Strain Fitness in Sphingobium sp. HT1-2 around GFF3073

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,141,821	-				-3.2
3,141,852	+				-1.6
3,141,852	-				+0.8
3,141,864	+				-1.3
3,141,875	-				+0.2
3,141,880	-				+0.2
3,142,582	-				-1.3
3,142,582	-				-0.2
3,142,582	-				+0.5
3,142,582	-				+0.4
3,142,582	-				-0.4
3,142,584	+				-1.7
3,142,584	+				+0.4
3,142,592	-		GFF3072	0.12	+0.8
3,142,596	+		GFF3072	0.14	+0.2
3,142,615	+		GFF3072	0.21	-0.2
3,142,621	-		GFF3072	0.24	-0.4
3,142,621	-		GFF3072	0.24	+0.3
3,142,621	-		GFF3072	0.24	-1.0
3,142,621	-		GFF3072	0.24	+0.2
3,142,623	+		GFF3072	0.24	-0.2
3,142,634	+		GFF3072	0.29	-1.4
3,142,634	+		GFF3072	0.29	-1.4
3,142,634	+		GFF3072	0.29	+0.6
3,142,642	-		GFF3072	0.32	-0.4
3,142,652	+		GFF3072	0.36	-0.4
3,142,652	+		GFF3072	0.36	-0.9
3,142,652	+		GFF3072	0.36	-0.7
3,142,666	+		GFF3072	0.41	+0.7
3,142,675	-		GFF3072	0.45	+0.8
3,142,679	-		GFF3072	0.46	-1.5
3,142,732	-		GFF3072	0.67	-2.0
3,142,746	-		GFF3072	0.73	+0.0
3,142,751	-		GFF3072	0.75	-0.6
3,142,772	+		GFF3072	0.83	-0.4
3,142,784	-		GFF3072	0.87	+0.5
3,142,819	+				-0.7
3,142,856	-				-0.7
3,142,872	+				-1.1
3,142,873	+				-0.1
3,142,881	-		GFF3073	0.10	+0.3
3,142,892	+		GFF3073	0.12	-0.5
3,142,892	+		GFF3073	0.12	-0.7
3,142,892	+		GFF3073	0.12	-1.7
3,142,892	+		GFF3073	0.12	-0.0
3,142,900	-		GFF3073	0.13	-0.9
3,142,900	-		GFF3073	0.13	-2.6
3,142,900	-		GFF3073	0.13	-0.5
3,142,900	-		GFF3073	0.13	-0.1
3,142,900	-		GFF3073	0.13	+0.1
3,142,900	-		GFF3073	0.13	+0.5
3,142,900	-		GFF3073	0.13	+1.3
3,142,900	-		GFF3073	0.13	-0.2
3,142,900	-		GFF3073	0.13	+0.0
3,142,900	-		GFF3073	0.13	+1.0
3,142,900	-		GFF3073	0.13	+0.1
3,142,900	-		GFF3073	0.13	-0.4
3,142,902	+		GFF3073	0.14	-2.4
3,142,905	-		GFF3073	0.14	-1.0
3,142,910	-		GFF3073	0.15	-3.1
3,142,934	-		GFF3073	0.18	+0.3
3,142,935	+		GFF3073	0.19	-0.2
3,142,940	+		GFF3073	0.19	-0.1
3,142,969	-		GFF3073	0.24	+1.5
3,142,969	-		GFF3073	0.24	-0.4
3,142,996	+		GFF3073	0.28	-1.9
3,143,022	-		GFF3073	0.32	+0.5
3,143,024	+		GFF3073	0.32	-0.9
3,143,026	+		GFF3073	0.32	-1.5
3,143,032	+		GFF3073	0.33	+1.0
3,143,038	+		GFF3073	0.34	+0.3
3,143,040	-		GFF3073	0.35	+0.6
3,143,062	-		GFF3073	0.38	+1.2
3,143,062	-		GFF3073	0.38	+0.5
3,143,064	+		GFF3073	0.38	+0.3
3,143,064	+		GFF3073	0.38	-1.2
