Strain Fitness in Sphingobium sp. HT1-2 around GFF3076

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,144,287	-		GFF3074	0.59	-1.0
3,144,289	+		GFF3074	0.59	-0.0
3,144,289	+		GFF3074	0.59	-0.8
3,144,297	-		GFF3074	0.60	-1.0
3,144,297	-		GFF3074	0.60	-0.0
3,144,297	-		GFF3074	0.60	-0.3
3,144,297	-		GFF3074	0.60	+0.9
3,144,297	-		GFF3074	0.60	-1.4
3,144,297	-		GFF3074	0.60	-1.8
3,144,299	-		GFF3074	0.60	-0.3
3,144,338	+		GFF3074	0.63	-0.2
3,144,338	+		GFF3074	0.63	-1.7
3,144,338	+		GFF3074	0.63	-1.1
3,144,346	-		GFF3074	0.64	-1.3
3,144,346	-		GFF3074	0.64	-0.3
3,144,346	-		GFF3074	0.64	-2.2
3,144,346	-		GFF3074	0.64	+0.3
3,144,346	-		GFF3074	0.64	-0.3
3,144,362	+		GFF3074	0.65	+0.7
3,144,365	-		GFF3074	0.65	+0.3
3,144,370	-		GFF3074	0.65	-0.2
3,144,370	-		GFF3074	0.65	+0.9
3,144,371	-		GFF3074	0.65	-0.8
3,144,391	+		GFF3074	0.67	+0.6
3,144,391	+		GFF3074	0.67	+0.3
3,144,391	+		GFF3074	0.67	-0.4
3,144,399	-		GFF3074	0.67	-0.1
3,144,399	-		GFF3074	0.67	-0.6
3,144,433	-		GFF3074	0.70	+0.7
3,144,464	-		GFF3074	0.72	+0.4
3,144,464	-		GFF3074	0.72	+0.5
3,144,491	-		GFF3074	0.74	-0.4
3,144,564	+		GFF3074	0.80	-1.5
3,144,572	+		GFF3074	0.80	+0.2
3,144,572	-		GFF3074	0.80	+0.4
3,144,572	-		GFF3074	0.80	-0.2
3,144,572	-		GFF3074	0.80	-2.3
3,144,572	-		GFF3074	0.80	-1.5
3,144,572	-		GFF3074	0.80	+0.0
3,144,572	-		GFF3074	0.80	-2.1
3,144,580	-		GFF3074	0.81	-1.0
3,144,587	+		GFF3074	0.81	+0.7
3,144,587	+		GFF3074	0.81	+0.2
3,144,587	+		GFF3074	0.81	-1.1
3,144,592	+		GFF3074	0.82	+0.6
3,144,595	-		GFF3074	0.82	-2.5
3,144,596	-		GFF3074	0.82	-1.1
3,144,626	-		GFF3074	0.84	+0.3
3,144,653	+		GFF3074	0.86	-0.3
3,144,655	-		GFF3074	0.86	-1.3
3,144,655	-		GFF3074	0.86	+1.5
3,144,657	+		GFF3074	0.86	-1.3
3,144,660	-		GFF3074	0.87	-0.5
3,144,677	+		GFF3074	0.88	-0.9
3,144,679	-		GFF3074	0.88	-0.5
3,144,700	-		GFF3074	0.90	+0.7
3,144,743	-				-2.1
3,144,744	-				+0.2
3,144,760	-				+0.5
3,144,801	+				-2.3
3,144,801	+				-0.7
3,144,809	-				+0.4
3,144,809	-				+0.2
3,144,842	+				+1.4
3,144,842	+				+0.9
3,144,850	-				-0.1
3,144,860	+				+0.4
3,144,860	+				+0.6
3,144,860	+				+0.1
3,144,860	+				-0.3
3,144,868	-				-0.6
3,144,868	-				-0.2
3,144,868	-				+0.1
3,144,868	-				-0.1
3,144,868	-				-0.2
3,144,868	-				+0.4
3,144,868	-				-0.0
3,144,868	-				+0.1
3,144,868	-				+0.4
3,144,868	-				-0.2
3,144,875	-				+0.1
