Strain Fitness in Sphingobium sp. HT1-2 around GFF3101

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,168,837	-		GFF3100	0.41	-1.5
3,168,889	-		GFF3100	0.44	-1.1
3,168,889	-		GFF3100	0.44	-0.6
3,168,911	-		GFF3100	0.46	-2.5
3,168,937	-		GFF3100	0.47	-2.3
3,168,956	-		GFF3100	0.48	-0.6
3,168,975	+		GFF3100	0.50	-0.5
3,168,983	-		GFF3100	0.50	+0.2
3,169,003	+		GFF3100	0.51	-2.3
3,169,012	+		GFF3100	0.52	-1.1
3,169,019	+		GFF3100	0.52	+0.3
3,169,025	-		GFF3100	0.53	+0.2
3,169,025	-		GFF3100	0.53	+0.5
3,169,047	-		GFF3100	0.54	+1.1
3,169,068	-		GFF3100	0.55	+1.1
3,169,073	-		GFF3100	0.56	+0.3
3,169,119	+		GFF3100	0.58	-1.2
3,169,119	+		GFF3100	0.58	-2.4
3,169,122	-		GFF3100	0.59	+0.3
3,169,124	+		GFF3100	0.59	-0.6
3,169,124	+		GFF3100	0.59	+0.2
3,169,124	+		GFF3100	0.59	+0.3
3,169,129	+		GFF3100	0.59	-0.2
3,169,132	-		GFF3100	0.59	-0.7
3,169,132	-		GFF3100	0.59	-1.9
3,169,136	+		GFF3100	0.59	+0.1
3,169,152	+		GFF3100	0.60	-0.3
3,169,162	-		GFF3100	0.61	-0.3
3,169,173	-		GFF3100	0.62	-1.3
3,169,173	-		GFF3100	0.62	-0.9
3,169,199	-		GFF3100	0.63	-2.1
3,169,219	-		GFF3100	0.64	+0.9
3,169,250	-		GFF3100	0.66	-0.6
3,169,255	-		GFF3100	0.67	-1.5
3,169,257	+		GFF3100	0.67	-1.6
3,169,259	-		GFF3100	0.67	-0.6
3,169,265	-		GFF3100	0.67	+0.6
3,169,265	-		GFF3100	0.67	-0.8
3,169,265	-		GFF3100	0.67	+0.2
3,169,312	-		GFF3100	0.70	+1.3
3,169,320	+		GFF3100	0.71	-2.6
3,169,320	+		GFF3100	0.71	-0.1
3,169,344	+		GFF3100	0.72	-0.9
3,169,344	+		GFF3100	0.72	+0.7
3,169,349	+		GFF3100	0.72	-0.8
3,169,352	-		GFF3100	0.73	+0.7
3,169,352	-		GFF3100	0.73	-1.3
3,169,355	+		GFF3100	0.73	+0.0
3,169,367	+		GFF3100	0.74	-0.7
3,169,375	-		GFF3100	0.74	-2.3
3,169,391	-		GFF3100	0.75	-1.1
3,169,391	-		GFF3100	0.75	+0.2
3,169,393	-		GFF3100	0.75	+1.3
3,169,429	+		GFF3100	0.77	-0.5
3,169,430	+		GFF3100	0.77	-0.0
3,169,437	+		GFF3100	0.78	-1.6
3,169,438	-		GFF3100	0.78	-0.5
3,169,438	-		GFF3100	0.78	-1.5
3,169,440	+		GFF3100	0.78	-0.2
3,169,440	+		GFF3100	0.78	+0.6
3,169,448	-		GFF3100	0.78	+0.2
3,169,455	-		GFF3100	0.79	-1.6
3,169,467	+		GFF3100	0.80	-0.1
3,169,472	-		GFF3100	0.80	-0.9
3,169,499	-		GFF3100	0.82	-0.0
3,169,504	-		GFF3100	0.82	+0.1
