Strain Fitness in Sphingobium sp. HT1-2 around GFF3066

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,136,548	-				-1.7
3,136,551	+				-0.3
3,136,551	+				-1.8
3,136,554	-				-1.5
3,136,559	-				+1.2
3,136,574	+				-2.3
3,136,574	+				-2.8
3,136,574	+				-1.6
3,136,574	+				-3.2
3,136,574	+				-2.2
3,136,574	+				-2.2
3,136,574	+				-3.6
3,136,574	+				-2.3
3,136,575	-				-2.2
3,136,575	-				-1.5
3,136,575	-				-2.3
3,136,582	-		GFF3064	0.11	-0.8
3,136,582	-		GFF3064	0.11	-2.4
3,136,582	-		GFF3064	0.11	-2.3
3,136,582	-		GFF3064	0.11	-2.4
3,136,582	-		GFF3064	0.11	-2.0
3,136,582	-		GFF3064	0.11	-1.6
3,136,584	+		GFF3064	0.12	-0.3
3,136,587	-		GFF3064	0.12	-0.6
3,136,592	-		GFF3064	0.14	-1.3
3,136,597	-		GFF3064	0.15	-0.6
3,136,599	+		GFF3064	0.16	-3.2
3,136,607	-		GFF3064	0.18	-2.9
3,136,630	-		GFF3064	0.25	-1.6
3,136,653	+		GFF3064	0.32	-2.8
3,136,653	+		GFF3064	0.32	-1.9
3,136,653	+		GFF3064	0.32	-2.0
3,136,653	+		GFF3064	0.32	-2.2
3,136,661	-		GFF3064	0.35	-3.0
3,136,726	+		GFF3064	0.55	-2.8
3,136,742	+		GFF3064	0.59	-0.1
3,136,754	+		GFF3064	0.63	-1.8
3,136,804	+		GFF3064	0.78	-1.2
3,136,804	+		GFF3064	0.78	-1.0
3,136,812	-		GFF3064	0.81	-1.5
3,136,821	-		GFF3064	0.83	-2.2
3,136,824	+		GFF3064	0.84	-0.8
3,136,831	+		GFF3064	0.86	-3.1
3,136,839	-		GFF3064	0.89	-1.7
3,136,843	-				-1.8
3,136,869	+				+1.2
3,136,869	+				-1.4
3,136,870	+				-0.4
3,136,870	+				+0.7
3,136,877	-				-2.1
3,136,877	-				+0.5
3,136,877	-				-1.1
3,136,877	-				-1.6
3,136,878	-				-1.3
3,136,878	-				-0.3
3,136,878	-				-0.4
3,136,899	-				-0.4
3,136,918	-				-0.9
3,136,946	-				+0.8
3,136,958	+				+0.3
3,136,958	-				-1.0
3,136,970	+				-2.0
3,136,974	-				-0.6
3,136,975	+				-0.7
3,136,978	-				+0.9
3,136,978	-				+1.1
3,136,983	-				+0.2
3,136,983	-				-2.2
3,136,997	-				-2.2
3,137,015	-				-1.3
3,137,025	+		GFF3065	0.11	+0.1
3,137,025	+		GFF3065	0.11	+1.8
3,137,033	-		GFF3065	0.13	+0.4
3,137,038	+		GFF3065	0.13	+0.4
3,137,039	-		GFF3065	0.14	-1.0
3,137,058	+		GFF3065	0.17	+0.1
3,137,066	-		GFF3065	0.18	+1.2
3,137,110	+		GFF3065	0.26	-1.2
3,137,110	+		GFF3065	0.26	+0.1
3,137,113	-		GFF3065	0.26	+0.4
3,137,118	-		GFF3065	0.27	-0.0
3,137,123	-		GFF3065	0.28	-0.6
3,137,140	+		GFF3065	0.31	+0.8
3,137,140	-		GFF3065	0.31	+0.4
3,137,161	+		GFF3065	0.35	-0.2