3,144,897	-		GFF3075	0.16	-0.6
3,144,903	+		GFF3075	0.17	-0.9
3,144,908	+		GFF3075	0.18	-0.0
3,144,915	+		GFF3075	0.20	-2.0
3,144,915	+		GFF3075	0.20	-0.8
3,144,946	+		GFF3075	0.28	-0.4
3,144,965	+		GFF3075	0.33	-2.6
3,144,965	+		GFF3075	0.33	+0.2
3,144,966	-		GFF3075	0.33	-0.4
3,145,001	+		GFF3075	0.42	-2.0
3,145,001	+		GFF3075	0.42	+1.2
3,145,001	+		GFF3075	0.42	+0.7
3,145,006	+		GFF3075	0.44	+1.5
3,145,009	-		GFF3075	0.44	-0.2
3,145,009	-		GFF3075	0.44	-0.6
3,145,009	-		GFF3075	0.44	-1.1
3,145,009	-		GFF3075	0.44	-0.5
3,145,068	+		GFF3075	0.60	-0.2
3,145,119	+		GFF3075	0.73	-0.7
3,145,119	+		GFF3075	0.73	+0.5
3,145,127	-		GFF3075	0.75	+1.1
3,145,127	-		GFF3075	0.75	+1.7
3,145,127	-		GFF3075	0.75	-1.8
3,145,158	+		GFF3075	0.83	+0.5
3,145,165	+		GFF3075	0.85	-0.7
3,145,170	+		GFF3075	0.86	-0.4
3,145,170	+		GFF3075	0.86	-0.1
3,145,170	+		GFF3075	0.86	+0.3
3,145,173	-		GFF3075	0.87	-0.1
3,145,173	-		GFF3075	0.87	+1.4
3,145,178	-		GFF3075	0.88	-0.9
3,145,202	-				+1.1
3,145,234	-				-1.3
3,145,267	+				-0.0
3,145,317	+				-0.9
3,145,317	+				-0.3
3,145,322	+				-1.5
3,145,322	+				+1.6
3,145,322	+				+0.6
3,145,322	+				-0.7
3,145,322	+				-2.1
3,145,322	+				+1.1
3,145,322	+				-1.4
3,145,322	+				-1.5
3,145,322	+				-0.6
3,145,322	+				-2.3
3,145,325	-				-1.8
3,145,330	-				-1.3
3,145,330	-				-0.0
3,145,330	-				+0.7
3,145,330	-				+0.1
3,145,330	-				+0.8
3,145,359	+				+0.5
3,145,361	+				-0.2
3,145,361	+				-0.6
3,145,367	-		GFF3076	0.10	+1.0
3,145,369	-		GFF3076	0.10	-0.1
3,145,390	+		GFF3076	0.13	-2.2
3,145,398	+		GFF3076	0.13	+1.8
3,145,398	+		GFF3076	0.13	-1.0
3,145,398	-		GFF3076	0.13	+0.1
3,145,403	-		GFF3076	0.14	+0.8
3,145,405	-		GFF3076	0.14	+1.2
3,145,406	-		GFF3076	0.14	-0.4
3,145,406	-		GFF3076	0.14	+0.5
3,145,406	-		GFF3076	0.14	+0.4
3,145,406	-		GFF3076	0.14	-0.3
3,145,408	+		GFF3076	0.15	+0.9
3,145,408	+		GFF3076	0.15	-0.8
3,145,411	-		GFF3076	0.15	-0.6
3,145,411	-		GFF3076	0.15	+0.0
3,145,411	-		GFF3076	0.15	-0.5
3,145,411	-		GFF3076	0.15	+0.4
3,145,416	-		GFF3076	0.15	-0.8
3,145,416	-		GFF3076	0.15	+0.0
3,145,416	-		GFF3076	0.15	-0.6
3,145,429	+		GFF3076	0.17	-2.0
3,145,429	+		GFF3076	0.17	+0.9
3,145,437	-		GFF3076	0.18	-1.2
3,145,443	+		GFF3076	0.18	-1.0
3,145,446	-		GFF3076	0.18	-1.6
3,145,446	-		GFF3076	0.18	+0.6
3,145,449	-		GFF3076	0.19	-0.6
3,145,475	+		GFF3076	0.21	-2.3