3,169,506	-		GFF3100	0.82	-0.7
3,169,559	+		GFF3100	0.85	-0.8
3,169,569	-		GFF3100	0.86	-1.8
3,169,572	-		GFF3100	0.86	-0.0
3,169,642	-				+0.0
3,169,642	-				+0.4
3,169,657	-				-0.9
3,169,679	+				-0.3
3,169,705	-				-0.1
3,169,715	-				+1.0
3,169,738	+				-0.9
3,169,743	+				-2.1
3,169,743	+				-1.7
3,169,751	-				+1.0
3,169,751	-				+0.4
3,169,751	-				-0.6
3,169,751	-				-0.1
3,169,751	-				-0.3
3,169,751	-				+1.3
3,169,751	-				-0.3
3,169,751	-				-1.4
3,169,753	+				+0.1
3,169,761	-				-1.0
3,169,781	-				-1.0
3,169,783	-				+0.6
3,169,785	+				-0.2
3,169,795	+				-0.7
3,169,795	+				-1.9
3,169,812	+				-0.8
3,169,812	+				-0.4
3,169,812	+				-1.1
3,169,819	+				-0.3
3,169,820	-				-0.6
3,169,822	+				-1.8
3,169,830	+				+0.4
3,169,830	+				-0.6
3,169,830	+				-0.8
3,169,830	+				-1.0
3,169,830	+				-0.2
3,169,830	+				-0.3
3,169,830	+				+0.3
3,169,830	+				-0.6
3,169,832	-				+0.4
3,169,832	-				-1.4
3,169,838	-				-0.5
3,169,838	-				-2.4
3,169,838	-				-0.9
3,169,838	-				-0.4
3,169,838	-				-1.3
3,169,838	-				-0.9
3,169,854	-				+0.1
3,169,854	-				-0.9
3,169,854	-				-0.1
3,169,854	-				-0.7
3,169,854	-				+0.0
3,169,856	-				+0.3
3,169,869	+				+0.7
3,169,869	+				+0.7
3,169,877	-				-0.2
3,169,882	+				+0.0
3,169,887	+				+0.7
3,169,895	-				-0.2
3,169,895	-				+0.7
3,169,895	-				+0.7
3,169,906	-				-0.4
3,169,906	-				+0.2
3,169,920	-		GFF3101	0.12	-0.6
3,169,920	-		GFF3101	0.12	-0.5
3,169,958	+		GFF3101	0.17	+0.1
3,169,965	+		GFF3101	0.18	+0.6
3,169,978	+		GFF3101	0.19	+1.5
3,169,978	+		GFF3101	0.19	-1.0
3,169,978	+		GFF3101	0.19	-1.2
3,169,978	+		GFF3101	0.19	-0.4
3,169,978	+		GFF3101	0.19	-0.8
3,169,986	-		GFF3101	0.20	-0.5
3,169,986	-		GFF3101	0.20	+0.1
3,169,988	+		GFF3101	0.21	-0.9
3,169,992	+		GFF3101	0.21	+0.9
3,169,996	-		GFF3101	0.22	+0.5
3,169,996	-		GFF3101	0.22	-1.5
3,170,000	-		GFF3101	0.22	+0.4
3,170,052	-		GFF3101	0.29	+0.0
3,170,052	-		GFF3101	0.29	-1.3
3,170,062	+		GFF3101	0.30	+0.6
3,170,069	+		GFF3101	0.31	+0.3
3,170,077	-		GFF3101	0.32	-0.4
3,170,077	-		GFF3101	0.32	-0.4
3,170,090	+		GFF3101	0.34	+0.7
3,170,156	+		GFF3101	0.43	-0.4
3,170,191	+		GFF3101	0.48	+0.3
3,170,207	-		GFF3101	0.50	-0.0
