				+0.0
3,169,887	+				+0.7
3,169,895	-				-0.2
3,169,895	-				+0.7
3,169,895	-				+0.7
3,169,906	-				-0.4
3,169,906	-				+0.2
3,169,920	-		GFF3101	0.12	-0.6
3,169,920	-		GFF3101	0.12	-0.5
3,169,958	+		GFF3101	0.17	+0.1
3,169,965	+		GFF3101	0.18	+0.6
3,169,978	+		GFF3101	0.19	+1.5
3,169,978	+		GFF3101	0.19	-1.0
3,169,978	+		GFF3101	0.19	-1.2
3,169,978	+		GFF3101	0.19	-0.4
3,169,978	+		GFF3101	0.19	-0.8
3,169,986	-		GFF3101	0.20	-0.5
3,169,986	-		GFF3101	0.20	+0.1
3,169,988	+		GFF3101	0.21	-0.9
3,169,992	+		GFF3101	0.21	+0.9
3,169,996	-		GFF3101	0.22	+0.5
3,169,996	-		GFF3101	0.22	-1.5
3,170,000	-		GFF3101	0.22	+0.4
3,170,052	-		GFF3101	0.29	+0.0
3,170,052	-		GFF3101	0.29	-1.3
3,170,062	+		GFF3101	0.30	+0.6
3,170,069	+		GFF3101	0.31	+0.3
3,170,077	-		GFF3101	0.32	-0.4
3,170,077	-		GFF3101	0.32	-0.4
3,170,090	+		GFF3101	0.34	+0.7
3,170,156	+		GFF3101	0.43	-0.4
3,170,191	+		GFF3101	0.48	+0.3
3,170,207	-		GFF3101	0.50	-0.0
3,170,220	+		GFF3101	0.51	-0.1
3,170,220	+		GFF3101	0.51	+0.5
3,170,235	+		GFF3101	0.53	-0.6
3,170,244	+		GFF3101	0.55	-3.0
3,170,244	+		GFF3101	0.55	+0.4
3,170,247	-		GFF3101	0.55	-2.1
3,170,247	-		GFF3101	0.55	+0.6
3,170,252	-		GFF3101	0.56	+1.1
3,170,252	-		GFF3101	0.56	-1.7
3,170,258	+		GFF3101	0.56	-1.4
3,170,274	-		GFF3101	0.59	-0.9
3,170,279	-		GFF3101	0.59	-0.4
3,170,284	-		GFF3101	0.60	+0.1
3,170,295	+		GFF3101	0.61	-1.1
3,170,385	+		GFF3101	0.73	-1.7
3,170,385	+		GFF3101	0.73	-0.5
3,170,393	-		GFF3101	0.74	-1.4
3,170,393	-		GFF3101	0.74	+0.4
3,170,393	-		GFF3101	0.74	-0.3
3,170,403	+		GFF3101	0.76	-0.1
3,170,406	+		GFF3101	0.76	+0.1
3,170,406	-		GFF3101	0.76	-0.3
3,170,413	+		GFF3101	0.77	-2.1
3,170,441	+		GFF3101	0.81	+0.1
3,170,449	-		GFF3101	0.82	-0.1
3,170,449	-		GFF3101	0.82	+0.8
3,170,451	+		GFF3101	0.82	-2.0
3,170,454	-		GFF3101	0.82	-0.5
3,170,459	-		GFF3101	0.83	-0.6
3,170,520	-				+1.0
3,170,554	-				+0.5
3,170,575	+				-1.2
3,170,575	+				-0.5
3,170,575	+				-2.6
3,170,592	+				+0.7
3,170,628	+				+0.2
3,170,628	+				-0.2
3,170,628	+				-0.6
3,170,687	+				-1.4
3,170,724	+				+0.2
3,170,724	+				-2.5
3,170,729	+				-0.8
3,170,729	+				-0.6
3,170,732	-				-0.1
3,170,732	-				-0.2
3,170,732	-				-1.3
3,170,749	+				-0.1
3,170,755	+				-0.1
3,170,763	-		GFF3102	0.11	+0.8
3,170,763	-		GFF3102	0.11	-0.2
3,170,782	-		GFF3102	0.13	-0.5
3,170,804	-		GFF3102	0.16	-0.4
3,170,827	+		GFF3102	0.18	+0.8
3,170,835	-		GFF3102	0.19	-0.1
3,170,837	+		GFF3102	0.20	-0.7
3,170,837	+		GFF3102	0.20	-1.7
3,170,837	+		GFF3102	0.20	-0.0
3,170,840	-		GFF3102	0.20	+0.4
3,170,845	-		GFF3102	0.21	-0.0
3,170,847	+		GFF3102	0.21	-0.8