3,145,483	+		GFF3076	0.22	-1.0
3,145,483	+		GFF3076	0.22	+0.1
3,145,493	-		GFF3076	0.23	+0.7
3,145,502	+		GFF3076	0.24	-1.3
3,145,510	+		GFF3076	0.25	-1.3
3,145,510	+		GFF3076	0.25	+0.1
3,145,510	+		GFF3076	0.25	+0.1
3,145,518	-		GFF3076	0.26	+0.3
3,145,518	-		GFF3076	0.26	-0.4
3,145,520	+		GFF3076	0.26	-0.1
3,145,549	-		GFF3076	0.29	-0.3
3,145,555	+		GFF3076	0.30	+0.5
3,145,555	+		GFF3076	0.30	-0.3
3,145,555	+		GFF3076	0.30	+0.8
3,145,569	-		GFF3076	0.31	-0.7
3,145,574	-		GFF3076	0.32	-0.4
3,145,574	-		GFF3076	0.32	+0.5
3,145,590	+		GFF3076	0.33	+0.7
3,145,590	+		GFF3076	0.33	-1.1
3,145,590	+		GFF3076	0.33	-0.4
3,145,595	+		GFF3076	0.34	+0.7
3,145,598	+		GFF3076	0.34	+0.3
3,145,603	-		GFF3076	0.35	+1.3
3,145,617	+		GFF3076	0.36	+0.3
3,145,622	-		GFF3076	0.37	-0.4
3,145,651	+		GFF3076	0.40	-0.4
3,145,651	+		GFF3076	0.40	+0.8
3,145,651	+		GFF3076	0.40	-1.2
3,145,659	-		GFF3076	0.41	-1.4
3,145,659	-		GFF3076	0.41	-0.5
3,145,661	-		GFF3076	0.41	-1.6
3,145,661	-		GFF3076	0.41	-0.0
3,145,675	+		GFF3076	0.42	-0.3
3,145,689	-		GFF3076	0.44	+0.9
3,145,704	+		GFF3076	0.45	-1.3
3,145,779	+		GFF3076	0.53	+1.2
3,145,794	+		GFF3076	0.55	-0.6
3,145,794	+		GFF3076	0.55	+0.5
3,145,797	+		GFF3076	0.55	+0.3
3,145,802	-		GFF3076	0.55	+0.1
3,145,802	-		GFF3076	0.55	-1.2
3,145,802	-		GFF3076	0.55	+0.2
3,145,802	-		GFF3076	0.55	-0.4
3,145,815	+		GFF3076	0.57	-1.5
3,145,815	+		GFF3076	0.57	+0.3
3,145,820	+		GFF3076	0.57	-1.0
3,145,820	+		GFF3076	0.57	-1.6
3,145,823	-		GFF3076	0.58	-1.1
3,145,828	-		GFF3076	0.58	+1.1
3,145,828	-		GFF3076	0.58	-0.1
3,145,882	-		GFF3076	0.64	-1.4
3,145,912	+		GFF3076	0.67	-2.2
3,145,919	+		GFF3076	0.68	-0.9
3,145,928	-		GFF3076	0.69	-1.3
3,145,932	+		GFF3076	0.69	-0.5
3,145,932	+		GFF3076	0.69	-0.3
3,145,937	+		GFF3076	0.69	+0.4
3,145,937	+		GFF3076	0.69	-1.9
3,145,945	-		GFF3076	0.70	+0.5
3,145,945	-		GFF3076	0.70	+0.9
3,145,945	-		GFF3076	0.70	-1.2
3,145,952	+		GFF3076	0.71	+0.7
3,145,952	+		GFF3076	0.71	+0.9
3,145,955	-		GFF3076	0.71	-0.4
3,145,960	-		GFF3076	0.72	-0.3
3,145,992	+		GFF3076	0.75	-1.9
3,145,992	+		GFF3076	0.75	-1.3
3,145,992	+		GFF3076	0.75	-0.9
3,145,995	-		GFF3076	0.75	+0.2
3,145,995	-		GFF3076	0.75	+1.6
3,145,995	-		GFF3076	0.75	+0.6
3,145,997	+		GFF3076	0.76	-0.2
3,146,000	-		GFF3076	0.76	-0.6
3,146,000	-		GFF3076	0.76	-0.5
3,146,000	-		GFF3076	0.76	+0.2
3,146,005	-		GFF3076	0.77	+0.1
