Strain Fitness in Sphingobium sp. HT1-2 around GFF3090

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,154,740	+				-0.5
3,154,758	-				+0.3
3,154,765	+				+0.3
3,154,768	-				+0.2
3,154,768	-				-0.2
3,154,768	-				+0.6
3,154,768	-				-0.9
3,154,770	+				-2.3
3,154,773	-				-1.6
3,154,782	+				-1.4
3,154,790	-				+0.3
3,154,790	-				-1.3
3,154,790	-				+1.3
3,154,868	-				-0.5
3,154,872	+				+0.4
3,154,872	+				+0.6
3,154,872	+				-0.0
3,154,872	+				-1.5
3,154,872	+				+0.2
3,154,880	-				-2.0
3,154,880	-				+0.7
3,154,880	-				+1.3
3,154,880	-				-1.7
3,154,882	+				-0.0
3,154,882	+				+1.2
3,154,882	+				-0.5
3,154,902	-				+1.0
3,154,902	-				-1.4
3,154,915	+				-0.3
3,154,917	+				+0.0
3,154,918	-				+0.9
3,154,918	-				+0.5
3,154,925	-				-0.3
3,154,927	-				-1.3
3,154,958	-				+0.9
3,154,999	+				-1.4
3,155,009	+				-0.8
3,155,043	+				-0.2
3,155,051	-				+0.8
3,155,051	-				-1.8
3,155,051	-				-1.0
3,155,051	-				+0.5
3,155,059	+				+0.8
3,155,086	+				-1.8
3,155,086	+				-1.7
3,155,086	+				-1.6
3,155,094	+				-1.8
3,155,094	-				+0.5
3,155,094	-				-1.0
3,155,094	-				+0.2
3,155,094	-				-0.0
3,155,097	+				+0.0
3,155,107	-				+0.9
3,155,133	+				+0.2
3,155,133	+				-0.1
3,155,141	-				+2.0
3,155,175	+				-0.4
3,155,183	-				-0.3
3,155,195	+				+0.1
3,155,201	+				-0.3
3,155,201	+				+1.6
3,155,209	-				+1.9
3,155,209	-				-0.3
3,155,209	-				-1.3
3,155,209	-				+0.5
3,155,209	-				+1.3
3,155,211	-				-1.3
3,155,227	-				+0.5
3,155,233	+				-0.1
3,155,270	-		GFF3089	0.15	-0.3
3,155,273	+		GFF3089	0.16	+0.8
3,155,280	+		GFF3089	0.17	+0.9
3,155,280	+		GFF3089	0.17	-1.3
3,155,280	+		GFF3089	0.17	-0.2
3,155,280	+		GFF3089	0.17	-0.5
3,155,280	+		GFF3089	0.17	+0.2
3,155,280	+		GFF3089	0.17	-1.8
3,155,283	-		GFF3089	0.18	+0.2
3,155,288	-		GFF3089	0.19	+0.3
3,155,288	-		GFF3089	0.19	-1.2
3,155,288	-		GFF3089	0.19	-1.7
3,155,316	+		GFF3089	0.24	-0.2
3,155,340	+		GFF3089	0.28	+0.4
3,155,357	+		GFF3089	0.32	-0.6
3,155,357	+		GFF3089	0.32	-0.2
3,155,365	-		GFF3089	0.33	-1.0
3,155,365	-		GFF3089	0.33	-1.3
3,155,365	-		GFF3089	0.33	-0.2
3,155,370	+		GFF3089	0.34	-0.5
3,155,380	+		GFF3089	0.36	+0.3
3,155,385	+		GFF3089	0.37	+0.4
3,155,385	+		GFF3089	0.37	-0.6
3,155,385	+		GFF3089	0.37	+0.0
3,155,385	+		GFF3089	0.37	-1.3
3,155,385	+		GFF3089	0.37	-0.8
3,155,385	+		GFF3089	0.37	-0.2
3,155,385	+		GFF3089	0.37	-0.6
3,155,385	+		GFF3089	0.37	-1.0
3,155,385	+		GFF3089	0.37	-1.0
3,155,385	+		GFF3089	0.37	+0.3
3,155,385	+		GFF3089	0.37	-0.8
3,155,385	+		GFF3089	0.37	+0.6
3,155,385	+		GFF3089	0.37	+0.6
3,155,385	+		GFF3089	0.37	+0.4
