Strain Fitness in Sphingobium sp. HT1-2 around GFF3008

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,071,481	-		GFF3007	0.17	-1.1
3,071,481	-		GFF3007	0.17	+0.6
3,071,481	-		GFF3007	0.17	-0.4
3,071,486	-		GFF3007	0.17	+0.9
3,071,488	+		GFF3007	0.17	-1.7
3,071,488	+		GFF3007	0.17	-0.2
3,071,493	+		GFF3007	0.18	-0.3
3,071,493	+		GFF3007	0.18	+0.3
3,071,496	-		GFF3007	0.18	-0.3
3,071,496	-		GFF3007	0.18	-1.3
3,071,501	-		GFF3007	0.18	-0.3
3,071,501	-		GFF3007	0.18	+1.3
3,071,501	-		GFF3007	0.18	-0.5
3,071,503	+		GFF3007	0.19	-0.1
3,071,503	+		GFF3007	0.19	-0.3
3,071,504	+		GFF3007	0.19	-0.7
3,071,509	+		GFF3007	0.19	-1.0
3,071,530	-		GFF3007	0.21	-1.8
3,071,540	+		GFF3007	0.22	+0.4
3,071,548	-		GFF3007	0.22	+0.8
3,071,601	+		GFF3007	0.27	-1.2
3,071,601	+		GFF3007	0.27	+0.2
3,071,603	+		GFF3007	0.27	+0.0
3,071,603	+		GFF3007	0.27	-1.1
3,071,613	+		GFF3007	0.28	+0.1
3,071,618	+		GFF3007	0.28	+1.1
3,071,623	+		GFF3007	0.29	-0.8
3,071,623	+		GFF3007	0.29	-0.4
3,071,623	+		GFF3007	0.29	-1.4
3,071,623	+		GFF3007	0.29	-1.4
3,071,623	+		GFF3007	0.29	-0.4
3,071,623	+		GFF3007	0.29	+0.1
3,071,623	+		GFF3007	0.29	-0.6
3,071,623	+		GFF3007	0.29	-0.9
3,071,623	+		GFF3007	0.29	-2.2
3,071,623	+		GFF3007	0.29	-0.3
3,071,623	+		GFF3007	0.29	-0.7
3,071,623	+		GFF3007	0.29	+0.2
3,071,623	+		GFF3007	0.29	-0.4
3,071,623	+		GFF3007	0.29	+0.3
3,071,623	+		GFF3007	0.29	-1.0
3,071,623	+		GFF3007	0.29	+1.8
3,071,623	+		GFF3007	0.29	-1.5
3,071,623	+		GFF3007	0.29	-0.6
3,071,623	+		GFF3007	0.29	-0.7
3,071,626	-		GFF3007	0.29	+0.8
3,071,631	-		GFF3007	0.29	-0.0
3,071,631	-		GFF3007	0.29	+1.2
3,071,631	-		GFF3007	0.29	-1.6
3,071,631	-		GFF3007	0.29	-1.1
3,071,631	-		GFF3007	0.29	-0.6
3,071,631	-		GFF3007	0.29	-0.9
3,071,631	-		GFF3007	0.29	-0.0
3,071,631	-		GFF3007	0.29	+1.8
3,071,631	-		GFF3007	0.29	-1.2
3,071,631	-		GFF3007	0.29	-0.1
3,071,631	-		GFF3007	0.29	+0.8
3,071,631	-		GFF3007	0.29	-1.6
3,071,631	-		GFF3007	0.29	+1.6
3,071,631	-		GFF3007	0.29	-0.5
3,071,633	-		GFF3007	0.30	-1.8
3,071,650	+		GFF3007	0.31	-0.1
3,071,650	+		GFF3007	0.31	+0.2
3,071,660	+		GFF3007	0.32	-0.3
3,071,665	+		GFF3007	0.32	+1.5
3,071,679	+		GFF3007	0.34	+0.9
3,071,746	+		GFF3007	0.39	-0.1
3,071,751	+		GFF3007	0.40	-0.8
3,071,751	+		GFF3007	0.40	-0.5
3,071,751	+		GFF3007	0.40	-0.5
3,071,751	+		GFF3007	0.40	+1.0
3,071,751	-		GFF3007	0.40	-0.0
3,071,751	-		GFF3007	0.40	+0.5
3,071,754	-		GFF3007	0.40	-1.0
3,071,764	-		GFF3007	0.41	-1.4
3,071,766	+		GFF3007	0.41	-0.2
3,071,770	+		GFF3007	0.41	-0.2
3,071,779	-		GFF3007	0.42	-1.0
3,071,779	-		GFF3007	0.42	-0.5
