Strain Fitness in Sphingobium sp. HT1-2 around GFF3067

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,137,484	+				-0.6
3,137,484	+				-1.1
3,137,484	+				+0.8
3,137,484	+				-0.4
3,137,484	+				-1.2
3,137,487	+				-1.4
3,137,492	-				+0.2
3,137,532	+				-0.0
3,137,534	+				-0.2
3,137,540	-				-1.8
3,137,540	-				-1.7
3,137,540	-				-0.3
3,137,550	-				-0.8
3,137,569	-				+0.5
3,137,576	+				-1.5
3,137,586	+				+0.5
3,137,587	+				+0.4
3,137,594	-				-1.3
3,137,630	+		GFF3066	0.12	+0.2
3,137,641	+		GFF3066	0.14	-0.1
3,137,648	+		GFF3066	0.14	-0.4
3,137,655	+		GFF3066	0.15	-0.1
3,137,656	-		GFF3066	0.15	+1.0
3,137,656	-		GFF3066	0.15	-0.3
3,137,691	+		GFF3066	0.19	-1.9
3,137,723	-		GFF3066	0.23	+0.5
3,137,728	-		GFF3066	0.23	-3.3
3,137,729	+		GFF3066	0.23	-2.8
3,137,733	-		GFF3066	0.24	-1.3
3,137,784	-		GFF3066	0.29	-0.0
3,137,794	-		GFF3066	0.31	+0.3
3,137,825	+		GFF3066	0.34	-2.2
3,137,858	+		GFF3066	0.38	+1.0
3,137,896	-		GFF3066	0.42	-0.8
3,137,899	+		GFF3066	0.42	-0.3
3,137,899	+		GFF3066	0.42	-0.2
3,137,899	+		GFF3066	0.42	+0.3
3,137,899	+		GFF3066	0.42	-0.7
3,137,899	+		GFF3066	0.42	-0.2
3,137,899	+		GFF3066	0.42	-2.1
3,137,899	+		GFF3066	0.42	-1.2
3,137,904	+		GFF3066	0.43	-1.1
3,137,907	-		GFF3066	0.43	+0.4
3,137,907	-		GFF3066	0.43	-1.4
3,137,934	-		GFF3066	0.46	-0.1
3,137,949	+		GFF3066	0.48	-0.1
3,137,963	-		GFF3066	0.49	+0.1
3,138,036	+		GFF3066	0.57	+0.2
3,138,100	+		GFF3066	0.64	+0.4
3,138,100	+		GFF3066	0.64	-1.7
3,138,101	+		GFF3066	0.65	+0.1
3,138,101	+		GFF3066	0.65	+1.3
3,138,108	-		GFF3066	0.65	-0.6
3,138,108	-		GFF3066	0.65	-1.5
3,138,109	-		GFF3066	0.65	-0.6
3,138,109	-		GFF3066	0.65	+0.4
3,138,111	+		GFF3066	0.66	+0.5
3,138,223	+		GFF3066	0.78	+0.6
3,138,223	+		GFF3066	0.78	-1.9
3,138,243	+		GFF3066	0.80	-0.4
3,138,248	+		GFF3066	0.81	+0.4
3,138,248	+		GFF3066	0.81	-0.2
3,138,250	+		GFF3066	0.81	+0.8
3,138,250	+		GFF3066	0.81	+0.3
3,138,256	-		GFF3066	0.82	-2.3
3,138,258	-		GFF3066	0.82	-0.5
3,138,280	-		GFF3066	0.84	+0.7
3,138,294	+		GFF3066	0.86	+0.8
3,138,302	-		GFF3066	0.87	+1.5
3,138,309	+		GFF3066	0.88	-0.1
3,138,317	+		GFF3066	0.88	+0.3
3,138,317	+		GFF3066	0.88	-0.3
3,138,325	-		GFF3066	0.89	+0.3
