Strain Fitness in Sphingobium sp. HT1-2 around GFF3099

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,166,308	-				-1.5
3,166,308	-				-0.5
3,166,310	-				-1.6
3,166,310	-				-0.8
3,166,310	-				+0.2
3,166,310	-				-0.2
3,166,371	-				+0.4
3,166,382	+				+0.3
3,166,406	+				-1.7
3,166,406	+				+0.7
3,166,414	-				-0.7
3,166,414	-				-0.5
3,166,414	-				-0.7
3,166,419	+				-0.5
3,166,421	+				-0.6
3,166,421	+				-1.0
3,166,421	+				+0.2
3,166,429	-				-1.4
3,166,429	-				-0.4
3,166,448	-				+0.8
3,166,481	+				+0.3
3,166,489	-				-0.6
3,166,494	-				-0.4
3,166,496	+				-0.8
3,166,504	-				-0.1
3,166,513	+				-0.1
3,166,540	-				-0.2
3,166,551	-				+0.4
3,166,553	-				-0.6
3,166,573	+				-0.4
3,166,575	+				+0.2
3,166,612	+		GFF3098	0.10	+0.2
3,166,612	+		GFF3098	0.10	+0.0
3,166,612	+		GFF3098	0.10	-1.1
3,166,612	+		GFF3098	0.10	+0.8
3,166,622	-		GFF3098	0.12	-0.6
3,166,648	+		GFF3098	0.15	+0.2
3,166,715	+		GFF3098	0.25	-1.3
3,166,730	-		GFF3098	0.27	+1.4
3,166,736	-		GFF3098	0.28	-1.9
3,166,748	+		GFF3098	0.30	-0.4
3,166,748	+		GFF3098	0.30	-0.3
3,166,758	-		GFF3098	0.31	-0.8
3,166,784	+		GFF3098	0.35	-2.6
3,166,784	+		GFF3098	0.35	-1.1
3,166,784	+		GFF3098	0.35	-0.7
3,166,784	+		GFF3098	0.35	+0.1
3,166,792	-		GFF3098	0.36	+0.3
3,166,795	+		GFF3098	0.36	-0.1
3,166,860	+		GFF3098	0.46	+0.7
3,166,920	-		GFF3098	0.54	-1.8
3,166,939	+		GFF3098	0.57	-0.3
3,166,951	+		GFF3098	0.59	+0.6
3,166,952	+		GFF3098	0.59	+0.9
3,166,960	-		GFF3098	0.60	-0.8
3,166,970	+		GFF3098	0.62	-1.4
3,166,970	+		GFF3098	0.62	+0.7
3,166,973	-		GFF3098	0.62	+1.6
3,166,975	+		GFF3098	0.62	-0.1
3,166,975	+		GFF3098	0.62	+0.6
3,166,978	-		GFF3098	0.63	-0.8
3,166,983	-		GFF3098	0.64	+1.2
3,166,983	-		GFF3098	0.64	+0.9
3,167,018	+		GFF3098	0.69	-0.4
3,167,021	-		GFF3098	0.69	-2.5
3,167,021	-		GFF3098	0.69	-1.1
3,167,021	-		GFF3098	0.69	-1.3
3,167,026	-		GFF3098	0.70	-0.3
3,167,027	+		GFF3098	0.70	-3.0
3,167,038	+		GFF3098	0.71	+0.2
3,167,048	+		GFF3098	0.73	-0.5
3,167,088	-		GFF3098	0.79	-0.8
3,167,106	+		GFF3098	0.81	+1.1
3,167,114	-		GFF3098	0.82	-1.1
3,167,114	-		GFF3098	0.82	-1.1
3,167,134	+		GFF3098	0.85	-0.5
3,167,142	-		GFF3098	0.86	+0.2
3,167,142	-		GFF3098	0.86	-0.7
3,167,207	+				-0.6
3,167,254	-				-0.8
3,167,264	+				+0.9
3,167,294	-				-0.3
3,167,305	-				+0.2
3,167,316	+				+0.7
3,167,321	+				-0.0
3,167,328	+				+1.1
3,167,354	+				+0.9
3,167,373	-				+1.1
3,167,390	-		GFF3099	0.11	+0.8
3,167,472	+		GFF3099	0.21	-0.9
3,167,475	+		GFF3099	0.22	-0.1
3,167,483	-		GFF3099	0.23	-0.5
3,167,483	-		GFF3099	0.23	+0.4
3,167,483	-		GFF3099	0.23	-1.5
3,167,496	+		GFF3099	0.24	+0.1
3,167,524	+		GFF3099	0.28	-0.0
3,167,524	+		GFF3099	0.28	-0.7
3,167,527	-		GFF3099	0.28	-0.3
3,167,532	-		GFF3099	0.29	+0.0
3,167,532	-		GFF3099	0.29	-1.2
3,167,539	+		GFF3099	0.30	+1.2
3,167,544	+		GFF3099	0.30	-1.1
