Strain Fitness in Sphingobium sp. HT1-2 around GFF3022

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,092,221	+		GFF3021	0.70	-0.3
3,092,221	+		GFF3021	0.70	+0.1
3,092,228	+		GFF3021	0.70	-1.5
3,092,228	+		GFF3021	0.70	-0.5
3,092,231	-		GFF3021	0.70	-0.3
3,092,231	-		GFF3021	0.70	+0.2
3,092,236	+		GFF3021	0.71	-1.3
3,092,236	-		GFF3021	0.71	+0.0
3,092,236	-		GFF3021	0.71	-0.8
3,092,236	-		GFF3021	0.71	-1.4
3,092,254	+		GFF3021	0.71	+0.7
3,092,254	+		GFF3021	0.71	+0.3
3,092,266	-		GFF3021	0.71	-1.4
3,092,316	-		GFF3021	0.73	-0.2
3,092,316	-		GFF3021	0.73	-1.7
3,092,316	-		GFF3021	0.73	+1.1
3,092,361	+		GFF3021	0.74	-1.4
3,092,361	-		GFF3021	0.74	-0.4
3,092,363	+		GFF3021	0.75	-0.5
3,092,382	-		GFF3021	0.75	+0.3
3,092,399	+		GFF3021	0.76	+0.1
3,092,408	-		GFF3021	0.76	+1.1
3,092,427	+		GFF3021	0.76	-0.1
3,092,438	+		GFF3021	0.77	-0.4
3,092,448	-		GFF3021	0.77	-0.0
3,092,452	-		GFF3021	0.77	+0.7
3,092,452	-		GFF3021	0.77	+0.9
3,092,461	+		GFF3021	0.78	-1.8
3,092,464	-		GFF3021	0.78	-2.6
3,092,465	-		GFF3021	0.78	-0.8
3,092,474	+		GFF3021	0.78	-0.4
3,092,482	-		GFF3021	0.78	-2.3
3,092,482	-		GFF3021	0.78	+1.2
3,092,502	+		GFF3021	0.79	+0.5
3,092,505	-		GFF3021	0.79	-0.3
3,092,505	-		GFF3021	0.79	-0.1
3,092,510	-		GFF3021	0.79	-0.4
3,092,516	-		GFF3021	0.79	-0.2
3,092,544	+		GFF3021	0.80	+0.6
3,092,552	-		GFF3021	0.80	+0.6
3,092,552	-		GFF3021	0.80	-0.5
3,092,552	-		GFF3021	0.80	+1.1
3,092,554	-		GFF3021	0.80	-1.4
3,092,557	-		GFF3021	0.81	-0.4
3,092,585	-		GFF3021	0.81	-0.4
3,092,589	-		GFF3021	0.82	-1.7
3,092,600	+		GFF3021	0.82	-0.5
3,092,600	+		GFF3021	0.82	+0.6
3,092,608	-		GFF3021	0.82	+0.5
3,092,608	-		GFF3021	0.82	-1.8
3,092,608	-		GFF3021	0.82	+0.0
3,092,611	+		GFF3021	0.82	+1.0
3,092,616	+		GFF3021	0.82	-0.7
3,092,619	-		GFF3021	0.82	-0.9
3,092,619	-		GFF3021	0.82	+0.7
3,092,644	+		GFF3021	0.83	-1.3
3,092,647	+		GFF3021	0.83	-0.4
3,092,647	+		GFF3021	0.83	-0.4
3,092,647	+		GFF3021	0.83	-0.5
3,092,647	+		GFF3021	0.83	+0.3
3,092,649	-		GFF3021	0.83	+0.3
3,092,655	-		GFF3021	0.84	-2.3
3,092,655	-		GFF3021	0.84	-0.4
3,092,655	-		GFF3021	0.84	-0.2
3,092,655	-		GFF3021	0.84	-0.6
3,092,655	-		GFF3021	0.84	-0.6
3,092,655	-		GFF3021	0.84	-0.8
3,092,655	-		GFF3021	0.84	-0.9
3,092,657	+		GFF3021	0.84	-0.2
3,092,670	-		GFF3021	0.84	-1.6
3,092,709	-		GFF3021	0.85	-1.7
3,092,736	+		GFF3021	0.86	+0.8
3,092,756	+		GFF3021	0.87	+0.7
3,092,757	+		GFF3021	0.87	+0.7
3,092,761	+		GFF3021	0.87	+1.5
3,092,769	+		GFF3021	0.87	-2.3
3,092,802	+		GFF3021	0.88	-1.3
3,092,807	+		GFF3021	0.88	-0.0