3,143,064	+		GFF3073	0.38	-1.0
3,143,070	-		GFF3073	0.39	-0.5
3,143,099	+		GFF3073	0.43	+0.3
3,143,109	+		GFF3073	0.45	+0.6
3,143,109	-		GFF3073	0.45	+0.5
3,143,111	+		GFF3073	0.45	-0.6
3,143,111	+		GFF3073	0.45	-0.1
3,143,111	+		GFF3073	0.45	-0.5
3,143,111	+		GFF3073	0.45	+1.1
3,143,111	+		GFF3073	0.45	+0.6
3,143,119	-		GFF3073	0.47	-0.7
3,143,119	-		GFF3073	0.47	+0.7
3,143,119	-		GFF3073	0.47	-0.4
3,143,119	-		GFF3073	0.47	-1.7
3,143,157	+		GFF3073	0.52	-1.0
3,143,183	+		GFF3073	0.56	-1.6
3,143,192	+		GFF3073	0.58	+0.3
3,143,197	+		GFF3073	0.58	+0.1
3,143,200	-		GFF3073	0.59	+1.8
3,143,202	+		GFF3073	0.59	+0.3
3,143,205	-		GFF3073	0.60	+1.2
3,143,224	-		GFF3073	0.62	-0.1
3,143,229	+		GFF3073	0.63	-0.8
3,143,232	-		GFF3073	0.64	-0.9
3,143,234	+		GFF3073	0.64	-1.4
3,143,237	-		GFF3073	0.64	-0.3
3,143,237	-		GFF3073	0.64	-0.3
3,143,238	+		GFF3073	0.65	+0.1
3,143,242	-		GFF3073	0.65	-0.0
3,143,242	-		GFF3073	0.65	-0.0
3,143,242	-		GFF3073	0.65	-0.6
3,143,244	-		GFF3073	0.65	-1.9
3,143,248	+		GFF3073	0.66	+0.4
3,143,278	-		GFF3073	0.71	+0.6
3,143,285	+		GFF3073	0.72	-1.4
3,143,285	+		GFF3073	0.72	+0.3
3,143,302	+		GFF3073	0.74	-1.9
3,143,327	-		GFF3073	0.78	-1.7
3,143,332	-		GFF3073	0.79	-0.1
3,143,366	+		GFF3073	0.84	-1.7
3,143,388	+		GFF3073	0.87	-0.1
3,143,389	+		GFF3073	0.87	+1.0
3,143,389	+		GFF3073	0.87	+0.9
3,143,396	-		GFF3073	0.88	+0.9
3,143,396	-		GFF3073	0.88	-2.0
3,143,396	-		GFF3073	0.88	+0.4
3,143,422	+				-0.5
3,143,423	-				+1.1
3,143,430	-				-0.0
3,143,461	-				-0.2
3,143,467	+				-0.8
3,143,469	-				-0.2
3,143,475	-				+0.3
3,143,527	+				+0.1
3,143,527	+				-0.3
3,143,565	-				-0.4
3,143,599	-				-0.3
3,143,620	-		GFF3074	0.10	-0.0
3,143,622	+		GFF3074	0.10	-0.1
3,143,630	-		GFF3074	0.11	-1.3
3,143,630	-		GFF3074	0.11	+0.7
3,143,630	-		GFF3074	0.11	-2.3
3,143,637	-		GFF3074	0.11	+0.5
3,143,666	+		GFF3074	0.14	+0.5
3,143,667	+		GFF3074	0.14	-0.5
3,143,675	-		GFF3074	0.14	+0.7
3,143,675	-		GFF3074	0.14	-1.0
3,143,770	-		GFF3074	0.21	-0.8
3,143,797	-		GFF3074	0.23	-0.7
3,143,840	-		GFF3074	0.26	+0.7
3,143,844	+		GFF3074	0.27	+0.1
3,143,849	+		GFF3074	0.27	-0.2
3,143,849	+		GFF3074	0.27	-0.6
3,143,849	+		GFF3074	0.27	-0.3
3,143,849	+		GFF3074	0.27	-1.3
3,143,849	+		GFF3074	0.27	+0.6
3,143,849	+		GFF3074	0.27	-1.7