3,170,220	+		GFF3101	0.51	-0.1
3,170,220	+		GFF3101	0.51	+0.5
3,170,235	+		GFF3101	0.53	-0.6
3,170,244	+		GFF3101	0.55	-3.0
3,170,244	+		GFF3101	0.55	+0.4
3,170,247	-		GFF3101	0.55	-2.1
3,170,247	-		GFF3101	0.55	+0.6
3,170,252	-		GFF3101	0.56	+1.1
3,170,252	-		GFF3101	0.56	-1.7
3,170,258	+		GFF3101	0.56	-1.4
3,170,274	-		GFF3101	0.59	-0.9
3,170,279	-		GFF3101	0.59	-0.4
3,170,284	-		GFF3101	0.60	+0.1
3,170,295	+		GFF3101	0.61	-1.1
3,170,385	+		GFF3101	0.73	-1.7
3,170,385	+		GFF3101	0.73	-0.5
3,170,393	-		GFF3101	0.74	-1.4
3,170,393	-		GFF3101	0.74	+0.4
3,170,393	-		GFF3101	0.74	-0.3
3,170,403	+		GFF3101	0.76	-0.1
3,170,406	+		GFF3101	0.76	+0.1
3,170,406	-		GFF3101	0.76	-0.3
3,170,413	+		GFF3101	0.77	-2.1
3,170,441	+		GFF3101	0.81	+0.1
3,170,449	-		GFF3101	0.82	-0.1
3,170,449	-		GFF3101	0.82	+0.8
3,170,451	+		GFF3101	0.82	-2.0
3,170,454	-		GFF3101	0.82	-0.5
3,170,459	-		GFF3101	0.83	-0.6
3,170,520	-				+1.0
3,170,554	-				+0.5
3,170,575	+				-1.2
3,170,575	+				-0.5
3,170,575	+				-2.6
3,170,592	+				+0.7
3,170,628	+				+0.2
3,170,628	+				-0.2
3,170,628	+				-0.6
3,170,687	+				-1.4
3,170,724	+				+0.2
3,170,724	+				-2.5
3,170,729	+				-0.8
3,170,729	+				-0.6
3,170,732	-				-0.1
3,170,732	-				-0.2
3,170,732	-				-1.3
3,170,749	+				-0.1
3,170,755	+				-0.1
3,170,763	-		GFF3102	0.11	+0.8
3,170,763	-		GFF3102	0.11	-0.2
3,170,782	-		GFF3102	0.13	-0.5
3,170,804	-		GFF3102	0.16	-0.4
3,170,827	+		GFF3102	0.18	+0.8
3,170,835	-		GFF3102	0.19	-0.1
3,170,837	+		GFF3102	0.20	-0.7
3,170,837	+		GFF3102	0.20	-1.7
3,170,837	+		GFF3102	0.20	-0.0
3,170,840	-		GFF3102	0.20	+0.4
3,170,845	-		GFF3102	0.21	-0.0
3,170,847	+		GFF3102	0.21	-0.8
3,170,872	+		GFF3102	0.24	-0.7
3,170,877	+		GFF3102	0.25	-0.1
3,170,877	+		GFF3102	0.25	+0.1
3,170,877	+		GFF3102	0.25	+1.4
3,170,877	+		GFF3102	0.25	+0.7
3,170,880	-		GFF3102	0.25	-0.7
3,170,885	-		GFF3102	0.26	-1.5
3,170,913	+		GFF3102	0.29	+0.5
3,170,913	+		GFF3102	0.29	-0.7
3,170,913	+		GFF3102	0.29	+0.0
3,170,921	-		GFF3102	0.30	-0.3
3,170,926	-		GFF3102	0.31	-0.9
3,170,927	+		GFF3102	0.31	-1.8
3,170,935	-		GFF3102	0.32	-0.3
3,170,942	+		GFF3102	0.32	+0.0
3,170,956	-		GFF3102	0.34	-0.3
3,170,971	-		GFF3102	0.36	+0.0
