Strain Fitness in Sphingobium sp. HT1-2 around GFF3086

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,149,992	+		GFF3084	0.18	+0.3
3,150,047	-		GFF3084	0.25	-2.3
3,150,047	-		GFF3084	0.25	+0.3
3,150,049	+		GFF3084	0.25	+1.1
3,150,049	+		GFF3084	0.25	+0.5
3,150,049	+		GFF3084	0.25	-0.3
3,150,057	-		GFF3084	0.26	+0.5
3,150,058	-		GFF3084	0.26	-0.5
3,150,064	+		GFF3084	0.27	+0.8
3,150,085	+		GFF3084	0.30	+0.3
3,150,085	+		GFF3084	0.30	-0.0
3,150,085	+		GFF3084	0.30	+0.3
3,150,085	+		GFF3084	0.30	+0.9
3,150,085	+		GFF3084	0.30	+0.2
3,150,085	+		GFF3084	0.30	-0.0
3,150,085	+		GFF3084	0.30	-0.8
3,150,093	-		GFF3084	0.31	-2.0
3,150,093	-		GFF3084	0.31	-0.4
3,150,093	-		GFF3084	0.31	-2.1
3,150,103	-		GFF3084	0.32	+0.7
3,150,119	+		GFF3084	0.35	-0.5
3,150,127	-		GFF3084	0.36	-0.6
3,150,132	-		GFF3084	0.36	-0.1
3,150,136	+		GFF3084	0.37	-0.4
3,150,142	+		GFF3084	0.38	+0.1
3,150,175	-		GFF3084	0.42	-0.6
3,150,180	+		GFF3084	0.43	-0.2
3,150,180	+		GFF3084	0.43	-0.8
3,150,180	+		GFF3084	0.43	-0.2
3,150,180	+		GFF3084	0.43	+1.1
3,150,180	+		GFF3084	0.43	+0.5
3,150,180	+		GFF3084	0.43	-0.1
3,150,180	+		GFF3084	0.43	+0.9
3,150,188	-		GFF3084	0.44	-1.8
3,150,188	-		GFF3084	0.44	+0.7
3,150,188	-		GFF3084	0.44	+0.1
3,150,188	-		GFF3084	0.44	+0.4
3,150,188	-		GFF3084	0.44	-1.1
3,150,188	-		GFF3084	0.44	-1.3
3,150,188	-		GFF3084	0.44	-1.4
3,150,188	-		GFF3084	0.44	+0.0
3,150,188	-		GFF3084	0.44	+0.5
3,150,188	-		GFF3084	0.44	-1.1
3,150,188	-		GFF3084	0.44	-1.4
3,150,188	-		GFF3084	0.44	-1.7
3,150,207	+		GFF3084	0.46	-0.1
3,150,224	+		GFF3084	0.49	+1.1
3,150,229	-		GFF3084	0.49	+0.8
3,150,243	-		GFF3084	0.51	-0.2
3,150,246	+		GFF3084	0.52	-1.1
3,150,269	+		GFF3084	0.55	+0.5
3,150,269	+		GFF3084	0.55	-0.6
3,150,277	-		GFF3084	0.56	+0.5
3,150,277	-		GFF3084	0.56	-1.9
3,150,282	+		GFF3084	0.56	+0.4
3,150,290	-		GFF3084	0.57	-0.1
3,150,305	+		GFF3084	0.59	+0.1
3,150,305	+		GFF3084	0.59	-1.1
3,150,348	+		GFF3084	0.65	-1.0
3,150,360	+		GFF3084	0.67	-0.1
3,150,362	+		GFF3084	0.67	+0.2
3,150,368	-		GFF3084	0.68	+1.3
3,150,376	-		GFF3084	0.69	+0.4
3,150,394	+		GFF3084	0.71	+0.2
3,150,399	+		GFF3084	0.72	-1.1
3,150,399	+		GFF3084	0.72	+0.9
3,150,404	+		GFF3084	0.73	+0.1
3,150,407	-		GFF3084	0.73	+1.8
3,150,407	-		GFF3084	0.73	-0.6
3,150,411	+		GFF3084	0.74	-0.0
3,150,411	+		GFF3084	0.74	+0.4
3,150,412	-		GFF3084	0.74	-0.5
3,150,419	-		GFF3084	0.75	-0.8
3,150,419	-		GFF3084	0.75	-0.4
3,150,427	+		GFF3084	0.76	+0.2
3,150,427	+		GFF3084	0.76	+0.7
3,150,444	-		GFF3084	0.78	+0.1
3,150,444	-		GFF3084	0.78	+0.2