3,092,810	-		GFF3021	0.88	-1.3
3,092,810	-		GFF3021	0.88	-0.5
3,092,810	-		GFF3021	0.88	-0.8
3,092,810	-		GFF3021	0.88	-2.1
3,092,815	-		GFF3021	0.89	+0.9
3,092,833	+		GFF3021	0.89	-1.9
3,092,842	+		GFF3021	0.89	-0.4
3,092,869	+				-0.2
3,092,871	+				+0.8
3,092,887	-				+0.3
3,092,888	-				-0.6
3,092,895	-				-2.0
3,092,910	-				-1.3
3,092,912	+				-1.4
3,092,929	-				-1.3
3,092,941	+				-0.4
3,092,954	-				+0.2
3,092,978	-				+0.0
3,092,980	+				+0.3
3,092,988	-				+0.6
3,092,988	-				-0.3
3,092,988	-				+1.4
3,092,988	-				-0.2
3,092,998	+				-1.3
3,093,014	+				-0.1
3,093,068	+				+0.3
3,093,076	-				+0.9
3,093,076	-				+0.0
3,093,113	-				-0.2
3,093,141	+				-2.0
3,093,142	-				-0.1
3,093,155	+				+0.2
3,093,155	+				+1.1
3,093,155	+				-0.5
3,093,160	+				+0.5
3,093,160	+				-0.2
3,093,160	+				+1.5
3,093,160	+				-1.3
3,093,163	-				-0.3
3,093,163	-				+0.0
3,093,163	-				-0.5
3,093,163	-				+0.6
3,093,163	-				-1.1
3,093,163	-				+0.4
3,093,163	-				-0.7
3,093,163	-				+0.5
3,093,163	-				-1.0
3,093,163	-				-0.6
3,093,163	-				-1.6
3,093,168	-				-0.7
3,093,168	-				-0.0
3,093,173	+				-0.1
3,093,173	+				-0.6
3,093,174	+				-0.1
3,093,181	-				-2.3
3,093,192	-				+0.3
3,093,199	-				+1.3
3,093,201	+				-1.6
3,093,201	+				-0.2
3,093,215	-				-1.1
3,093,261	+				-0.3
3,093,276	+		GFF3022	0.10	+0.2
3,093,305	-		GFF3022	0.13	-1.2
3,093,342	-		GFF3022	0.17	-0.5
3,093,372	-		GFF3022	0.21	-0.8
3,093,378	+		GFF3022	0.21	-0.0
3,093,409	-		GFF3022	0.25	-0.8
3,093,409	-		GFF3022	0.25	-1.5
3,093,420	-		GFF3022	0.26	-1.6
3,093,420	-		GFF3022	0.26	-0.4
3,093,433	+		GFF3022	0.28	+0.3
3,093,433	+		GFF3022	0.28	-2.1
3,093,433	+		GFF3022	0.28	+1.2
3,093,441	-		GFF3022	0.28	-0.3
3,093,441	-		GFF3022	0.28	-0.5
3,093,441	-		GFF3022	0.28	+0.2
3,093,441	-		GFF3022	0.28	+0.7
3,093,441	-		GFF3022	0.28	+0.4
3,093,441	-		GFF3022	0.28	-1.3
3,093,448	+		GFF3022	0.29	-0.3
3,093,492	+		GFF3022	0.34	-1.9
3,093,492	-		GFF3022	0.34	+0.1
3,093,520	-		GFF3022	0.37	+0.1
3,093,522	+		GFF3022	0.37	+0.1
3,093,532	+		GFF3022	0.39	+1.1
3,093,532	+		GFF3022	0.39	+0.4
3,093,532	+		GFF3022	0.39	-2.0
3,093,532	+		GFF3022	0.39	-0.5
3,093,540	-		GFF3022	0.39	+0.4
3,093,540	-		GFF3022	0.39	-2.0
3,093,540	-		GFF3022	0.39	-0.7
3,093,540	-		GFF3022	0.39	-1.3
3,093,540	-		GFF3022	0.39	+0.5
3,093,561	+		GFF3022	0.42	-0.1
3,093,566	+		GFF3022	0.42	-1.9
3,093,575	+		GFF3022	0.43	+0.9
3,093,576	-		GFF3022	0.43	+1.3
3,093,583	-		GFF3022	0.44	+1.0
3,093,584	+		GFF3022	0.44	-1.3
3,093,597	+		GFF3022	0.46	+1.5
3,093,597	+		GFF3022	0.46	+0.1
