Strain Fitness in Sphingobium sp. HT1-2 around GFF3088

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,152,748	-				+0.5
3,152,748	-				+0.7
3,152,759	+				-0.5
3,152,759	+				+0.6
3,152,759	+				+0.4
3,152,759	+				+0.2
3,152,764	+				+0.1
3,152,767	-				-2.7
3,152,767	-				-2.4
3,152,767	-				-0.2
3,152,767	-				+0.7
3,152,767	-				-1.3
3,152,778	-				-1.8
3,152,778	-				+0.4
3,152,802	+				+0.3
3,152,821	+				+1.0
3,152,829	-				-0.4
3,152,829	-				+0.1
3,152,839	-				-0.5
3,152,841	+				+0.0
3,152,847	-				-0.4
3,152,849	-				-0.7
3,152,849	-				+0.4
3,152,887	-				-1.1
3,152,894	-				+0.2
3,152,939	+				-0.4
3,152,994	-				+1.3
3,152,996	-				-0.3
3,152,996	-				-0.6
3,152,996	-				+0.5
3,152,996	-				-1.7
3,152,996	-				-1.7
3,152,996	-				-1.2
3,152,996	-				+0.6
3,152,996	-				-0.1
3,152,996	-				-1.5
3,153,053	+				+0.0
3,153,060	+				-0.1
3,153,060	+				-1.8
3,153,060	+				-0.8
3,153,060	+				-1.1
3,153,068	-				+0.2
3,153,068	-				-0.0
3,153,068	-				-0.1
3,153,068	-				-0.1
3,153,068	-				-0.7
3,153,070	+				+0.2
3,153,070	+				+0.2
3,153,070	+				+0.4
3,153,070	+				-0.2
3,153,070	+				-0.3
3,153,070	+				-2.9
3,153,070	+				+0.5
3,153,070	+				+0.2
3,153,070	+				+0.4
3,153,070	+				-0.9
3,153,070	+				-2.6
3,153,070	+				-0.1
3,153,070	+				-0.8
3,153,073	-				-0.9
3,153,073	-				+0.2
3,153,073	-				-1.6
3,153,078	-				+0.8
3,153,078	-				+1.2
3,153,078	-				-1.1
3,153,078	-				-0.9
3,153,078	-				-0.2
3,153,078	-				-1.1
3,153,078	-				+0.5
3,153,078	-				+0.3
3,153,078	-				-0.5
3,153,078	-				-0.5
3,153,078	-				-0.3
3,153,078	-				+0.2
3,153,078	-				+0.9
3,153,078	-				+0.4
3,153,078	-				-1.6
3,153,079	-				-0.1
3,153,081	+				-1.8
3,153,081	+				-0.3
3,153,109	+				-1.3
3,153,139	+				-2.2
3,153,161	+				-1.3
3,153,591	+				-0.2
3,153,591	+				-1.5
3,153,646	+				-0.7
3,153,646	+				+0.1
3,153,646	+				+0.5
3,153,646	+				-0.4
3,153,646	+				+0.0
3,153,646	+				+0.1
3,153,654	-				-1.4
3,153,654	-				+0.8
3,153,654	-				-0.3
3,153,654	-				-1.1
3,153,654	-				-1.1
3,153,654	-				-1.8
3,153,664	-				-1.0
3,153,670	+				+1.3
3,153,670	+				+0.6
3,153,678	-				-1.4
3,153,694	-				-0.9
3,153,694	-				+0.1
3,153,705	-				-0.1
3,153,722	+				+1.0
3,153,731	+				-0.7
3,153,739	-				+0.1
3,153,739	-				+0.2
3,153,739	-				-0.1
3,153,754	-				-1.2
3,153,773	+				+1.0
3,153,773	+				-1.8
3,153,773	+				+0.5
3,153,773	+				+1.0
3,153,773	+				-0.4
3,153,774	+				-0.5
3,153,775	+				-2.1
3,153,781	-				-0.5
3,153,781	-				-1.0
3,153,781	-				+0.5