3,167,554	+		GFF3099	0.31	-0.1
3,167,562	-		GFF3099	0.32	+1.8
3,167,562	-		GFF3099	0.32	+0.5
3,167,573	+		GFF3099	0.34	-0.8
3,167,573	+		GFF3099	0.34	-0.2
3,167,577	+		GFF3099	0.34	-1.4
3,167,581	-		GFF3099	0.35	+0.4
3,167,585	-		GFF3099	0.35	-0.9
3,167,587	+		GFF3099	0.36	+0.2
3,167,587	+		GFF3099	0.36	+0.8
3,167,597	+		GFF3099	0.37	+0.9
3,167,597	+		GFF3099	0.37	-2.5
3,167,601	-		GFF3099	0.37	-0.7
3,167,603	+		GFF3099	0.38	-0.2
3,167,605	-		GFF3099	0.38	-1.7
3,167,605	-		GFF3099	0.38	-0.8
3,167,611	-		GFF3099	0.39	+0.1
3,167,611	-		GFF3099	0.39	-0.8
3,167,633	+		GFF3099	0.41	-1.4
3,167,633	-		GFF3099	0.41	+0.5
3,167,640	+		GFF3099	0.42	+0.3
3,167,641	-		GFF3099	0.42	+0.2
3,167,644	+		GFF3099	0.43	-0.6
3,167,652	-		GFF3099	0.44	+0.0
3,167,672	+		GFF3099	0.46	+0.6
3,167,672	+		GFF3099	0.46	-0.4
3,167,672	+		GFF3099	0.46	+0.2
3,167,672	+		GFF3099	0.46	-0.9
3,167,673	+		GFF3099	0.46	-0.2
3,167,680	-		GFF3099	0.47	-2.7
3,167,704	+		GFF3099	0.50	-1.5
3,167,714	+		GFF3099	0.51	+0.2
3,167,722	-		GFF3099	0.52	+1.3
3,167,735	+		GFF3099	0.54	+0.0
3,167,740	+		GFF3099	0.55	-1.6
3,167,743	-		GFF3099	0.55	-0.3
3,167,743	-		GFF3099	0.55	-0.4
3,167,753	-		GFF3099	0.56	+1.7
3,167,753	-		GFF3099	0.56	-0.7
3,167,753	-		GFF3099	0.56	+0.0
3,167,753	-		GFF3099	0.56	-1.6
3,167,757	-		GFF3099	0.57	+0.7
3,167,761	-		GFF3099	0.57	-1.1
3,167,763	-		GFF3099	0.57	-3.3
3,167,776	-		GFF3099	0.59	-0.4
3,167,787	+		GFF3099	0.60	-1.4
3,167,792	+		GFF3099	0.61	-1.7
3,167,796	-		GFF3099	0.61	+0.0
3,167,815	+		GFF3099	0.64	+0.1
3,167,815	+		GFF3099	0.64	-0.5
3,167,815	+		GFF3099	0.64	-0.2
3,167,815	+		GFF3099	0.64	+1.4
3,167,815	+		GFF3099	0.64	-1.4
3,167,815	+		GFF3099	0.64	+0.4
3,167,823	-		GFF3099	0.65	-0.9
3,167,823	-		GFF3099	0.65	+0.8
3,167,823	-		GFF3099	0.65	-1.6
3,167,823	-		GFF3099	0.65	-0.3
3,167,823	-		GFF3099	0.65	-0.2
3,167,825	+		GFF3099	0.65	+0.2
3,167,833	-		GFF3099	0.66	+0.1
3,167,842	+		GFF3099	0.67	-0.2
3,167,869	-		GFF3099	0.71	-0.7
3,167,874	-		GFF3099	0.71	+0.6
3,167,879	+		GFF3099	0.72	-1.7
3,167,917	-		GFF3099	0.76	-0.9
3,167,926	-		GFF3099	0.78	-2.3
3,167,928	-		GFF3099	0.78	-0.8
3,167,942	-		GFF3099	0.80	+0.1
3,167,943	-		GFF3099	0.80	+0.5
3,167,943	-		GFF3099	0.80	+1.0
3,167,955	+		GFF3099	0.81	+0.6
3,167,955	+		GFF3099	0.81	-0.9
3,167,963	-		GFF3099	0.82	+0.4
3,167,966	+		GFF3099	0.83	-1.1
3,167,973	-		GFF3099	0.83	+0.4
3,168,026	+				+0.9
3,168,026	+				+0.7
3,168,026	+				+0.2
3,168,046	-				+0.3
3,168,075	+				-1.5
3,168,082	+				-0.1
3,168,091	+				-0.7
3,168,091	+				-0.4
3,168,107	+				+2.1
3,168,109	-				-1.8
3,168,115	-				+0.6
3,168,128	+				-2.2
3,168,137	-				+0.8
3,168,156	+				-1.4
3,168,174	+				-1.0
3,168,174	+				-0.1
3,168,182	-				+0.3
3,168,194	-				+0.6
3,168,195	-				+0.3
3,168,224	+				-0.4
3,168,237	-				+0.2
3,168,262	-				-0.2
3,168,284	+				+0.5
3,168,297	-				-1.0