3,155,388	-		GFF3089	0.37	-1.6
3,155,393	-		GFF3089	0.38	+1.3
3,155,393	-		GFF3089	0.38	-0.5
3,155,393	-		GFF3089	0.38	-0.9
3,155,393	-		GFF3089	0.38	-2.1
3,155,393	-		GFF3089	0.38	+0.5
3,155,393	-		GFF3089	0.38	+0.6
3,155,403	+		GFF3089	0.40	-0.3
3,155,403	+		GFF3089	0.40	-0.0
3,155,413	+		GFF3089	0.42	-1.3
3,155,416	-		GFF3089	0.43	+0.6
3,155,421	-		GFF3089	0.44	-0.1
3,155,421	-		GFF3089	0.44	+1.2
3,155,426	-		GFF3089	0.45	-0.3
3,155,439	+		GFF3089	0.47	-0.4
3,155,439	+		GFF3089	0.47	-0.8
3,155,442	-		GFF3089	0.48	+0.1
3,155,452	-		GFF3089	0.49	-0.8
3,155,496	+		GFF3089	0.58	-1.7
3,155,496	+		GFF3089	0.58	-0.4
3,155,497	+		GFF3089	0.58	-0.8
3,155,497	+		GFF3089	0.58	+0.2
3,155,497	+		GFF3089	0.58	+1.8
3,155,497	+		GFF3089	0.58	-2.0
3,155,497	+		GFF3089	0.58	-0.5
3,155,497	+		GFF3089	0.58	+0.8
3,155,504	-		GFF3089	0.59	+0.7
3,155,504	-		GFF3089	0.59	-0.9
3,155,505	-		GFF3089	0.59	-0.9
3,155,505	-		GFF3089	0.59	-0.1
3,155,523	-		GFF3089	0.63	+0.6
3,155,525	+		GFF3089	0.63	-0.1
3,155,571	-		GFF3089	0.72	-1.6
3,155,601	-		GFF3089	0.77	-1.0
3,155,620	-		GFF3089	0.81	-0.2
3,155,629	+		GFF3089	0.83	-0.8
3,155,629	+		GFF3089	0.83	+0.1
3,155,629	+		GFF3089	0.83	-1.1
3,155,629	+		GFF3089	0.83	-0.6
3,155,629	+		GFF3089	0.83	-0.9
3,155,629	+		GFF3089	0.83	-0.1
3,155,629	+		GFF3089	0.83	-1.7
3,155,629	+		GFF3089	0.83	+0.3
3,155,629	+		GFF3089	0.83	-1.4
3,155,634	+		GFF3089	0.84	-1.4
3,155,637	-		GFF3089	0.84	+0.9
3,155,637	-		GFF3089	0.84	-0.1
3,155,637	-		GFF3089	0.84	+0.6
3,155,637	-		GFF3089	0.84	-0.5
3,155,692	+				+0.3
3,155,700	-				+0.8
3,155,710	+				-0.1
3,155,710	-				+0.7
3,155,720	-				-0.5
3,155,722	-				+0.7
3,155,743	+				+0.3
3,155,743	+				-1.7
3,155,751	-				+0.2
3,155,767	+		GFF3090	0.13	-1.3
3,155,768	+		GFF3090	0.14	-0.7
3,155,769	+		GFF3090	0.14	-1.3
3,155,774	+		GFF3090	0.15	-0.3
3,155,774	+		GFF3090	0.15	-0.8
3,155,774	+		GFF3090	0.15	-0.1
3,155,774	+		GFF3090	0.15	+0.8
3,155,777	-		GFF3090	0.16	-0.4
3,155,779	+		GFF3090	0.17	+0.3
3,155,782	-		GFF3090	0.17	+0.6
3,155,782	-		GFF3090	0.17	-0.1
3,155,792	+		GFF3090	0.20	+0.1
3,155,800	-		GFF3090	0.22	-0.3
3,155,812	+		GFF3090	0.26	-0.1
3,155,812	+		GFF3090	0.26	-1.0
3,155,812	+		GFF3090	0.26	+0.5
3,155,820	-		GFF3090	0.28	-0.5
3,155,820	-		GFF3090	0.28	+0.7
3,155,820	-		GFF3090	0.28	-0.7
3,155,820	-		GFF3090	0.28	-0.4
3,155,820	-		GFF3090	0.28	+0.2
3,155,820	-		GFF3090	0.28	-0.1
3,155,820	-		GFF3090	0.28	-0.0
3,155,822	-		GFF3090	0.28	+0.9
3,155,824	-		GFF3090	0.29	+0.7
3,155,826	-		GFF3090	0.30	+1.1
3,155,856	+		GFF3090	0.38	-1.7
3,155,887	+		GFF3090	0.46	+0.2