3,153,781	-				-0.7
3,153,781	-				+1.4
3,153,783	+				-0.1
3,153,788	+				-0.1
3,153,791	-				-0.8
3,153,833	+		GFF3088	0.13	-0.6
3,153,875	+		GFF3088	0.18	+0.1
3,153,875	+		GFF3088	0.18	-0.7
3,153,880	+		GFF3088	0.19	-0.6
3,153,880	+		GFF3088	0.19	+0.3
3,153,883	-		GFF3088	0.19	-1.6
3,153,885	+		GFF3088	0.20	-1.4
3,153,888	-		GFF3088	0.20	-1.6
3,153,888	-		GFF3088	0.20	+0.1
3,153,905	-		GFF3088	0.22	-0.8
3,153,926	-		GFF3088	0.25	-0.3
3,153,928	+		GFF3088	0.25	-1.5
3,153,931	-		GFF3088	0.25	-0.3
3,153,931	-		GFF3088	0.25	+0.9
3,153,936	+		GFF3088	0.26	-0.9
3,153,938	-		GFF3088	0.26	-1.9
3,153,943	-		GFF3088	0.27	+0.4
3,153,944	-		GFF3088	0.27	-0.3
3,153,984	+		GFF3088	0.32	-0.3
3,153,992	-		GFF3088	0.33	-0.4
3,153,992	-		GFF3088	0.33	-1.6
3,154,015	-		GFF3088	0.36	+0.3
3,154,019	+		GFF3088	0.36	-0.1
3,154,030	-		GFF3088	0.38	-0.9
3,154,042	+		GFF3088	0.39	-1.3
3,154,042	+		GFF3088	0.39	-0.0
3,154,042	+		GFF3088	0.39	-0.8
3,154,045	+		GFF3088	0.40	-0.9
3,154,045	+		GFF3088	0.40	-1.9
3,154,050	-		GFF3088	0.40	-2.3
3,154,050	-		GFF3088	0.40	-1.2
3,154,062	+		GFF3088	0.42	-0.5
3,154,067	+		GFF3088	0.43	-0.7
3,154,067	+		GFF3088	0.43	+0.2
3,154,075	-		GFF3088	0.44	-0.6
3,154,075	-		GFF3088	0.44	+1.2
3,154,119	+		GFF3088	0.49	-0.5
3,154,119	+		GFF3088	0.49	+0.7
3,154,127	-		GFF3088	0.50	-0.8
3,154,127	-		GFF3088	0.50	-0.4
3,154,145	-		GFF3088	0.52	+0.4
3,154,160	+		GFF3088	0.54	+0.1
3,154,160	+		GFF3088	0.54	+0.1
3,154,165	+		GFF3088	0.55	+0.7
3,154,174	-		GFF3088	0.56	+1.2
3,154,201	+		GFF3088	0.59	-0.2
3,154,205	-		GFF3088	0.60	-0.2
3,154,206	+		GFF3088	0.60	-1.0
3,154,206	+		GFF3088	0.60	+0.5
3,154,206	+		GFF3088	0.60	-0.3
3,154,206	+		GFF3088	0.60	+1.3
3,154,206	+		GFF3088	0.60	-1.0
3,154,214	-		GFF3088	0.61	+0.4
3,154,261	+		GFF3088	0.67	+0.8
3,154,261	+		GFF3088	0.67	+0.5
3,154,269	-		GFF3088	0.68	-1.3
3,154,275	+		GFF3088	0.69	-0.2
3,154,283	-		GFF3088	0.70	+0.8
3,154,283	-		GFF3088	0.70	+1.1
3,154,285	+		GFF3088	0.70	-0.6
3,154,285	+		GFF3088	0.70	+0.2
3,154,287	+		GFF3088	0.70	+0.2
3,154,293	-		GFF3088	0.71	-0.7
3,154,293	-		GFF3088	0.71	-0.3
3,154,303	-		GFF3088	0.72	+0.3
3,154,309	+		GFF3088	0.73	-0.7
3,154,314	+		GFF3088	0.74	-0.2
3,154,314	+		GFF3088	0.74	-1.5
3,154,327	-		GFF3088	0.75	+0.4
3,154,347	-		GFF3088	0.78	+0.1
3,154,355	-		GFF3088	0.79	-0.2
3,154,357	+		GFF3088	0.79	+1.1
3,154,367	+		GFF3088	0.80	+0.3
3,154,367	+		GFF3088	0.80	-0.8
3,154,367	+		GFF3088	0.80	+0.2
3,154,368	+		GFF3088	0.80	+0.5
3,154,375	-		GFF3088	0.81	+0.4