3,138,332	+				-0.5
3,138,340	-				-0.3
3,138,340	-				+0.1
3,138,350	-				+0.1
3,138,365	+				+0.1
3,138,392	-				+0.2
3,138,394	+				-0.7
3,138,417	+				-1.5
3,138,474	-				+1.0
3,138,474	-				-0.1
3,138,474	-				-0.8
3,138,475	+				+0.6
3,138,475	+				-0.7
3,138,475	+				+0.1
3,138,483	-				+0.1
3,138,493	-				+0.4
3,138,495	+				+0.8
3,138,511	-				+0.5
3,138,521	-				-0.5
3,138,530	+				-0.2
3,138,542	+				+0.6
3,138,547	+				+0.6
3,138,555	-				-0.7
3,138,560	-				+0.6
3,138,560	-				+0.4
3,138,627	+		GFF3067	0.10	-2.3
3,138,654	+		GFF3067	0.12	-1.5
3,138,662	-		GFF3067	0.13	+0.3
3,138,664	+		GFF3067	0.13	-0.2
3,138,685	+		GFF3067	0.14	-2.3
3,138,710	+		GFF3067	0.16	-0.6
3,138,717	-		GFF3067	0.16	+0.3
3,138,718	-		GFF3067	0.16	+0.1
3,138,731	+		GFF3067	0.17	-2.1
3,138,769	+		GFF3067	0.20	-0.7
3,138,794	+		GFF3067	0.22	-0.3
3,138,794	+		GFF3067	0.22	-1.3
3,138,802	-		GFF3067	0.22	-0.6
3,138,802	-		GFF3067	0.22	-1.4
3,138,828	+		GFF3067	0.24	+0.8
3,138,828	+		GFF3067	0.24	-0.9
3,138,828	+		GFF3067	0.24	+0.7
3,138,836	-		GFF3067	0.25	+0.3
3,138,836	-		GFF3067	0.25	-1.2
3,138,836	-		GFF3067	0.25	+1.1
3,138,917	+		GFF3067	0.30	+0.7
3,138,922	+		GFF3067	0.30	-0.0
3,138,924	-		GFF3067	0.31	+0.2
3,138,932	+		GFF3067	0.31	-0.4
3,138,932	+		GFF3067	0.31	-1.4
3,138,932	+		GFF3067	0.31	-0.7
3,138,937	+		GFF3067	0.31	-1.0
3,138,940	-		GFF3067	0.32	+0.2
3,138,940	-		GFF3067	0.32	-1.3
3,138,949	-		GFF3067	0.32	-0.3
3,138,949	-		GFF3067	0.32	-0.2
3,138,951	+		GFF3067	0.32	-0.0
3,138,951	+		GFF3067	0.32	-0.9
3,138,959	-		GFF3067	0.33	-0.6
3,138,959	-		GFF3067	0.33	+0.2
3,138,959	-		GFF3067	0.33	-1.1
3,138,966	-		GFF3067	0.33	-0.7
3,138,968	+		GFF3067	0.34	-0.8
3,138,976	-		GFF3067	0.34	-2.9
3,138,998	+		GFF3067	0.36	-0.0
3,139,019	-		GFF3067	0.37	-0.1
3,139,064	-		GFF3067	0.40	-1.6
3,139,064	-		GFF3067	0.40	-1.6
3,139,081	-		GFF3067	0.41	-0.4
3,139,081	-		GFF3067	0.41	+0.3
3,139,120	+		GFF3067	0.44	-0.4
3,139,123	-		GFF3067	0.44	+1.2
3,139,128	-		GFF3067	0.44	-1.6
3,139,128	-		GFF3067	0.44	-1.5
3,139,135	+		GFF3067	0.45	-2.1
3,139,143	-		GFF3067	0.46	-0.1
3,139,152	+		GFF3067	0.46	+0.4
3,139,152	+		GFF3067	0.46	-0.3