3,150,479	-		GFF3084	0.83	-1.3
3,150,507	+		GFF3084	0.86	-1.7
3,150,512	+		GFF3084	0.87	-1.3
3,150,586	-				-0.3
3,150,664	+				+0.3
3,150,664	+				+0.0
3,150,670	+				-0.6
3,150,672	-				+0.1
3,150,672	-				+0.2
3,150,672	-				-1.6
3,150,683	+				-1.0
3,150,683	+				+0.5
3,150,683	+				-0.4
3,150,691	-				-0.9
3,150,691	-				-0.6
3,150,691	-				-0.3
3,150,691	-				+1.3
3,150,691	-				+1.2
3,150,731	+				-0.6
3,150,731	+				-0.4
3,150,750	-				+0.5
3,150,766	+				+0.4
3,150,768	-				-0.4
3,150,769	-				-0.5
3,150,770	+				+0.8
3,150,770	+				-0.3
3,150,770	+				-0.5
3,150,770	+				-0.6
3,150,770	+				-0.6
3,150,770	+				-0.6
3,150,778	-				+0.2
3,150,778	-				-0.2
3,150,778	-				-1.6
3,150,778	-				-0.9
3,150,778	-				-0.4
3,150,780	-				-0.3
3,150,788	+				-0.3
3,150,793	+		GFF3085	0.10	-1.4
3,150,796	-		GFF3085	0.12	+0.1
3,150,796	-		GFF3085	0.12	-0.9
3,150,796	-		GFF3085	0.12	-1.1
3,150,802	+		GFF3085	0.14	-1.0
3,150,807	+		GFF3085	0.17	-0.1
3,150,807	+		GFF3085	0.17	+0.3
3,150,807	+		GFF3085	0.17	+0.3
3,150,807	+		GFF3085	0.17	-0.2
3,150,807	+		GFF3085	0.17	-1.1
3,150,807	+		GFF3085	0.17	+0.9
3,150,807	+		GFF3085	0.17	-0.5
3,150,807	+		GFF3085	0.17	-0.2
3,150,815	-		GFF3085	0.20	-0.9
3,150,815	-		GFF3085	0.20	-0.6
3,150,815	-		GFF3085	0.20	-1.1
3,150,815	-		GFF3085	0.20	+0.3
3,150,815	-		GFF3085	0.20	+0.8
3,150,815	-		GFF3085	0.20	-0.7
3,150,815	-		GFF3085	0.20	+1.7
3,150,815	-		GFF3085	0.20	-0.3
3,150,820	-		GFF3085	0.23	+0.4
3,150,849	-		GFF3085	0.36	+0.2
3,150,867	+		GFF3085	0.44	+0.1
3,150,880	+		GFF3085	0.50	-0.8
3,150,880	+		GFF3085	0.50	-1.4
3,150,883	-		GFF3085	0.51	-1.8
3,150,896	+		GFF3085	0.57	+0.2
3,150,971	-				-0.4
3,150,975	-				-0.4
3,150,985	+				+0.8
3,150,985	+				+0.4
3,150,985	+				+0.4
3,150,985	+				-0.3
3,150,993	-				-0.5
3,150,993	-				-0.6
3,151,009	+				-0.3
3,151,020	+				-1.9
3,151,026	-				-0.7
3,151,046	+				+0.2
3,151,047	+				-0.3
3,151,047	+				-1.1
3,151,112	+		GFF3086	0.14	-0.2
3,151,135	+		GFF3086	0.16	-0.3
3,151,144	-		GFF3086	0.17	+0.6
3,151,144	-		GFF3086	0.17	-0.6
3,151,176	-		GFF3086	0.21	+0.5
3,151,199	+		GFF3086	0.23	-0.8
3,151,199	+		GFF3086	0.23	+0.5
3,151,199	+		GFF3086	0.23	+0.1
3,151,209	+		GFF3086	0.24	-1.1
3,151,217	-		GFF3086	0.25	+0.2
3,151,257	+		GFF3086	0.30	+1.8
3,151,258	+		GFF3086	0.30	+0.5
3,151,258	+		GFF3086	0.30	-0.3
3,151,258	+		GFF3086	0.30	+1.2
3,151,258	+		GFF3086	0.30	-1.1
3,151,263	+		GFF3086	0.30	+0.0
3,151,264	-		GFF3086	0.31	-2.3
3,151,266	-		GFF3086	0.31	-1.3
3,151,266	-		GFF3086	0.31	+0.1