3,137,166	+		GFF3065	0.36	+1.2
3,137,168	+		GFF3065	0.36	+0.6
3,137,169	-		GFF3065	0.36	+0.7
3,137,169	-		GFF3065	0.36	-0.2
3,137,174	-		GFF3065	0.37	+0.2
3,137,175	+		GFF3065	0.37	-0.5
3,137,176	-		GFF3065	0.37	-0.8
3,137,190	+		GFF3065	0.40	+0.8
3,137,238	-		GFF3065	0.48	-0.1
3,137,240	+		GFF3065	0.48	+0.3
3,137,240	+		GFF3065	0.48	-0.3
3,137,240	+		GFF3065	0.48	-0.2
3,137,240	+		GFF3065	0.48	+0.7
3,137,240	+		GFF3065	0.48	-1.1
3,137,240	+		GFF3065	0.48	+0.6
3,137,240	+		GFF3065	0.48	-1.7
3,137,240	+		GFF3065	0.48	+0.4
3,137,240	+		GFF3065	0.48	+1.1
3,137,240	+		GFF3065	0.48	-1.2
3,137,240	+		GFF3065	0.48	+1.6
3,137,240	+		GFF3065	0.48	-1.4
3,137,240	-		GFF3065	0.48	-0.1
3,137,248	-		GFF3065	0.50	-1.3
3,137,248	-		GFF3065	0.50	-0.4
3,137,248	-		GFF3065	0.50	-1.2
3,137,248	-		GFF3065	0.50	+0.3
3,137,248	-		GFF3065	0.50	+0.3
3,137,248	-		GFF3065	0.50	-2.3
3,137,248	-		GFF3065	0.50	+1.4
3,137,248	-		GFF3065	0.50	-1.7
3,137,248	-		GFF3065	0.50	+0.4
3,137,248	-		GFF3065	0.50	+0.5
3,137,258	-		GFF3065	0.51	+0.3
3,137,271	-		GFF3065	0.54	-0.7
3,137,274	+		GFF3065	0.54	+0.3
3,137,274	+		GFF3065	0.54	-0.6
3,137,282	-		GFF3065	0.56	-1.8
3,137,320	+		GFF3065	0.62	+0.3
3,137,361	+		GFF3065	0.69	-1.4
3,137,363	+		GFF3065	0.70	+0.6
3,137,363	+		GFF3065	0.70	-1.3
3,137,369	-		GFF3065	0.71	-0.5
3,137,369	-		GFF3065	0.71	+0.1
3,137,370	+		GFF3065	0.71	+0.5
3,137,370	+		GFF3065	0.71	-0.3
3,137,371	-		GFF3065	0.71	-0.9
3,137,376	-		GFF3065	0.72	-1.3
3,137,378	-		GFF3065	0.72	-0.4
3,137,395	+		GFF3065	0.75	-0.5
3,137,403	-		GFF3065	0.77	-0.2
3,137,410	+		GFF3065	0.78	-0.9
3,137,418	-		GFF3065	0.79	+0.1
3,137,418	-		GFF3065	0.79	-0.2
3,137,429	+		GFF3065	0.81	+0.8
3,137,429	+		GFF3065	0.81	-0.7
3,137,429	+		GFF3065	0.81	+0.3
3,137,429	+		GFF3065	0.81	-0.2
3,137,429	+		GFF3065	0.81	-1.3
3,137,431	-		GFF3065	0.81	-0.0
3,137,434	+		GFF3065	0.82	-1.0
3,137,437	-		GFF3065	0.82	+1.4
3,137,437	-		GFF3065	0.82	-1.3
3,137,437	-		GFF3065	0.82	+0.5
3,137,449	-		GFF3065	0.84	+0.7
3,137,453	+		GFF3065	0.85	-0.2
3,137,457	+		GFF3065	0.86	-0.5
3,137,463	+		GFF3065	0.87	-0.4
3,137,465	-		GFF3065	0.87	+0.1
3,137,484	+				-0.6
3,137,484	+				-1.1
3,137,484	+				+0.8
3,137,484	+				-0.4
3,137,484	+				-1.2
3,137,487	+				-1.4
3,137,492	-				+0.2
3,137,532	+				-0.0