3,139,154	+		GFF3067	0.46	-0.9
3,139,156	-		GFF3067	0.46	+0.9
3,139,162	-		GFF3067	0.47	-0.5
3,139,162	-		GFF3067	0.47	-1.7
3,139,175	-		GFF3067	0.48	-0.3
3,139,218	-		GFF3067	0.51	-1.6
3,139,220	+		GFF3067	0.51	+0.0
3,139,268	-		GFF3067	0.54	-0.7
3,139,271	-		GFF3067	0.54	-1.9
3,139,290	+		GFF3067	0.56	-0.0
3,139,294	-		GFF3067	0.56	+0.5
3,139,341	+		GFF3067	0.59	-1.5
3,139,346	+		GFF3067	0.59	-0.1
3,139,403	-		GFF3067	0.63	-2.3
3,139,408	-		GFF3067	0.64	-1.3
3,139,413	-		GFF3067	0.64	+0.3
3,139,432	+		GFF3067	0.65	+0.3
3,139,432	-		GFF3067	0.65	-1.0
3,139,451	-		GFF3067	0.67	+1.0
3,139,461	-		GFF3067	0.67	+0.7
3,139,461	-		GFF3067	0.67	-1.4
3,139,461	-		GFF3067	0.67	-0.4
3,139,461	-		GFF3067	0.67	-0.4
3,139,462	+		GFF3067	0.67	-0.4
3,139,467	+		GFF3067	0.68	+0.1
3,139,467	+		GFF3067	0.68	-0.2
3,139,476	-		GFF3067	0.68	-1.8
3,139,485	-		GFF3067	0.69	+0.4
3,139,489	+		GFF3067	0.69	-1.3
3,139,497	-		GFF3067	0.70	-1.0
3,139,497	-		GFF3067	0.70	+1.4
3,139,522	+		GFF3067	0.71	+0.6
3,139,522	+		GFF3067	0.71	-1.1
3,139,530	-		GFF3067	0.72	-0.3
3,139,530	-		GFF3067	0.72	-0.6
3,139,530	-		GFF3067	0.72	+0.8
3,139,542	-		GFF3067	0.73	-1.9
3,139,560	+		GFF3067	0.74	-0.3
3,139,589	+		GFF3067	0.76	+1.3
3,139,616	+		GFF3067	0.78	-1.4
3,139,624	-		GFF3067	0.78	-1.3
3,139,639	+		GFF3067	0.79	-0.5
3,139,647	-		GFF3067	0.80	-1.2
3,139,676	+		GFF3067	0.82	-0.4
3,139,694	+		GFF3067	0.83	-0.0
3,139,694	+		GFF3067	0.83	-1.1
3,139,702	-		GFF3067	0.84	-1.3
3,139,702	-		GFF3067	0.84	+0.5
3,139,708	+		GFF3067	0.84	+0.2
3,139,721	+		GFF3067	0.85	+0.2
3,139,721	+		GFF3067	0.85	-1.5
3,139,721	+		GFF3067	0.85	-0.7
3,139,721	+		GFF3067	0.85	+0.8
3,139,721	+		GFF3067	0.85	+0.9
3,139,721	+		GFF3067	0.85	-0.2
3,139,721	-		GFF3067	0.85	-1.2
3,139,725	+		GFF3067	0.85	+1.1
3,139,730	+		GFF3067	0.86	+0.3
3,139,749	-		GFF3067	0.87	-2.3
3,139,750	-		GFF3067	0.87	+0.4
3,139,767	+		GFF3067	0.88	-0.5
3,139,785	+		GFF3067	0.89	-1.2
3,139,785	+		GFF3067	0.89	-0.4
3,139,785	+		GFF3067	0.89	-0.9
3,139,785	+		GFF3067	0.89	-0.4
3,139,785	+		GFF3067	0.89	-0.5
3,139,785	+		GFF3067	0.89	-0.2
3,139,790	-		GFF3067	0.90	+0.1
3,139,793	-				-1.2
3,139,795	+				+1.7
3,139,803	-				-1.6