3,151,266	-		GFF3086	0.31	-0.5
3,151,266	-		GFF3086	0.31	-0.1
3,151,266	-		GFF3086	0.31	-0.5
3,151,266	-		GFF3086	0.31	+0.2
3,151,273	-		GFF3086	0.32	+0.1
3,151,281	+		GFF3086	0.32	-0.4
3,151,288	+		GFF3086	0.33	+0.6
3,151,303	-		GFF3086	0.35	+0.0
3,151,308	-		GFF3086	0.35	+0.7
3,151,309	-		GFF3086	0.36	+0.1
3,151,326	+		GFF3086	0.37	-1.8
3,151,326	+		GFF3086	0.37	-0.4
3,151,329	-		GFF3086	0.38	+0.2
3,151,331	+		GFF3086	0.38	+0.3
3,151,331	+		GFF3086	0.38	-0.2
3,151,331	+		GFF3086	0.38	+0.8
3,151,331	+		GFF3086	0.38	+0.8
3,151,331	+		GFF3086	0.38	-1.8
3,151,331	+		GFF3086	0.38	-0.2
3,151,331	+		GFF3086	0.38	-0.2
3,151,331	+		GFF3086	0.38	+0.3
3,151,331	+		GFF3086	0.38	+0.7
3,151,331	+		GFF3086	0.38	-0.1
3,151,331	+		GFF3086	0.38	-1.1
3,151,331	+		GFF3086	0.38	+0.3
3,151,331	+		GFF3086	0.38	-1.1
3,151,331	+		GFF3086	0.38	-0.3
3,151,331	+		GFF3086	0.38	-2.1
3,151,334	-		GFF3086	0.38	-1.4
3,151,334	-		GFF3086	0.38	-0.8
3,151,339	-		GFF3086	0.39	+0.2
3,151,339	-		GFF3086	0.39	-1.6
3,151,339	-		GFF3086	0.39	-1.6
3,151,339	-		GFF3086	0.39	-0.4
3,151,339	-		GFF3086	0.39	+0.3
3,151,339	-		GFF3086	0.39	+1.0
3,151,346	+		GFF3086	0.40	+1.4
3,151,356	-		GFF3086	0.41	+1.1
3,151,434	+		GFF3086	0.49	+0.2
3,151,440	-		GFF3086	0.50	-1.1
3,151,442	-		GFF3086	0.50	-2.1
3,151,442	-		GFF3086	0.50	-0.6
3,151,444	+		GFF3086	0.50	-0.5
3,151,447	-		GFF3086	0.51	-0.7
3,151,448	+		GFF3086	0.51	+0.6
3,151,452	-		GFF3086	0.51	-0.2
3,151,452	-		GFF3086	0.51	+0.4
3,151,454	+		GFF3086	0.52	-1.1
3,151,454	+		GFF3086	0.52	-0.3
3,151,462	-		GFF3086	0.52	-0.2
3,151,472	+		GFF3086	0.54	-1.3
3,151,480	-		GFF3086	0.54	-0.9
3,151,481	+		GFF3086	0.55	-0.6
3,151,486	+		GFF3086	0.55	-1.7
3,151,494	-		GFF3086	0.56	+0.1
3,151,525	+		GFF3086	0.59	+0.2
3,151,527	+		GFF3086	0.60	-0.3
3,151,543	+		GFF3086	0.61	-0.0
3,151,551	+		GFF3086	0.62	+0.1
3,151,575	+		GFF3086	0.65	+0.2
3,151,578	-		GFF3086	0.65	-0.8
3,151,583	-		GFF3086	0.66	-0.7
3,151,609	+		GFF3086	0.69	-0.4
3,151,612	-		GFF3086	0.69	-0.6
3,151,617	-		GFF3086	0.70	+0.9
3,151,617	-		GFF3086	0.70	+0.8
3,151,617	-		GFF3086	0.70	+0.2
3,151,617	-		GFF3086	0.70	+0.4
3,151,618	+		GFF3086	0.70	+1.3
3,151,625	+		GFF3086	0.71	+0.6
3,151,633	-		GFF3086	0.71	-2.3
3,151,635	+		GFF3086	0.72	-1.3
3,151,666	-		GFF3086	0.75	-0.2
3,151,698	-		GFF3086	0.79	+0.3
3,151,712	+		GFF3086	0.80	+1.1
3,151,760	+		GFF3086	0.85	-1.4
3,151,760	+		GFF3086	0.85	+0.4
3,151,760	+		GFF3086	0.85	+1.1
3,151,760	+		GFF3086	0.85	-0.6
3,151,768	-		GFF3086	0.86	+0.1
3,151,792	+		GFF3086	0.89	-0.4
3,151,793	+		GFF3086	0.89	-0.6