3,137,534	+				-0.2
3,137,540	-				-1.8
3,137,540	-				-1.7
3,137,540	-				-0.3
3,137,550	-				-0.8
3,137,569	-				+0.5
3,137,576	+				-1.5
3,137,586	+				+0.5
3,137,587	+				+0.4
3,137,594	-				-1.3
3,137,630	+		GFF3066	0.12	+0.2
3,137,641	+		GFF3066	0.14	-0.1
3,137,648	+		GFF3066	0.14	-0.4
3,137,655	+		GFF3066	0.15	-0.1
3,137,656	-		GFF3066	0.15	+1.0
3,137,656	-		GFF3066	0.15	-0.3
3,137,691	+		GFF3066	0.19	-1.9
3,137,723	-		GFF3066	0.23	+0.5
3,137,728	-		GFF3066	0.23	-3.3
3,137,729	+		GFF3066	0.23	-2.8
3,137,733	-		GFF3066	0.24	-1.3
3,137,784	-		GFF3066	0.29	-0.0
3,137,794	-		GFF3066	0.31	+0.3
3,137,825	+		GFF3066	0.34	-2.2
3,137,858	+		GFF3066	0.38	+1.0
3,137,896	-		GFF3066	0.42	-0.8
3,137,899	+		GFF3066	0.42	-0.3
3,137,899	+		GFF3066	0.42	-0.2
3,137,899	+		GFF3066	0.42	+0.3
3,137,899	+		GFF3066	0.42	-0.7
3,137,899	+		GFF3066	0.42	-0.2
3,137,899	+		GFF3066	0.42	-2.1
3,137,899	+		GFF3066	0.42	-1.2
3,137,904	+		GFF3066	0.43	-1.1
3,137,907	-		GFF3066	0.43	+0.4
3,137,907	-		GFF3066	0.43	-1.4
3,137,934	-		GFF3066	0.46	-0.1
3,137,949	+		GFF3066	0.48	-0.1
3,137,963	-		GFF3066	0.49	+0.1
3,138,036	+		GFF3066	0.57	+0.2
3,138,100	+		GFF3066	0.64	+0.4
3,138,100	+		GFF3066	0.64	-1.7
3,138,101	+		GFF3066	0.65	+0.1
3,138,101	+		GFF3066	0.65	+1.3
3,138,108	-		GFF3066	0.65	-0.6
3,138,108	-		GFF3066	0.65	-1.5
3,138,109	-		GFF3066	0.65	-0.6
3,138,109	-		GFF3066	0.65	+0.4
3,138,111	+		GFF3066	0.66	+0.5
3,138,223	+		GFF3066	0.78	+0.6
3,138,223	+		GFF3066	0.78	-1.9
3,138,243	+		GFF3066	0.80	-0.4
3,138,248	+		GFF3066	0.81	+0.4
3,138,248	+		GFF3066	0.81	-0.2
3,138,250	+		GFF3066	0.81	+0.8
3,138,250	+		GFF3066	0.81	+0.3
3,138,256	-		GFF3066	0.82	-2.3
3,138,258	-		GFF3066	0.82	-0.5
3,138,280	-		GFF3066	0.84	+0.7
3,138,294	+		GFF3066	0.86	+0.8
3,138,302	-		GFF3066	0.87	+1.5
3,138,309	+		GFF3066	0.88	-0.1
3,138,317	+		GFF3066	0.88	+0.3
3,138,317	+		GFF3066	0.88	-0.3
3,138,325	-		GFF3066	0.89	+0.3
3,138,332	+				-0.5
3,138,340	-				-0.3
3,138,340	-				+0.1
3,138,350	-				+0.1
3,138,365	+				+0.1
3,138,392	-				+0.2
3,138,394	+				-0.7
3,138,417	+				-1.5
3,138,474	-				+1.0
3,138,474	-				-0.1
3,138,474	-				-0.8
3,138,475	+				+0.6
3,138,475	+				-0.7
3,138,475	+				+0.1
3,138,483	-				+0.1
3,138,493	-				+0.4
3,138,495	+				+0.8
3,138,511	-				+0.5