3,170,974	+		GFF3102	0.36	-1.7
3,170,989	+		GFF3102	0.38	-0.6
3,170,997	-		GFF3102	0.39	-1.5
3,171,015	+		GFF3102	0.41	-0.1
3,171,039	-		GFF3102	0.44	-0.1
3,171,039	-		GFF3102	0.44	+0.4
3,171,044	-		GFF3102	0.45	+0.7
3,171,049	+		GFF3102	0.46	-0.5
3,171,060	+		GFF3102	0.47	+1.3
3,171,060	+		GFF3102	0.47	+1.5
3,171,065	+		GFF3102	0.47	-1.1
3,171,065	+		GFF3102	0.47	+0.4
3,171,070	+		GFF3102	0.48	-0.6
3,171,073	-		GFF3102	0.48	+1.6
3,171,073	-		GFF3102	0.48	+0.1
3,171,075	+		GFF3102	0.49	-0.3
3,171,095	-		GFF3102	0.51	+0.2
3,171,114	-		GFF3102	0.53	+0.1
3,171,209	+		GFF3102	0.65	-0.4
3,171,209	+		GFF3102	0.65	-1.0
3,171,209	+		GFF3102	0.65	-0.8
3,171,209	+		GFF3102	0.65	+0.3
3,171,217	-		GFF3102	0.66	+0.4
3,171,217	-		GFF3102	0.66	+0.5
3,171,219	+		GFF3102	0.66	-0.3
3,171,234	-		GFF3102	0.68	-0.1
3,171,244	-		GFF3102	0.69	+0.1
3,171,250	+		GFF3102	0.70	+0.6
3,171,258	+		GFF3102	0.71	+0.0
3,171,281	+		GFF3102	0.74	+0.6
3,171,295	+		GFF3102	0.76	+0.0
3,171,295	+		GFF3102	0.76	+0.5
3,171,295	+		GFF3102	0.76	-0.7
3,171,296	-		GFF3102	0.76	-2.0
3,171,303	-		GFF3102	0.77	+0.4
3,171,317	+		GFF3102	0.78	-1.0
3,171,321	+		GFF3102	0.79	+1.2
3,171,329	-		GFF3102	0.80	-0.3
3,171,337	+		GFF3102	0.81	-0.5
3,171,338	-		GFF3102	0.81	-0.7
3,171,339	-		GFF3102	0.81	-2.0
3,171,343	-		GFF3102	0.81	-0.6
3,171,357	+		GFF3102	0.83	+1.0
3,171,358	+		GFF3102	0.83	+0.2
3,171,395	+		GFF3102	0.88	+1.4
3,171,417	+				+0.6
3,171,417	+				+1.0
3,171,418	-				+0.1
3,171,422	+				-0.7
3,171,425	-				+0.0
3,171,427	-				+0.0
3,171,437	+				-1.3
3,171,437	+				-1.6
3,171,455	+				-0.6
3,171,482	-				-1.6
3,171,489	+				+1.0
3,171,495	+				+0.2
3,171,495	+				-0.5
3,171,495	+				+0.3
3,171,495	+				-0.6
3,171,495	+				+1.1
3,171,495	+				-0.9
3,171,495	+				+0.3
3,171,495	+				-0.6
3,171,503	-				+0.1
3,171,503	-				-1.3
3,171,503	-				+0.1
3,171,503	-				-0.1
3,171,503	-				-0.1
3,171,503	-				-1.1
3,171,503	-				-1.7
3,171,503	-				-0.3
3,171,503	-				-0.8
3,171,503	-				-2.1
3,171,503	-				+1.2
3,171,503	-				-0.4
3,171,503	-				-0.2
3,171,503	-				-0.7
3,171,503	-				-1.3
3,171,503	-				+1.1
3,171,539	-				+0.8
3,171,556	-				-2.2
3,171,575	-				-1.0
3,171,585	+				+1.1