3,155,921	+		GFF3090	0.55	+0.6
3,155,925	+		GFF3090	0.57	-0.1
3,155,929	-		GFF3090	0.58	+0.5
3,155,929	-		GFF3090	0.58	+0.1
3,155,983	+		GFF3090	0.72	+0.2
3,155,983	+		GFF3090	0.72	+0.5
3,155,990	+		GFF3090	0.74	+0.7
3,155,991	-		GFF3090	0.75	-0.3
3,156,000	+		GFF3090	0.77	-0.8
3,156,008	-		GFF3090	0.79	+1.6
3,156,008	-		GFF3090	0.79	-0.6
3,156,008	-		GFF3090	0.79	-0.2
3,156,008	-		GFF3090	0.79	+0.0
3,156,008	-		GFF3090	0.79	-1.4
3,156,008	-		GFF3090	0.79	-0.7
3,156,025	-		GFF3090	0.84	+0.6
3,156,026	+		GFF3090	0.84	-1.3
3,156,034	-		GFF3090	0.86	+0.4
3,156,041	+		GFF3090	0.88	+1.3
3,156,055	-				-0.8
3,156,057	+				+0.2
3,156,087	+				-0.4
3,156,108	+				-0.1
3,156,108	+				-1.6
3,156,109	+				-0.9
3,156,116	-				-0.2
3,156,117	-				-0.4
3,156,118	+				+0.7
3,156,118	+				-1.1
3,156,160	+				+0.3
3,156,160	+				-2.6
3,156,160	+				-0.7
3,156,168	-				-1.7
3,156,176	-				+1.0
3,156,178	+		GFF3091	0.10	+0.3
3,156,214	+		GFF3091	0.16	-0.6
3,156,219	+		GFF3091	0.17	+2.0
3,156,219	+		GFF3091	0.17	+0.6
3,156,222	-		GFF3091	0.17	-0.0
3,156,227	-		GFF3091	0.18	+0.3
3,156,227	-		GFF3091	0.18	+0.8
3,156,227	-		GFF3091	0.18	-1.9
3,156,227	-		GFF3091	0.18	+1.2
3,156,250	+		GFF3091	0.22	-0.0
3,156,251	+		GFF3091	0.22	-2.5
3,156,262	+		GFF3091	0.24	-0.0
3,156,262	+		GFF3091	0.24	-2.1
3,156,262	+		GFF3091	0.24	-1.1
3,156,262	+		GFF3091	0.24	-0.2
3,156,270	-		GFF3091	0.25	-1.3
3,156,270	-		GFF3091	0.25	-1.6
3,156,312	-		GFF3091	0.32	+0.3
3,156,330	+		GFF3091	0.35	-0.3
3,156,332	-		GFF3091	0.35	-0.5
3,156,335	+		GFF3091	0.35	-2.2
3,156,343	+		GFF3091	0.37	+0.2
3,156,343	-		GFF3091	0.37	-1.3
3,156,343	-		GFF3091	0.37	+0.9
3,156,343	-		GFF3091	0.37	-0.6
3,156,351	-		GFF3091	0.38	-0.8
3,156,363	+		GFF3091	0.40	-1.8
3,156,366	-		GFF3091	0.40	+0.6
3,156,378	-		GFF3091	0.42	+1.1
3,156,378	-		GFF3091	0.42	-0.1
3,156,395	+		GFF3091	0.45	-0.2
3,156,409	-		GFF3091	0.47	-0.4
3,156,410	+		GFF3091	0.48	-2.0
3,156,410	+		GFF3091	0.48	+0.3
3,156,410	+		GFF3091	0.48	+0.2
3,156,410	+		GFF3091	0.48	-0.9
3,156,423	-		GFF3091	0.50	-0.9
3,156,427	+		GFF3091	0.50	-0.6
3,156,433	+		GFF3091	0.51	+0.1
3,156,433	+		GFF3091	0.51	-1.5
3,156,435	-		GFF3091	0.52	-0.3
3,156,436	-		GFF3091	0.52	-0.3
3,156,454	+		GFF3091	0.55	-0.5
3,156,458	+		GFF3091	0.55	+1.0
3,156,459	+		GFF3091	0.56	-1.5
3,156,462	-		GFF3091	0.56	+0.6
3,156,462	-		GFF3091	0.56	-0.0
3,156,466	-		GFF3091	0.57	-0.8
3,156,467	-		GFF3091	0.57	+0.3
3,156,467	-		GFF3091	0.57	-0.2
3,156,467	-		GFF3091	0.57	-1.5
3,156,472	-		GFF3091	0.58	-2.5
3,156,481	+		GFF3091	0.59	-1.0
3,156,483	+		GFF3091	0.59	-0.9