3,138,521	-				-0.5
3,138,530	+				-0.2
3,138,542	+				+0.6
3,138,547	+				+0.6
3,138,555	-				-0.7
3,138,560	-				+0.6
3,138,560	-				+0.4
3,138,627	+		GFF3067	0.10	-2.3
3,138,654	+		GFF3067	0.12	-1.5
3,138,662	-		GFF3067	0.13	+0.3
3,138,664	+		GFF3067	0.13	-0.2
3,138,685	+		GFF3067	0.14	-2.3
3,138,710	+		GFF3067	0.16	-0.6
3,138,717	-		GFF3067	0.16	+0.3
3,138,718	-		GFF3067	0.16	+0.1
3,138,731	+		GFF3067	0.17	-2.1
3,138,769	+		GFF3067	0.20	-0.7
3,138,794	+		GFF3067	0.22	-0.3
3,138,794	+		GFF3067	0.22	-1.3
3,138,802	-		GFF3067	0.22	-0.6
3,138,802	-		GFF3067	0.22	-1.4
3,138,828	+		GFF3067	0.24	+0.8
3,138,828	+		GFF3067	0.24	-0.9
3,138,828	+		GFF3067	0.24	+0.7
3,138,836	-		GFF3067	0.25	+0.3
3,138,836	-		GFF3067	0.25	-1.2
3,138,836	-		GFF3067	0.25	+1.1
3,138,917	+		GFF3067	0.30	+0.7
3,138,922	+		GFF3067	0.30	-0.0
3,138,924	-		GFF3067	0.31	+0.2
3,138,932	+		GFF3067	0.31	-0.4
3,138,932	+		GFF3067	0.31	-1.4
3,138,932	+		GFF3067	0.31	-0.7
3,138,937	+		GFF3067	0.31	-1.0
3,138,940	-		GFF3067	0.32	+0.2
3,138,940	-		GFF3067	0.32	-1.3
3,138,949	-		GFF3067	0.32	-0.3
3,138,949	-		GFF3067	0.32	-0.2
3,138,951	+		GFF3067	0.32	-0.0
3,138,951	+		GFF3067	0.32	-0.9
3,138,959	-		GFF3067	0.33	-0.6
3,138,959	-		GFF3067	0.33	+0.2
3,138,959	-		GFF3067	0.33	-1.1
3,138,966	-		GFF3067	0.33	-0.7
3,138,968	+		GFF3067	0.34	-0.8
3,138,976	-		GFF3067	0.34	-2.9
3,138,998	+		GFF3067	0.36	-0.0
3,139,019	-		GFF3067	0.37	-0.1
3,139,064	-		GFF3067	0.40	-1.6
3,139,064	-		GFF3067	0.40	-1.6
3,139,081	-		GFF3067	0.41	-0.4
3,139,081	-		GFF3067	0.41	+0.3
3,139,120	+		GFF3067	0.44	-0.4
3,139,123	-		GFF3067	0.44	+1.2
3,139,128	-		GFF3067	0.44	-1.6
3,139,128	-		GFF3067	0.44	-1.5
3,139,135	+		GFF3067	0.45	-2.1
3,139,143	-		GFF3067	0.46	-0.1
3,139,152	+		GFF3067	0.46	+0.4
3,139,152	+		GFF3067	0.46	-0.3
3,139,154	+		GFF3067	0.46	-0.9
3,139,156	-		GFF3067	0.46	+0.9
3,139,162	-		GFF3067	0.47	-0.5
3,139,162	-		GFF3067	0.47	-1.7
3,139,175	-		GFF3067	0.48	-0.3
3,139,218	-		GFF3067	0.51	-1.6
3,139,220	+		GFF3067	0.51	+0.0
3,139,268	-		GFF3067	0.54	-0.7
3,139,271	-		GFF3067	0.54	-1.9
3,139,290	+		GFF3067	0.56	-0.0
3,139,294	-		GFF3067	0.56	+0.5
3,139,341	+		GFF3067	0.59	-1.5
3,139,346	+		GFF3067	0.59	-0.1
3,139,403	-		GFF3067	0.63	-2.3
3,139,408	-		GFF3067	0.64	-1.3
3,139,413	-		GFF3067	0.64	+0.3