3,143,849	+		GFF3074	0.27	+0.3
3,143,849	+		GFF3074	0.27	-0.8
3,143,849	+		GFF3074	0.27	-1.3
3,143,849	+		GFF3074	0.27	-0.9
3,143,849	+		GFF3074	0.27	-1.3
3,143,849	+		GFF3074	0.27	+1.5
3,143,849	+		GFF3074	0.27	+0.9
3,143,849	+		GFF3074	0.27	-1.4
3,143,849	+		GFF3074	0.27	-1.0
3,143,849	+		GFF3074	0.27	+0.7
3,143,852	-		GFF3074	0.27	-0.8
3,143,852	-		GFF3074	0.27	-0.0
3,143,857	-		GFF3074	0.28	-2.4
3,143,857	-		GFF3074	0.28	+0.1
3,143,857	-		GFF3074	0.28	-0.1
3,143,857	-		GFF3074	0.28	-0.3
3,143,857	-		GFF3074	0.28	-1.5
3,143,857	-		GFF3074	0.28	-1.2
3,143,857	-		GFF3074	0.28	+0.2
3,143,857	-		GFF3074	0.28	-0.0
3,143,857	-		GFF3074	0.28	-1.3
3,143,857	-		GFF3074	0.28	+0.5
3,143,870	-		GFF3074	0.29	-0.7
3,143,919	-		GFF3074	0.32	+0.6
3,143,934	-		GFF3074	0.33	-0.5
3,143,934	-		GFF3074	0.33	-0.7
3,143,971	-		GFF3074	0.36	+0.2
3,144,008	+		GFF3074	0.39	+0.3
3,144,070	-		GFF3074	0.43	-1.1
3,144,070	-		GFF3074	0.43	-0.7
3,144,102	-		GFF3074	0.46	-0.8
3,144,103	+		GFF3074	0.46	+0.0
3,144,150	+		GFF3074	0.49	-0.2
3,144,157	-		GFF3074	0.50	-0.7
3,144,183	-		GFF3074	0.52	+0.2
3,144,212	+		GFF3074	0.54	+0.1
3,144,218	+		GFF3074	0.54	-1.5
3,144,218	+		GFF3074	0.54	+0.4
3,144,218	+		GFF3074	0.54	-0.3
3,144,246	-		GFF3074	0.56	+0.8
3,144,257	+		GFF3074	0.57	+0.6
3,144,262	+		GFF3074	0.57	+0.4
3,144,287	-		GFF3074	0.59	-1.0
3,144,289	+		GFF3074	0.59	-0.0
3,144,289	+		GFF3074	0.59	-0.8
3,144,297	-		GFF3074	0.60	-1.0
3,144,297	-		GFF3074	0.60	-0.0
3,144,297	-		GFF3074	0.60	-0.3
3,144,297	-		GFF3074	0.60	+0.9
3,144,297	-		GFF3074	0.60	-1.4
3,144,297	-		GFF3074	0.60	-1.8
3,144,299	-		GFF3074	0.60	-0.3
3,144,338	+		GFF3074	0.63	-0.2
3,144,338	+		GFF3074	0.63	-1.7
3,144,338	+		GFF3074	0.63	-1.1
3,144,346	-		GFF3074	0.64	-1.3
3,144,346	-		GFF3074	0.64	-0.3
3,144,346	-		GFF3074	0.64	-2.2
3,144,346	-		GFF3074	0.64	+0.3
3,144,346	-		GFF3074	0.64	-0.3
3,144,362	+		GFF3074	0.65	+0.7
3,144,365	-		GFF3074	0.65	+0.3
3,144,370	-		GFF3074	0.65	-0.2
3,144,370	-		GFF3074	0.65	+0.9
3,144,371	-		GFF3074	0.65	-0.8
3,144,391	+		GFF3074	0.67	+0.6
3,144,391	+		GFF3074	0.67	+0.3
3,144,391	+		GFF3074	0.67	-0.4
3,144,399	-		GFF3074	0.67	-0.1
3,144,399	-		GFF3074	0.67	-0.6
3,144,433	-		GFF3074	0.70	+0.7
3,144,464	-		GFF3074	0.72	+0.4
3,144,464	-		GFF3074	0.72	+0.5