3,093,605	-		GFF3022	0.47	-2.7
3,093,605	-		GFF3022	0.47	-0.9
3,093,605	-		GFF3022	0.47	+0.9
3,093,609	-		GFF3022	0.47	+0.0
3,093,613	-		GFF3022	0.48	+1.0
3,093,615	+		GFF3022	0.48	-2.0
3,093,647	+		GFF3022	0.51	-0.8
3,093,660	-		GFF3022	0.53	-0.8
3,093,682	-		GFF3022	0.55	+0.2
3,093,684	-		GFF3022	0.56	-0.2
3,093,684	-		GFF3022	0.56	-0.6
3,093,684	-		GFF3022	0.56	-0.0
3,093,691	+		GFF3022	0.56	-2.4
3,093,691	+		GFF3022	0.56	+0.3
3,093,694	-		GFF3022	0.57	+1.6
3,093,710	+		GFF3022	0.58	+0.7
3,093,710	+		GFF3022	0.58	+0.2
3,093,710	+		GFF3022	0.58	-1.8
3,093,715	+		GFF3022	0.59	-0.4
3,093,718	-		GFF3022	0.59	-1.3
3,093,718	-		GFF3022	0.59	-0.2
3,093,718	-		GFF3022	0.59	-0.9
3,093,718	-		GFF3022	0.59	+0.1
3,093,718	-		GFF3022	0.59	-2.1
3,093,718	-		GFF3022	0.59	-0.2
3,093,728	+		GFF3022	0.60	+0.7
3,093,732	+		GFF3022	0.61	+1.6
3,093,732	+		GFF3022	0.61	+0.1
3,093,732	+		GFF3022	0.61	+0.8
3,093,732	+		GFF3022	0.61	+0.1
3,093,732	+		GFF3022	0.61	-1.3
3,093,740	-		GFF3022	0.62	+0.6
3,093,740	-		GFF3022	0.62	+0.2
3,093,740	-		GFF3022	0.62	-0.9
3,093,740	-		GFF3022	0.62	-0.1
3,093,740	-		GFF3022	0.62	-0.0
3,093,740	-		GFF3022	0.62	-0.7
3,093,740	-		GFF3022	0.62	-0.4
3,093,740	-		GFF3022	0.62	-0.2
3,093,740	-		GFF3022	0.62	+0.4
3,093,744	+		GFF3022	0.62	-1.3
3,093,745	-		GFF3022	0.62	-0.0
3,093,750	-		GFF3022	0.63	-0.4
3,093,752	-		GFF3022	0.63	-1.3
3,093,779	+		GFF3022	0.66	+0.1
3,093,779	+		GFF3022	0.66	+0.3
3,093,779	+		GFF3022	0.66	-1.3
3,093,779	+		GFF3022	0.66	+0.6
3,093,779	+		GFF3022	0.66	-0.9
3,093,787	-		GFF3022	0.67	-0.3
3,093,790	+		GFF3022	0.67	+0.2
3,093,795	+		GFF3022	0.68	-0.9
3,093,803	-		GFF3022	0.69	+0.2
3,093,808	-		GFF3022	0.69	+0.0
3,093,832	-		GFF3022	0.72	-1.1
3,093,845	+		GFF3022	0.73	+0.5
3,093,845	+		GFF3022	0.73	-0.0
3,093,853	-		GFF3022	0.74	-1.0
3,093,863	+		GFF3022	0.75	+1.0
3,093,864	+		GFF3022	0.76	+0.3
3,093,871	-		GFF3022	0.76	+0.2
3,093,886	+		GFF3022	0.78	+0.6
3,093,889	-		GFF3022	0.78	+0.1
3,093,922	-		GFF3022	0.82	-1.2
3,093,960	-		GFF3022	0.86	+1.1
3,093,970	+		GFF3022	0.87	+0.1
3,093,970	+		GFF3022	0.87	-0.6
3,093,970	+		GFF3022	0.87	+0.1
3,093,978	-		GFF3022	0.88	+0.6
3,093,978	-		GFF3022	0.88	-0.3
3,093,978	-		GFF3022	0.88	-0.4
3,094,003	+				-0.8
3,094,006	+				+0.2
3,094,006	-				-0.5
3,094,008	-				-0.3
3,094,008	-				-0.7
3,094,014	-				+0.3
3,094,014	-				+0.6
3,094,024	-				-0.4
3,094,024	-				-0.7
3,094,055	+				+0.8
3,094,057	+				+0.2
3,094,065	-				+0.3
3,094,079	-				-1.5
3,094,084	-				-0.5
3,094,137	+				-0.1
3,094,137	+				-0.3
3,094,145	-				+1.1