3,146,070	+		GFF3076	0.83	-0.7
3,146,072	+		GFF3076	0.83	-1.5
3,146,072	+		GFF3076	0.83	-2.4
3,146,080	-		GFF3076	0.84	-0.7
3,146,085	-		GFF3076	0.85	+0.1
3,146,089	+		GFF3076	0.85	-0.4
3,146,089	+		GFF3076	0.85	+0.0
3,146,097	-		GFF3076	0.86	-1.9
3,146,097	-		GFF3076	0.86	-0.2
3,146,125	-		GFF3076	0.89	-0.1
3,146,158	-				-2.4
3,146,162	+				-1.6
3,146,167	+				+1.0
3,146,200	+				+0.1
3,146,200	+				-0.9
3,146,208	-				+0.1
3,146,303	-				+0.6
3,146,316	-				+0.2
3,146,350	+				-1.3
3,146,373	+				-0.1
3,146,376	-				+0.7
3,146,385	+		GFF3077	0.11	-0.0
3,146,451	+		GFF3077	0.25	-1.1
3,146,451	+		GFF3077	0.25	-1.0
3,146,464	-		GFF3077	0.27	+0.8
3,146,467	+		GFF3077	0.28	-0.5
3,146,483	-		GFF3077	0.31	+0.8
3,146,485	+		GFF3077	0.32	+0.1
3,146,485	-		GFF3077	0.32	+0.3
3,146,493	-		GFF3077	0.34	+0.1
3,146,510	-		GFF3077	0.37	-0.1
3,146,529	+		GFF3077	0.41	-2.4
3,146,530	+		GFF3077	0.41	-0.2
3,146,544	-		GFF3077	0.44	+0.0
3,146,601	+		GFF3077	0.56	+0.3
3,146,609	-		GFF3077	0.58	+0.2
3,146,625	+		GFF3077	0.61	-1.2
3,146,625	+		GFF3077	0.61	-0.0
3,146,633	-		GFF3077	0.63	-0.0
3,146,695	+		GFF3077	0.76	-1.0
3,146,695	+		GFF3077	0.76	-0.1
3,146,695	+		GFF3077	0.76	-0.8
3,146,695	+		GFF3077	0.76	-2.2
3,146,695	+		GFF3077	0.76	-0.7
3,146,695	+		GFF3077	0.76	-1.3
3,146,695	+		GFF3077	0.76	-2.4
3,146,695	+		GFF3077	0.76	+2.1
3,146,695	+		GFF3077	0.76	-0.3
3,146,695	+		GFF3077	0.76	-1.1
3,146,695	+		GFF3077	0.76	+0.1
3,146,695	+		GFF3077	0.76	+0.6
3,146,695	+		GFF3077	0.76	-0.7
3,146,703	-		GFF3077	0.78	-0.9
3,146,703	-		GFF3077	0.78	-2.4
3,146,703	-		GFF3077	0.78	+0.4
3,146,703	-		GFF3077	0.78	-0.1
3,146,703	-		GFF3077	0.78	-1.3
3,146,703	-		GFF3077	0.78	+0.4
3,146,703	-		GFF3077	0.78	+1.5
3,146,703	-		GFF3077	0.78	-0.9
3,146,703	-		GFF3077	0.78	+0.7
3,146,703	-		GFF3077	0.78	-1.1
3,146,703	-		GFF3077	0.78	-1.7
3,146,711	-		GFF3077	0.80	+0.1
3,146,768	+				-1.3
3,146,768	+				-0.5
3,146,771	-				-0.7
3,146,785	+				+0.4
3,146,793	-				+1.1
3,146,795	+				+0.7
3,146,795	+				+0.8
3,146,798	-				+1.1
3,146,801	+				-0.0
3,146,804	-				+1.2
3,146,809	-				-0.1
3,146,809	-				-0.5
3,146,826	-				-0.9
3,146,841	+				-0.7
3,146,842	+				+0.0
3,146,842	+				-0.2
3,146,850	-				+0.1
3,146,850	-				-1.0
3,146,859	+				-0.0
3,146,891	+				-0.8
3,146,891	-				-0.6
3,146,891	-				-1.3
3,146,903	+				-1.0
3,146,908	+				-0.4