3,170,872	+		GFF3102	0.24	-0.7
3,170,877	+		GFF3102	0.25	-0.1
3,170,877	+		GFF3102	0.25	+0.1
3,170,877	+		GFF3102	0.25	+1.4
3,170,877	+		GFF3102	0.25	+0.7
3,170,880	-		GFF3102	0.25	-0.7
3,170,885	-		GFF3102	0.26	-1.5
3,170,913	+		GFF3102	0.29	+0.5
3,170,913	+		GFF3102	0.29	-0.7
3,170,913	+		GFF3102	0.29	+0.0
3,170,921	-		GFF3102	0.30	-0.3
3,170,926	-		GFF3102	0.31	-0.9
3,170,927	+		GFF3102	0.31	-1.8
3,170,935	-		GFF3102	0.32	-0.3
3,170,942	+		GFF3102	0.32	+0.0
3,170,956	-		GFF3102	0.34	-0.3
3,170,971	-		GFF3102	0.36	+0.0
3,170,974	+		GFF3102	0.36	-1.7
3,170,989	+		GFF3102	0.38	-0.6
3,170,997	-		GFF3102	0.39	-1.5
3,171,015	+		GFF3102	0.41	-0.1
3,171,039	-		GFF3102	0.44	-0.1
3,171,039	-		GFF3102	0.44	+0.4
3,171,044	-		GFF3102	0.45	+0.7
3,171,049	+		GFF3102	0.46	-0.5
3,171,060	+		GFF3102	0.47	+1.3
3,171,060	+		GFF3102	0.47	+1.5
3,171,065	+		GFF3102	0.47	-1.1
3,171,065	+		GFF3102	0.47	+0.4
3,171,070	+		GFF3102	0.48	-0.6
3,171,073	-		GFF3102	0.48	+1.6
3,171,073	-		GFF3102	0.48	+0.1
3,171,075	+		GFF3102	0.49	-0.3
3,171,095	-		GFF3102	0.51	+0.2
3,171,114	-		GFF3102	0.53	+0.1
3,171,209	+		GFF3102	0.65	-0.4
3,171,209	+		GFF3102	0.65	-1.0
3,171,209	+		GFF3102	0.65	-0.8
3,171,209	+		GFF3102	0.65	+0.3
3,171,217	-		GFF3102	0.66	+0.4
3,171,217	-		GFF3102	0.66	+0.5
3,171,219	+		GFF3102	0.66	-0.3
3,171,234	-		GFF3102	0.68	-0.1
3,171,244	-		GFF3102	0.69	+0.1
3,171,250	+		GFF3102	0.70	+0.6
3,171,258	+		GFF3102	0.71	+0.0
3,171,281	+		GFF3102	0.74	+0.6
3,171,295	+		GFF3102	0.76	+0.0
3,171,295	+		GFF3102	0.76	+0.5
3,171,295	+		GFF3102	0.76	-0.7
3,171,296	-		GFF3102	0.76	-2.0
3,171,303	-		GFF3102	0.77	+0.4
3,171,317	+		GFF3102	0.78	-1.0
3,171,321	+		GFF3102	0.79	+1.2
3,171,329	-		GFF3102	0.80	-0.3
3,171,337	+		GFF3102	0.81	-0.5
3,171,338	-		GFF3102	0.81	-0.7
3,171,339	-		GFF3102	0.81	-2.0
3,171,343	-		GFF3102	0.81	-0.6
3,171,357	+		GFF3102	0.83	+1.0
3,171,358	+		GFF3102	0.83	+0.2
3,171,395	+		GFF3102	0.88	+1.4
3,171,417	+				+0.6
3,171,417	+				+1.0
3,171,418	-				+0.1
3,171,422	+				-0.7
3,171,425	-				+0.0
3,171,427	-				+0.0
3,171,437	+				-1.3
3,171,437	+				-1.6
3,171,455	+				-0.6
3,171,482	-				-1.6
3,171,489	+				+1.0
3,171,495	+				+0.2
3,171,495	+				-0.5
3,171,495	+				+0.3
3,171,495	+				-0.6
3,171,495	+				+1.1
3,171,495	+				-0.9
3,171,495	+				+0.3
3,171,495	+				-0.6
3,171,503	-				+0.1
3,171,503	-				-1.3
3,171,503	-				+0.1
3,171,503	-				-0.1
3,171,503	-				-0.1
3,171,503	-				-1.1
3,171,503	-				-1.7
3,171,503	-				-0.3
3,171,503	-				-0.8
3,171,503	-				-2.1
3,171,503	-				+1.2
3,171,503	-				-0.4
3,171,503	-				-0.2