3,071,779	-		GFF3007	0.42	+0.9
3,071,786	-		GFF3007	0.43	-1.2
3,071,786	-		GFF3007	0.43	-0.2
3,071,813	+		GFF3007	0.45	-0.9
3,071,823	+		GFF3007	0.46	-2.0
3,071,823	+		GFF3007	0.46	-1.0
3,071,833	+		GFF3007	0.47	-0.2
3,071,851	+		GFF3007	0.48	-1.2
3,071,851	+		GFF3007	0.48	-0.6
3,071,851	+		GFF3007	0.48	-1.2
3,071,851	+		GFF3007	0.48	+0.1
3,071,851	+		GFF3007	0.48	-2.2
3,071,851	+		GFF3007	0.48	-0.7
3,071,851	+		GFF3007	0.48	+1.6
3,071,851	+		GFF3007	0.48	+0.4
3,071,851	+		GFF3007	0.48	+0.3
3,071,851	+		GFF3007	0.48	+0.5
3,071,851	+		GFF3007	0.48	-1.9
3,071,851	+		GFF3007	0.48	+1.1
3,071,851	+		GFF3007	0.48	-2.1
3,071,851	+		GFF3007	0.48	-0.2
3,071,851	+		GFF3007	0.48	+1.0
3,071,859	-		GFF3007	0.49	-0.4
3,071,859	-		GFF3007	0.49	-0.3
3,071,859	-		GFF3007	0.49	-0.8
3,071,859	-		GFF3007	0.49	-0.4
3,071,859	-		GFF3007	0.49	+0.4
3,071,859	-		GFF3007	0.49	+0.6
3,071,859	-		GFF3007	0.49	-0.2
3,071,859	-		GFF3007	0.49	-0.7
3,071,859	-		GFF3007	0.49	-1.7
3,071,865	+		GFF3007	0.49	-0.4
3,071,869	+		GFF3007	0.50	-0.8
3,071,873	-		GFF3007	0.50	-1.9
3,071,877	-		GFF3007	0.50	-0.6
3,071,886	+		GFF3007	0.51	+1.1
3,071,892	+		GFF3007	0.52	-2.2
3,071,892	+		GFF3007	0.52	+0.1
3,071,892	+		GFF3007	0.52	-1.0
3,071,905	+		GFF3007	0.53	+0.8
3,071,913	-		GFF3007	0.53	-0.5
3,071,913	-		GFF3007	0.53	-0.5
3,071,914	-		GFF3007	0.53	+0.2
3,071,918	+		GFF3007	0.54	+0.6
3,071,926	-		GFF3007	0.54	+0.3
3,071,926	-		GFF3007	0.54	-0.5
3,071,930	-		GFF3007	0.55	+1.3
3,071,937	+		GFF3007	0.55	-2.3
3,071,937	+		GFF3007	0.55	-1.3
3,071,937	+		GFF3007	0.55	-0.0
3,071,937	+		GFF3007	0.55	+0.8
3,071,937	+		GFF3007	0.55	-0.7
3,071,945	-		GFF3007	0.56	-1.5
3,071,945	-		GFF3007	0.56	+0.7
3,071,945	-		GFF3007	0.56	-0.3
3,071,945	-		GFF3007	0.56	+0.1
3,071,945	-		GFF3007	0.56	+0.9
3,071,945	-		GFF3007	0.56	+1.1
3,071,945	-		GFF3007	0.56	-2.0
3,071,945	-		GFF3007	0.56	-1.2
3,071,945	-		GFF3007	0.56	+0.3
3,071,945	-		GFF3007	0.56	+1.1
3,071,945	-		GFF3007	0.56	-0.3
3,071,945	-		GFF3007	0.56	+1.0
3,071,945	-		GFF3007	0.56	-0.0
3,071,945	-		GFF3007	0.56	-0.7
3,071,945	-		GFF3007	0.56	+0.3
3,071,947	+		GFF3007	0.56	+0.9
3,071,950	-		GFF3007	0.56	-0.0
3,071,957	+		GFF3007	0.57	-2.2
3,071,964	-		GFF3007	0.58	-0.7
3,071,971	-		GFF3007	0.58	+0.0
3,071,973	-		GFF3007	0.58	-0.4
3,071,974	+		GFF3007	0.59	-1.1
3,072,008	-		GFF3007	0.61	+0.7
3,072,008	-		GFF3007	0.61	-3.0
3,072,027	-		GFF3007	0.63	-1.5
3,072,040	+		GFF3007	0.64	+0.8
3,072,040	+		GFF3007	0.64	-0.8
3,072,065	+		GFF3007	0.66	+0.1
3,072,108	-		GFF3007	0.70	-1.6
3,072,165	-		GFF3007	0.75	-0.2