3,094,145	-				+0.1
3,094,145	-				-2.6
3,094,146	+				-0.8
3,094,151	+				+0.9
3,094,181	-				-0.3
3,094,190	+				+0.6
3,094,199	-				-0.0
3,094,284	-				+0.2
3,094,329	-				-0.7
3,094,371	+				-0.4
3,094,379	-				+1.3
3,094,379	-				-1.1
3,094,413	-				-1.0
3,094,413	-				+0.5
3,094,423	+				-0.3
3,094,423	+				-2.0
3,094,423	+				-1.8
3,094,423	+				-1.4
3,094,423	+				-1.0
3,094,423	+				-1.6
3,094,423	+				+0.7
3,094,423	+				-1.4
3,094,423	+				+0.4
3,094,423	+				+0.8
3,094,428	+				+1.0
3,094,428	+				-0.7
3,094,431	-				+0.5
3,094,431	-				+1.3
3,094,433	+				+1.3
3,094,436	-				+0.7
3,094,441	-				-0.8
3,094,445	+				-1.8
3,094,452	+				+0.4
3,094,452	+				-0.8
3,094,460	-				+0.1
3,094,489	-				-0.3
3,094,490	+				+0.4
3,094,511	-				+0.7
3,094,514	+				-0.3
3,094,517	-				-0.1
3,094,522	-				-0.9
3,094,557	+				-0.8
3,094,566	+				-1.3
3,094,580	+				+0.5
3,094,585	+				+0.2
3,094,603	+				-0.7
3,094,608	+				-0.1
3,094,608	+				-0.8
3,094,616	-				-1.3
3,094,616	-				-1.7
3,094,616	-				-2.0
3,094,616	-				-0.6
3,094,627	+				-0.5
3,094,637	-				-0.2
3,094,644	+				-0.5
3,094,677	+				-0.9
3,094,677	+				+0.1
3,094,677	+				+0.1
3,094,678	-				-0.7
3,094,678	-				-1.0
3,094,685	-				-1.1
3,094,717	+				+1.1
3,094,746	-		GFF3023	0.10	-0.5
3,094,746	-		GFF3023	0.10	+0.2
3,094,760	+		GFF3023	0.11	+0.6
3,094,790	-		GFF3023	0.12	+0.7
3,094,804	+		GFF3023	0.12	-0.6
3,094,804	+		GFF3023	0.12	-0.9
3,094,807	-		GFF3023	0.12	-0.8
3,094,807	-		GFF3023	0.12	+1.2
3,094,831	-		GFF3023	0.13	-0.1
3,094,831	-		GFF3023	0.13	+1.4
3,094,850	+		GFF3023	0.14	-0.6
3,094,868	-		GFF3023	0.14	+0.2
3,094,868	-		GFF3023	0.14	-0.5
3,094,874	+		GFF3023	0.14	+0.2
3,094,887	+		GFF3023	0.15	-0.5
3,094,930	+		GFF3023	0.16	+0.3
3,094,931	+		GFF3023	0.16	+0.2
3,094,931	+		GFF3023	0.16	-0.7
3,094,936	+		GFF3023	0.16	-0.6
3,094,937	+		GFF3023	0.16	-0.5
3,094,938	-		GFF3023	0.16	-0.6
3,094,945	-		GFF3023	0.17	+0.4
3,094,977	+		GFF3023	0.18	-1.0
3,094,998	+		GFF3023	0.18	-0.4
3,094,998	+		GFF3023	0.18	-0.4
3,094,999	+		GFF3023	0.18	-1.3
3,094,999	+		GFF3023	0.18	-0.7
3,094,999	+		GFF3023	0.18	+0.2
3,094,999	+		GFF3023	0.18	+0.8
3,094,999	+		GFF3023	0.18	+0.0
3,094,999	+		GFF3023	0.18	-0.9
3,095,007	-		GFF3023	0.19	-0.3
3,095,007	-		GFF3023	0.19	+0.6
3,095,007	-		GFF3023	0.19	-0.8
3,095,007	-		GFF3023	0.19	+0.3
3,095,007	-		GFF3023	0.19	+0.2
3,095,013	-		GFF3023	0.19	+0.9
3,095,040	-		GFF3023	0.20	+0.9
3,095,043	+		GFF3023	0.20	-0.4
3,095,047	+		GFF3023	0.20	+0.1
3,095,055	-		GFF3023	0.20	-0.3
3,095,075	-		GFF3023	0.21	-0.4