3,154,375	-		GFF3088	0.81	-0.2
3,154,375	-		GFF3088	0.81	+0.7
3,154,375	-		GFF3088	0.81	+1.1
3,154,377	-		GFF3088	0.82	-1.3
3,154,399	+		GFF3088	0.84	-0.1
3,154,399	+		GFF3088	0.84	-0.8
3,154,399	+		GFF3088	0.84	-0.6
3,154,451	+				-0.2
3,154,458	+				+0.6
3,154,458	+				-0.4
3,154,459	-				+0.9
3,154,463	+				+0.1
3,154,463	+				-0.4
3,154,463	+				+0.9
3,154,466	-				-1.5
3,154,466	-				-1.4
3,154,468	+				-1.3
3,154,468	+				-0.5
3,154,468	+				-1.9
3,154,468	+				-0.5
3,154,468	+				-2.4
3,154,468	+				-0.8
3,154,468	+				+0.3
3,154,468	+				+0.1
3,154,471	+				-0.6
3,154,471	-				-0.3
3,154,471	-				+0.4
3,154,471	-				+0.1
3,154,476	-				-1.3
3,154,476	-				+0.3
3,154,476	-				-0.5
3,154,476	-				+0.1
3,154,476	-				-0.1
3,154,476	-				+0.0
3,154,484	-				-0.0
3,154,498	+				-0.4
3,154,503	+				+0.6
3,154,503	+				+0.4
3,154,503	+				-0.9
3,154,503	+				+0.4
3,154,506	-				+1.2
3,154,506	-				-0.3
3,154,506	-				+0.1
3,154,508	+				-0.5
3,154,508	+				-0.4
3,154,508	+				-0.8
3,154,508	+				-0.2
3,154,508	+				-0.7
3,154,508	+				-1.1
3,154,511	-				-0.6
3,154,511	-				-0.0
3,154,516	-				+0.3
3,154,516	-				-0.3
3,154,516	-				+0.5
3,154,548	+				-1.7
3,154,551	-				-0.8
3,154,566	+				+0.2
3,154,574	-				-0.5
3,154,574	-				+0.5
3,154,598	-				-2.4
3,154,610	-				-0.4
3,154,613	-				-0.1
3,154,647	+				-1.7
3,154,670	+				-0.8
3,154,670	-				+0.5
3,154,670	-				-0.0
3,154,672	+				-1.2
3,154,672	+				-0.6
3,154,672	+				-0.3
3,154,672	+				-2.3
3,154,680	-				-0.7
3,154,680	-				-0.6
3,154,706	+				+1.1
3,154,714	-				-0.1
3,154,714	-				-0.6
3,154,740	+				-0.5
3,154,758	-				+0.3
3,154,765	+				+0.3
3,154,768	-				+0.2
3,154,768	-				-0.2
3,154,768	-				+0.6
3,154,768	-				-0.9
3,154,770	+				-2.3
3,154,773	-				-1.6
3,154,782	+				-1.4
3,154,790	-				+0.3
3,154,790	-				-1.3
3,154,790	-				+1.3
3,154,868	-				-0.5
3,154,872	+				+0.4
3,154,872	+				+0.6
3,154,872	+				-0.0
3,154,872	+				-1.5
3,154,872	+				+0.2
3,154,880	-				-2.0
3,154,880	-				+0.7
3,154,880	-				+1.3
3,154,880	-				-1.7
3,154,882	+				-0.0
3,154,882	+				+1.2
3,154,882	+				-0.5
3,154,902	-				+1.0
3,154,902	-				-1.4
3,154,915	+				-0.3
3,154,917	+				+0.0
3,154,918	-				+0.9
3,154,918	-				+0.5
3,154,925	-				-0.3
3,154,927	-				-1.3
3,154,958	-				+0.9
3,154,999	+				-1.4
3,155,009	+				-0.8
3,155,043	+				-0.2
3,155,051	-				+0.8
3,155,051	-				-1.8
3,155,051	-				-1.0
3,155,051	-				+0.5
3,155,059	+				+0.8
3,155,086	+				-1.8
3,155,086	+				-1.7
3,155,086	+				-1.6