3,168,297	-				-0.0
3,168,304	-				-0.2
3,168,320	-				+0.9
3,168,331	-		GFF3100	0.10	+0.0
3,168,346	-		GFF3100	0.11	+1.2
3,168,373	+		GFF3100	0.13	+0.1
3,168,381	-		GFF3100	0.13	+0.1
3,168,390	-		GFF3100	0.14	-2.0
3,168,398	-		GFF3100	0.14	-0.1
3,168,398	-		GFF3100	0.14	+0.1
3,168,398	-		GFF3100	0.14	-0.2
3,168,399	+		GFF3100	0.14	-1.9
3,168,407	-		GFF3100	0.15	+0.1
3,168,407	-		GFF3100	0.15	-0.3
3,168,407	-		GFF3100	0.15	+0.2
3,168,410	+		GFF3100	0.15	+0.7
3,168,410	+		GFF3100	0.15	-0.1
3,168,410	+		GFF3100	0.15	-1.8
3,168,410	+		GFF3100	0.15	+0.4
3,168,412	-		GFF3100	0.15	-0.6
3,168,412	-		GFF3100	0.15	+0.8
3,168,414	-		GFF3100	0.15	-1.3
3,168,418	-		GFF3100	0.16	-1.5
3,168,418	-		GFF3100	0.16	+0.3
3,168,418	-		GFF3100	0.16	-0.1
3,168,418	-		GFF3100	0.16	-0.6
3,168,418	-		GFF3100	0.16	-0.7
3,168,437	-		GFF3100	0.17	-0.5
3,168,458	+		GFF3100	0.18	+0.7
3,168,458	+		GFF3100	0.18	+0.3
3,168,458	+		GFF3100	0.18	-0.3
3,168,466	-		GFF3100	0.18	-0.9
3,168,467	-		GFF3100	0.19	+0.4
3,168,494	+		GFF3100	0.20	+0.3
3,168,511	+		GFF3100	0.21	+0.0
3,168,533	+		GFF3100	0.23	-0.1
3,168,543	+		GFF3100	0.23	-0.5
3,168,580	+		GFF3100	0.25	-0.3
3,168,580	+		GFF3100	0.25	-1.1
3,168,602	+		GFF3100	0.27	-2.2
3,168,620	+		GFF3100	0.28	-2.3
3,168,633	-		GFF3100	0.29	-0.3
3,168,637	+		GFF3100	0.29	-0.1
3,168,643	+		GFF3100	0.29	+0.9
3,168,645	+		GFF3100	0.29	-0.3
3,168,650	-		GFF3100	0.30	-0.3
3,168,654	+		GFF3100	0.30	-2.2
3,168,654	+		GFF3100	0.30	+0.0
3,168,655	+		GFF3100	0.30	-1.3
3,168,659	+		GFF3100	0.30	+1.1
3,168,664	+		GFF3100	0.31	-1.5
3,168,692	+		GFF3100	0.32	-0.2
3,168,700	+		GFF3100	0.33	-1.7
3,168,702	+		GFF3100	0.33	-0.5
3,168,702	+		GFF3100	0.33	-0.9
3,168,702	+		GFF3100	0.33	-1.8
3,168,710	-		GFF3100	0.33	+0.7
3,168,733	+		GFF3100	0.35	-1.0
3,168,748	+		GFF3100	0.36	+0.0
3,168,770	+		GFF3100	0.37	-0.2
3,168,772	+		GFF3100	0.37	+0.0
3,168,772	+		GFF3100	0.37	-0.5
3,168,772	+		GFF3100	0.37	+1.1
3,168,772	+		GFF3100	0.37	+0.2
3,168,772	+		GFF3100	0.37	+0.4
3,168,772	+		GFF3100	0.37	+0.7
3,168,772	+		GFF3100	0.37	-0.7
3,168,778	-		GFF3100	0.38	-2.3
3,168,780	+		GFF3100	0.38	-0.2
3,168,780	-		GFF3100	0.38	-1.3
3,168,780	-		GFF3100	0.38	-0.3
3,168,780	-		GFF3100	0.38	-1.6
3,168,780	-		GFF3100	0.38	-0.7
3,168,780	-		GFF3100	0.38	-1.1
3,168,782	+		GFF3100	0.38	-1.0
3,168,802	+		GFF3100	0.39	-0.2
3,168,837	-		GFF3100	0.41	-1.5
3,168,889	-		GFF3100	0.44	-1.1
3,168,889	-		GFF3100	0.44	-0.6
3,168,911	-		GFF3100	0.46	-2.5
3,168,937	-		GFF3100	0.47	-2.3
3,168,956	-		GFF3100	0.48	-0.6
3,168,975	+		GFF3100	0.50	-0.5
3,168,983	-		GFF3100	0.50	+0.2
3,169,003	+		GFF3100	0.51	-2.3
3,169,012	+		GFF3100	0.52	-1.1
3,169,019	+		GFF3100	0.52	+0.3
3,169,025	-		GFF3100	0.53	+0.2
3,169,025	-		GFF3100	0.53	+0.5
3,169,047	-		GFF3100	0.54	+1.1
3,169,068	-		GFF3100	0.55	+1.1
3,169,073	-		GFF3100	0.56	+0.3