3,156,483	+		GFF3091	0.59	-0.6
3,156,488	+		GFF3091	0.60	-1.1
3,156,491	-		GFF3091	0.61	+0.0
3,156,491	-		GFF3091	0.61	+0.9
3,156,491	-		GFF3091	0.61	+1.4
3,156,491	-		GFF3091	0.61	-1.1
3,156,492	-		GFF3091	0.61	-0.1
3,156,516	-		GFF3091	0.65	-2.9
3,156,517	+		GFF3091	0.65	-0.8
3,156,519	+		GFF3091	0.65	+0.1
3,156,535	-		GFF3091	0.68	-0.2
3,156,558	+		GFF3091	0.72	-0.7
3,156,558	+		GFF3091	0.72	+1.3
3,156,558	+		GFF3091	0.72	-2.6
3,156,566	-		GFF3091	0.73	+0.8
3,156,566	-		GFF3091	0.73	-0.1
3,156,566	-		GFF3091	0.73	+0.2
3,156,568	+		GFF3091	0.73	-0.2
3,156,576	-		GFF3091	0.74	-0.9
3,156,579	-		GFF3091	0.75	-0.2
3,156,584	-		GFF3091	0.76	-0.4
3,156,584	-		GFF3091	0.76	-2.1
3,156,612	+		GFF3091	0.80	-1.3
3,156,620	-		GFF3091	0.82	-0.1
3,156,632	+		GFF3091	0.83	+0.3
3,156,647	-		GFF3091	0.86	-0.4
3,156,670	+		GFF3091	0.90	-0.4
3,156,698	+				-0.1
3,156,698	+				-0.6
3,156,703	+				-0.2
3,156,703	+				-1.0
3,156,703	+				-1.1
3,156,703	+				-0.1
3,156,703	+				-0.2
3,156,703	+				+0.6
3,156,703	+				+0.3
3,156,703	+				+1.1
3,156,703	+				-0.2
3,156,706	-				+1.5
3,156,706	-				-0.5
3,156,706	-				-0.3
3,156,711	-				-0.2
3,156,711	-				-1.5
3,156,713	-				+1.8
3,156,727	+				+0.8
3,156,740	-				-3.0
3,156,743	+				+0.2
3,156,758	+				-0.9
3,156,775	+				-1.4
3,156,780	+				-0.1
3,156,780	+				-1.0
3,156,783	-				-0.3
3,156,788	-				+0.1
3,156,788	-				+0.3
3,156,788	-				-0.3
3,156,792	+		GFF3092	0.10	-0.1
3,156,799	-		GFF3092	0.12	-0.4
3,156,799	-		GFF3092	0.12	+0.7
3,156,813	-		GFF3092	0.14	-0.8
3,156,815	+		GFF3092	0.14	-2.9
3,156,866	-		GFF3092	0.23	+0.3
3,156,876	+		GFF3092	0.24	+0.0
3,156,876	+		GFF3092	0.24	+0.0
3,156,886	+		GFF3092	0.26	-1.4
3,156,888	+		GFF3092	0.26	+0.9
3,156,896	-		GFF3092	0.28	-0.3
3,156,903	+		GFF3092	0.29	+0.1
3,156,906	-		GFF3092	0.29	-1.1
3,156,911	-		GFF3092	0.30	-1.1
3,156,941	-		GFF3092	0.35	+0.3
3,156,956	+		GFF3092	0.38	-0.8
3,156,963	-		GFF3092	0.39	+0.7
3,156,964	-		GFF3092	0.39	-1.0
3,156,966	+		GFF3092	0.40	-0.3
3,156,969	-		GFF3092	0.40	-1.6
3,156,974	-		GFF3092	0.41	+0.0
3,156,974	-		GFF3092	0.41	+0.6
3,156,999	+		GFF3092	0.45	+1.3
3,156,999	-		GFF3092	0.45	-1.7
3,157,004	+		GFF3092	0.46	+0.6
3,157,007	-		GFF3092	0.46	-0.4
3,157,007	-		GFF3092	0.46	-1.0
3,157,014	+		GFF3092	0.48	+0.8
3,157,014	+		GFF3092	0.48	-1.4
3,157,022	-		GFF3092	0.49	-0.0
3,157,024	+		GFF3092	0.49	-1.7
3,157,031	-		GFF3092	0.50	-0.4
3,157,044	+		GFF3092	0.53	-0.7
3,157,054	-		GFF3092	0.54	-0.6
3,157,058	-		GFF3092	0.55	-0.5
3,157,070	+		GFF3092	0.57	-1.2
3,157,075	+		GFF3092	0.58	-0.3
3,157,083	-		GFF3092	0.59	-0.1