3,155,094	+				-1.8
3,155,094	-				+0.5
3,155,094	-				-1.0
3,155,094	-				+0.2
3,155,094	-				-0.0
3,155,097	+				+0.0
3,155,107	-				+0.9
3,155,133	+				+0.2
3,155,133	+				-0.1
3,155,141	-				+2.0
3,155,175	+				-0.4
3,155,183	-				-0.3
3,155,195	+				+0.1
3,155,201	+				-0.3
3,155,201	+				+1.6
3,155,209	-				+1.9
3,155,209	-				-0.3
3,155,209	-				-1.3
3,155,209	-				+0.5
3,155,209	-				+1.3
3,155,211	-				-1.3
3,155,227	-				+0.5
3,155,233	+				-0.1
3,155,270	-		GFF3089	0.15	-0.3
3,155,273	+		GFF3089	0.16	+0.8
3,155,280	+		GFF3089	0.17	+0.9
3,155,280	+		GFF3089	0.17	-1.3
3,155,280	+		GFF3089	0.17	-0.2
3,155,280	+		GFF3089	0.17	-0.5
3,155,280	+		GFF3089	0.17	+0.2
3,155,280	+		GFF3089	0.17	-1.8
3,155,283	-		GFF3089	0.18	+0.2
3,155,288	-		GFF3089	0.19	+0.3
3,155,288	-		GFF3089	0.19	-1.2
3,155,288	-		GFF3089	0.19	-1.7
3,155,316	+		GFF3089	0.24	-0.2
3,155,340	+		GFF3089	0.28	+0.4
3,155,357	+		GFF3089	0.32	-0.6
3,155,357	+		GFF3089	0.32	-0.2
3,155,365	-		GFF3089	0.33	-1.0
3,155,365	-		GFF3089	0.33	-1.3
3,155,365	-		GFF3089	0.33	-0.2
3,155,370	+		GFF3089	0.34	-0.5
3,155,380	+		GFF3089	0.36	+0.3
3,155,385	+		GFF3089	0.37	+0.4
3,155,385	+		GFF3089	0.37	-0.6
3,155,385	+		GFF3089	0.37	+0.0
3,155,385	+		GFF3089	0.37	-1.3
3,155,385	+		GFF3089	0.37	-0.8
3,155,385	+		GFF3089	0.37	-0.2
3,155,385	+		GFF3089	0.37	-0.6
3,155,385	+		GFF3089	0.37	-1.0
3,155,385	+		GFF3089	0.37	-1.0
3,155,385	+		GFF3089	0.37	+0.3
3,155,385	+		GFF3089	0.37	-0.8
3,155,385	+		GFF3089	0.37	+0.6
3,155,385	+		GFF3089	0.37	+0.6
3,155,385	+		GFF3089	0.37	+0.4
3,155,388	-		GFF3089	0.37	-1.6
3,155,393	-		GFF3089	0.38	+1.3
3,155,393	-		GFF3089	0.38	-0.5
3,155,393	-		GFF3089	0.38	-0.9
3,155,393	-		GFF3089	0.38	-2.1
3,155,393	-		GFF3089	0.38	+0.5
3,155,393	-		GFF3089	0.38	+0.6
3,155,403	+		GFF3089	0.40	-0.3
3,155,403	+		GFF3089	0.40	-0.0
3,155,413	+		GFF3089	0.42	-1.3
3,155,416	-		GFF3089	0.43	+0.6
3,155,421	-		GFF3089	0.44	-0.1
3,155,421	-		GFF3089	0.44	+1.2
3,155,426	-		GFF3089	0.45	-0.3
3,155,439	+		GFF3089	0.47	-0.4
3,155,439	+		GFF3089	0.47	-0.8
3,155,442	-		GFF3089	0.48	+0.1
3,155,452	-		GFF3089	0.49	-0.8
3,155,496	+		GFF3089	0.58	-1.7
3,155,496	+		GFF3089	0.58	-0.4
3,155,497	+		GFF3089	0.58	-0.8
3,155,497	+		GFF3089	0.58	+0.2
3,155,497	+		GFF3089	0.58	+1.8
3,155,497	+		GFF3089	0.58	-2.0
3,155,497	+		GFF3089	0.58	-0.5
3,155,497	+		GFF3089	0.58	+0.8
3,155,504	-		GFF3089	0.59	+0.7
3,155,504	-		GFF3089	0.59	-0.9
3,155,505	-		GFF3089	0.59	-0.9
3,155,505	-		GFF3089	0.59	-0.1
3,155,523	-		GFF3089	0.63	+0.6