3,171,503	-				-0.7
3,171,503	-				-1.3
3,171,503	-				+1.1
3,171,539	-				+0.8
3,171,556	-				-2.2
3,171,575	-				-1.0
3,171,585	+				+1.1
3,171,592	+				+1.0
3,171,600	-				-1.8
3,171,635	+				+1.1
3,171,658	+				-0.2
3,171,678	+		GFF3103	0.10	-1.5
3,171,686	-		GFF3103	0.11	-1.0
3,171,707	+		GFF3103	0.12	-0.4
3,171,720	+		GFF3103	0.13	-0.2
3,171,720	-		GFF3103	0.13	-0.8
3,171,728	-		GFF3103	0.14	+1.2
3,171,748	+		GFF3103	0.15	-1.7
3,171,748	+		GFF3103	0.15	+0.1
3,171,757	+		GFF3103	0.16	-1.7
3,171,778	+		GFF3103	0.17	-0.1
3,171,799	+		GFF3103	0.19	+0.2
3,171,802	-		GFF3103	0.19	-0.1
3,171,804	+		GFF3103	0.19	+0.5
3,171,807	-		GFF3103	0.19	-0.2
3,171,810	+		GFF3103	0.19	-0.6
3,171,812	-		GFF3103	0.20	-1.4
3,171,812	-		GFF3103	0.20	+0.7
3,171,818	-		GFF3103	0.20	-1.1
3,171,818	-		GFF3103	0.20	-0.4
3,171,818	-		GFF3103	0.20	+0.5
3,171,870	+		GFF3103	0.24	-1.2
3,171,878	-		GFF3103	0.24	+0.2
3,171,883	-		GFF3103	0.24	+0.5
3,171,923	+		GFF3103	0.27	-0.8
3,171,942	-		GFF3103	0.29	-0.5
3,171,949	+		GFF3103	0.29	-0.5
3,171,980	+		GFF3103	0.31	+0.2
3,171,985	-		GFF3103	0.31	-1.0
3,171,985	-		GFF3103	0.31	+0.4
3,171,990	+		GFF3103	0.32	-1.8
3,171,995	+		GFF3103	0.32	-0.3
3,171,995	+		GFF3103	0.32	+0.8
3,171,995	+		GFF3103	0.32	-0.6
3,172,000	+		GFF3103	0.33	+0.8
3,172,000	+		GFF3103	0.33	-2.4
3,172,000	+		GFF3103	0.33	-1.9
3,172,003	-		GFF3103	0.33	+2.2
3,172,003	-		GFF3103	0.33	+0.6
3,172,010	-		GFF3103	0.33	+0.3
3,172,010	-		GFF3103	0.33	+2.4
3,172,010	-		GFF3103	0.33	-2.6
3,172,011	-		GFF3103	0.33	+0.5
3,172,090	+		GFF3103	0.39	-2.1
3,172,097	+		GFF3103	0.39	-0.5
3,172,100	-		GFF3103	0.39	-1.4
3,172,112	+		GFF3103	0.40	-0.5
3,172,112	+		GFF3103	0.40	-0.9
3,172,181	+		GFF3103	0.45	+0.4
3,172,191	+		GFF3103	0.46	-0.9
3,172,199	-		GFF3103	0.46	-0.9
3,172,206	+		GFF3103	0.47	-1.5
3,172,212	-		GFF3103	0.47	+0.7
3,172,214	-		GFF3103	0.47	-1.2
3,172,241	+		GFF3103	0.49	-0.3
3,172,263	+		GFF3103	0.51	-1.4
3,172,270	+		GFF3103	0.51	-0.7
3,172,271	-		GFF3103	0.51	+0.2
3,172,271	-		GFF3103	0.51	+1.2
3,172,271	-		GFF3103	0.51	+0.8
3,172,273	+		GFF3103	0.51	+0.6
3,172,273	+		GFF3103	0.51	+0.1
3,172,299	-		GFF3103	0.53	-1.5
3,172,299	-		GFF3103	0.53	+1.3
3,172,310	-		GFF3103	0.54	-0.1
3,172,319	-		GFF3103	0.54	+0.2
3,172,357	-		GFF3103	0.57	+0.1
3,172,373	+		GFF3103	0.58	-0.8
3,172,377	-		GFF3103	0.58	-1.0
3,172,383	+		GFF3103	0.59	+0.2
3,172,391	-		GFF3103	0.59	-0.4
3,172,392	+		GFF3103	0.59	-0.1
3,172,392	+		GFF3103	0.59	-1.7
3,172,422	+		GFF3103	0.61	+0.7
3,172,458	+		GFF3103	0.64	-1.7
3,172,469	+		GFF3103	0.65	-0.2
3,172,494	+		GFF3103	0.66	-1.0