3,139,804	-				-1.1
3,139,837	+				-0.0
3,139,837	+				-0.5
3,139,837	+				-0.5
3,139,845	-				+0.1
3,139,845	-				-1.6
3,139,845	-				+0.6
3,139,855	-				-0.0
3,139,869	-				-0.3
3,139,927	+				-0.0
3,139,927	+				-1.7
3,139,927	+				+0.7
3,139,927	+				+0.9
3,139,927	+				-0.7
3,139,927	+				-0.2
3,139,927	+				-0.1
3,139,927	+				+0.3
3,139,927	+				-2.0
3,139,932	+				+0.1
3,139,935	-				-0.3
3,139,935	-				-1.1
3,139,935	-				-0.5
3,139,935	-				-0.9
3,139,935	-				-0.9
3,139,935	-				-1.4
3,139,940	-				+0.2
3,139,940	-				-0.8
3,139,940	-				-1.4
3,139,951	+				-0.9
3,139,961	+				-0.9
3,139,961	+				-1.0
3,139,962	+				-1.4
3,139,962	+				+0.9
3,139,962	+				-0.4
3,139,962	+				-2.6
3,139,969	-				-1.3
3,139,969	-				+0.9
3,139,970	-				+0.3
3,139,972	+				+0.2
3,139,972	+				-2.3
3,139,977	+		GFF3068	0.10	-0.9
3,139,980	-		GFF3068	0.11	+0.5
3,139,982	+		GFF3068	0.12	-2.3
3,139,982	+		GFF3068	0.12	+1.2
3,139,982	+		GFF3068	0.12	+0.3
3,140,083	+		GFF3068	0.43	-1.4
3,140,102	-		GFF3068	0.49	-0.8
3,140,122	+		GFF3068	0.55	+0.6
3,140,136	-		GFF3068	0.60	+1.3
3,140,176	+		GFF3068	0.72	-2.6
3,140,178	+		GFF3068	0.73	-0.0
3,140,189	+		GFF3068	0.76	-0.7
3,140,189	+		GFF3068	0.76	-0.4
3,140,197	+		GFF3068	0.79	+0.7
3,140,197	+		GFF3068	0.79	+0.5
3,140,197	+		GFF3068	0.79	+0.6
3,140,205	-		GFF3068	0.81	-0.5
3,140,205	-		GFF3068	0.81	-0.5
3,140,225	+		GFF3068	0.88	-0.6
3,140,233	-				-0.1
3,140,247	+				+0.5
3,140,287	-				+0.3
3,140,287	-				-0.2
3,140,353	+				-1.1
3,140,381	+				-0.5
3,140,389	-		GFF3069	0.11	-0.6
3,140,389	-		GFF3069	0.11	-0.5
3,140,389	-		GFF3069	0.11	-1.8
3,140,390	+		GFF3069	0.11	-0.8
3,140,434	-		GFF3069	0.17	-0.6
3,140,474	+		GFF3069	0.23	-0.4
3,140,475	+		GFF3069	0.23	-0.4
3,140,483	-		GFF3069	0.24	+1.3
3,140,483	-		GFF3069	0.24	-0.8
3,140,499	+		GFF3069	0.27	+0.4
3,140,499	+		GFF3069	0.27	-1.0
3,140,499	+		GFF3069	0.27	-1.3
3,140,499	+		GFF3069	0.27	+0.9
3,140,499	+		GFF3069	0.27	-0.3
3,140,499	+		GFF3069	0.27	+0.1
3,140,499	+		GFF3069	0.27	-0.2
3,140,507	-		GFF3069	0.28	+0.2
3,140,507	-		GFF3069	0.28	-2.0
3,140,507	-		GFF3069	0.28	+0.4
3,140,507	-		GFF3069	0.28	-0.3
3,140,507	-		GFF3069	0.28	-0.3