3,151,793	-		GFF3086	0.89	+0.2
3,151,805	+				-0.3
3,151,813	-				+0.4
3,151,815	+				+1.8
3,151,815	+				+0.1
3,151,815	+				-0.1
3,151,815	+				-0.8
3,151,815	+				+0.4
3,151,823	-				-0.2
3,151,823	-				+0.2
3,151,826	+				+0.0
3,151,828	-				-0.8
3,151,828	-				-0.4
3,151,833	-				-1.5
3,151,834	-				-0.2
3,151,834	-				+0.2
3,151,884	+				+1.0
3,151,887	-				+1.2
3,151,894	-				-0.8
3,151,897	-				-0.9
3,151,900	+				+0.1
3,151,900	+				-1.3
3,151,900	+				+0.2
3,151,903	-				-1.1
3,151,905	+				+0.2
3,151,908	-				+0.8
3,151,908	-				-0.4
3,151,908	-				-0.3
3,151,908	-				-0.2
3,151,910	+				+1.3
3,151,910	+				-0.9
3,151,910	+				+0.3
3,151,913	-				-0.3
3,151,915	+				-0.7
3,151,918	-				+0.7
3,151,923	-				-2.2
3,151,927	+				-0.4
3,151,929	+				-1.7
3,151,939	-				+0.3
3,151,948	+				+0.2
3,151,956	-				+0.4
3,151,956	-				+1.6
3,151,956	-				-1.8
3,151,971	-				-1.3
3,151,980	+				-1.4
3,151,988	-				-2.6
3,152,011	-				-0.2
3,152,013	-				-0.8
3,152,025	-				+0.3
3,152,081	+				-0.5
3,152,081	+				-0.2
3,152,105	+				+0.5
3,152,110	-				+0.2
3,152,171	+				-1.2
3,152,189	+				-0.3
3,152,191	+				-1.7
3,152,191	-				-0.8
3,152,191	-				+0.5
3,152,191	-				-0.0
3,152,199	-				-0.9
3,152,234	-				-1.7
3,152,289	+				-0.4
3,152,297	-				-0.3
3,152,300	+				-0.3
3,152,308	-				-0.2
3,152,308	-				+0.2
3,152,338	+				+0.3
3,152,376	+				+0.6
3,152,385	-				-2.2
3,152,392	-				-1.9
3,152,392	-				+0.9
3,152,402	-				-0.9
3,152,420	-				-1.3
3,152,460	-				-2.3
3,152,474	-				-0.1
3,152,493	-				+0.6
3,152,558	+				+0.5
3,152,558	+				-0.6
3,152,563	+				+1.3
3,152,575	+				+1.3
3,152,576	+				-0.6
3,152,584	+				-1.1
3,152,586	+				+0.4
3,152,587	-				-0.6
3,152,592	-				+0.1
3,152,599	-				-1.5
3,152,606	+				-0.0
3,152,613	-				-0.6
3,152,615	+				-2.0
3,152,620	+				+0.7
3,152,620	+				-0.1
3,152,620	+				-0.2
3,152,620	+				-1.4
3,152,623	-				-3.6
3,152,628	-				-1.7
3,152,642	+				-0.1
3,152,656	-				-1.1
3,152,658	-				+0.5
3,152,671	+				-0.4
3,152,671	+				-1.1
3,152,709	-				+0.1
3,152,748	-				+0.5
3,152,748	-				+0.7
3,152,759	+				-0.5
3,152,759	+				+0.6
3,152,759	+				+0.4
3,152,759	+				+0.2
3,152,764	+				+0.1
3,152,767	-				-2.7
3,152,767	-				-2.4
3,152,767	-				-0.2
3,152,767	-				+0.7
3,152,767	-				-1.3
3,152,778	-				-1.8
3,152,778	-				+0.4
3,152,802	+				+0.3
3,152,821	+				+1.0
3,152,829	-				-0.4
3,152,829	-				+0.1
3,152,839	-				-0.5
3,152,841	+				+0.0
3,152,847	-				-0.4
3,152,849	-				-0.7
3,152,849	-				+0.4
3,152,887	-				-1.1