3,146,908	+				-1.9
3,146,908	+				-1.0
3,146,908	+				-0.1
3,146,908	+				-0.1
3,146,908	+				-0.5
3,146,908	+				+0.6
3,146,911	-				+0.2
3,146,916	-				-0.7
3,146,916	-				-1.5
3,146,916	-				+1.1
3,146,916	-				-0.5
3,146,932	-		GFF3078	0.10	+0.7
3,146,951	-		GFF3078	0.12	-0.1
3,146,956	-		GFF3078	0.13	-0.5
3,146,984	+		GFF3078	0.15	-0.2
3,146,984	+		GFF3078	0.15	-0.2
3,146,984	+		GFF3078	0.15	-1.9
3,146,992	-		GFF3078	0.16	-0.9
3,146,992	-		GFF3078	0.16	-1.3
3,146,992	-		GFF3078	0.16	-0.2
3,146,992	-		GFF3078	0.16	+0.6
3,146,992	-		GFF3078	0.16	+1.6
3,147,001	+		GFF3078	0.17	+0.2
3,147,001	+		GFF3078	0.17	+1.0
3,147,009	-		GFF3078	0.18	+0.7
3,147,016	+		GFF3078	0.19	-0.5
3,147,017	+		GFF3078	0.19	+0.7
3,147,034	+		GFF3078	0.20	+0.9
3,147,042	-		GFF3078	0.21	+1.2
3,147,049	+		GFF3078	0.22	+0.5
3,147,049	+		GFF3078	0.22	-0.5
3,147,053	+		GFF3078	0.22	-0.4
3,147,068	+		GFF3078	0.24	+2.0
3,147,074	+		GFF3078	0.24	+0.1
3,147,074	+		GFF3078	0.24	+1.7
3,147,074	+		GFF3078	0.24	-1.4
3,147,074	+		GFF3078	0.24	+1.3
3,147,074	+		GFF3078	0.24	-1.7
3,147,074	+		GFF3078	0.24	-1.6
3,147,074	+		GFF3078	0.24	+0.5
3,147,074	+		GFF3078	0.24	+1.3
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3,147,082	-		GFF3078	0.25	-0.0
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3,147,082	-		GFF3078	0.25	+0.5
3,147,082	-		GFF3078	0.25	+0.3
3,147,082	-		GFF3078	0.25	-1.2
3,147,118	+		GFF3078	0.29	+0.7
3,147,118	+		GFF3078	0.29	+1.0
3,147,126	-		GFF3078	0.29	+0.3
3,147,145	+		GFF3078	0.31	+0.9
3,147,147	+		GFF3078	0.31	+0.3
3,147,153	-		GFF3078	0.32	-1.7
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3,147,155	-		GFF3078	0.32	-0.7
3,147,158	-		GFF3078	0.33	-0.9
3,147,178	+		GFF3078	0.35	-1.4
3,147,178	+		GFF3078	0.35	+0.0
3,147,178	+		GFF3078	0.35	+0.3
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3,147,186	-		GFF3078	0.35	-1.6
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3,147,186	-		GFF3078	0.35	-1.3
3,147,186	-		GFF3078	0.35	+0.0
3,147,188	+		GFF3078	0.35	-2.5
3,147,202	-		GFF3078	0.37	-0.2
3,147,204	+		GFF3078	0.37	-1.4
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3,147,212	-		GFF3078	0.38	-1.1
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3,147,229	+		GFF3078	0.40	-0.3
3,147,229	+		GFF3078	0.40	-1.5
3,147,229	+		GFF3078	0.40	+0.2
3,147,229	+		GFF3078	0.40	+1.3
3,147,229	+		GFF3078	0.40	-0.3