3,140,507	-		GFF3069	0.28	+0.1
3,140,507	-		GFF3069	0.28	+0.7
3,140,507	-		GFF3069	0.28	-0.3
3,140,510	+		GFF3069	0.28	-0.0
3,140,516	+		GFF3069	0.29	+0.5
3,140,531	+		GFF3069	0.31	+0.7
3,140,531	+		GFF3069	0.31	-0.6
3,140,531	+		GFF3069	0.31	-0.6
3,140,531	+		GFF3069	0.31	+0.3
3,140,531	+		GFF3069	0.31	-1.7
3,140,531	+		GFF3069	0.31	+0.5
3,140,531	+		GFF3069	0.31	-1.5
3,140,531	+		GFF3069	0.31	+0.4
3,140,531	+		GFF3069	0.31	-0.7
3,140,531	+		GFF3069	0.31	+0.4
3,140,531	+		GFF3069	0.31	+0.3
3,140,531	+		GFF3069	0.31	-0.4
3,140,531	+		GFF3069	0.31	+1.1
3,140,531	+		GFF3069	0.31	+0.2
3,140,539	-		GFF3069	0.32	+0.8
3,140,539	-		GFF3069	0.32	+0.2
3,140,539	-		GFF3069	0.32	+0.2
3,140,539	-		GFF3069	0.32	-1.7
3,140,539	-		GFF3069	0.32	+0.8
3,140,539	-		GFF3069	0.32	-1.9
3,140,539	-		GFF3069	0.32	-0.8
3,140,539	-		GFF3069	0.32	-1.5
3,140,539	-		GFF3069	0.32	-0.5
3,140,539	-		GFF3069	0.32	-0.8
3,140,565	+		GFF3069	0.36	-0.2
3,140,613	-		GFF3069	0.43	-0.7
3,140,617	+		GFF3069	0.44	+0.5
3,140,630	+		GFF3069	0.46	-0.2
3,140,630	+		GFF3069	0.46	-0.4
3,140,630	-		GFF3069	0.46	-0.2
3,140,630	-		GFF3069	0.46	-1.6
3,140,633	+		GFF3069	0.46	-0.3
3,140,638	-		GFF3069	0.47	+0.7
3,140,638	-		GFF3069	0.47	+0.4
3,140,641	-		GFF3069	0.47	-1.2
3,140,654	+		GFF3069	0.49	-1.4
3,140,654	+		GFF3069	0.49	+0.4
3,140,659	+		GFF3069	0.50	+0.4
3,140,662	-		GFF3069	0.50	-1.0
3,140,662	-		GFF3069	0.50	-1.9
3,140,662	-		GFF3069	0.50	-0.1
3,140,680	+		GFF3069	0.53	-0.9
3,140,680	+		GFF3069	0.53	-2.7
3,140,736	+		GFF3069	0.61	+1.1
3,140,742	+		GFF3069	0.62	+0.2
3,140,763	-		GFF3069	0.65	+0.8
3,140,787	+		GFF3069	0.69	-1.0
3,140,789	-		GFF3069	0.69	-1.3
3,140,799	+		GFF3069	0.70	-2.2
3,140,802	+		GFF3069	0.71	+1.2
3,140,809	+		GFF3069	0.72	+1.1
3,140,824	+		GFF3069	0.74	+0.2
3,140,846	+		GFF3069	0.77	-2.8
3,140,854	-		GFF3069	0.79	+1.4
3,140,861	+		GFF3069	0.80	-1.4
3,140,874	+		GFF3069	0.81	-0.7
3,140,874	+		GFF3069	0.81	-0.6
3,140,882	-		GFF3069	0.83	-0.2
3,140,898	-		GFF3069	0.85	+0.4
3,140,908	-		GFF3069	0.86	+0.1
3,140,908	-		GFF3069	0.86	+0.3
3,140,915	+		GFF3069	0.87	-0.3
3,140,931	+		GFF3069	0.90	-0.5
3,140,931	-		GFF3069	0.90	-0.4
3,140,937	+				-0.5