3,072,179	+		GFF3007	0.76	-0.2
3,072,185	-		GFF3007	0.76	+1.0
3,072,187	-		GFF3007	0.77	-0.5
3,072,206	+		GFF3007	0.78	-1.0
3,072,212	+		GFF3007	0.79	-1.1
3,072,247	+		GFF3007	0.82	-0.4
3,072,248	-		GFF3007	0.82	+0.6
3,072,272	+		GFF3007	0.84	-1.0
3,072,272	+		GFF3007	0.84	+0.3
3,072,272	+		GFF3007	0.84	+0.0
3,072,272	+		GFF3007	0.84	+0.1
3,072,279	-		GFF3007	0.84	+0.5
3,072,280	-		GFF3007	0.84	-0.8
3,072,280	-		GFF3007	0.84	+0.3
3,072,280	-		GFF3007	0.84	+0.4
3,072,288	-		GFF3007	0.85	-0.4
3,072,296	+		GFF3007	0.86	+0.2
3,072,307	+		GFF3007	0.87	+0.2
3,072,307	+		GFF3007	0.87	-0.6
3,072,322	+		GFF3007	0.88	-1.5
3,072,322	+		GFF3007	0.88	+0.3
3,072,342	+		GFF3007	0.90	-1.3
3,072,342	+		GFF3007	0.90	+1.9
3,072,342	+		GFF3007	0.90	-2.2
3,072,343	+		GFF3007	0.90	-0.1
3,072,343	+		GFF3007	0.90	-1.3
3,072,343	+		GFF3007	0.90	-0.6
3,072,343	+		GFF3007	0.90	-0.4
3,072,343	+		GFF3007	0.90	-0.9
3,072,343	+		GFF3007	0.90	+1.1
3,072,350	-				-0.4
3,072,350	-				-2.0
3,072,351	-				-0.8
3,072,351	-				-0.7
3,072,351	-				+0.3
3,072,379	-				+1.5
3,072,382	-				-0.5
3,072,388	+				+0.6
3,072,388	+				-0.7
3,072,395	+				-0.2
3,072,395	+				-0.2
3,072,395	+				+0.2
3,072,395	+				-1.1
3,072,395	+				+0.4
3,072,395	+				+1.3
3,072,395	+				+0.5
3,072,395	+				+0.9
3,072,396	-				+0.5
3,072,396	-				+0.3
3,072,403	-				-1.2
3,072,403	-				+1.1
3,072,403	-				-1.4
3,072,403	-				-0.1
3,072,403	-				-0.9
3,072,403	-				-2.6
3,072,403	-				+0.3
3,072,403	-				+0.1
3,072,403	-				+0.2
3,072,403	-				-0.3
3,072,420	-				+1.0
3,072,420	-				+1.1
3,072,465	-				-0.8
3,072,473	+				-2.3
3,072,490	+				-0.3
3,072,490	+				+0.3
3,072,492	-				+0.9
3,072,534	+		GFF3008	0.21	-0.9
3,072,534	+		GFF3008	0.21	-0.7
3,072,538	+		GFF3008	0.23	-0.3
3,072,538	+		GFF3008	0.23	+0.5
3,072,542	-		GFF3008	0.24	-0.9
3,072,558	+		GFF3008	0.30	+0.5
3,072,563	+		GFF3008	0.32	+0.3
3,072,566	-		GFF3008	0.33	-1.0
3,072,571	-		GFF3008	0.35	-0.5
3,072,574	+		GFF3008	0.36	-0.2
3,072,582	-		GFF3008	0.39	-1.4
3,072,582	-		GFF3008	0.39	-0.8
3,072,582	-		GFF3008	0.39	+1.0
3,072,607	+		GFF3008	0.48	-0.5
3,072,607	+		GFF3008	0.48	+0.6
3,072,607	+		GFF3008	0.48	-0.8
3,072,607	+		GFF3008	0.48	+1.3
3,072,614	+		GFF3008	0.51	-1.9
3,072,616	+		GFF3008	0.51	-0.9
3,072,632	-		GFF3008	0.57	-0.9
3,072,643	+		GFF3008	0.61	-0.1
3,072,645	-		GFF3008	0.62	+0.6
3,072,669	+		GFF3008	0.71	+0.2
3,072,671	-		GFF3008	0.72	+0.8
3,072,676	+		GFF3008	0.74	-0.5
3,072,676	+		GFF3008	0.74	-0.3
3,072,677	-		GFF3008	0.74	-0.1
3,072,684	-		GFF3008	0.77	+0.4
3,072,684	-		GFF3008	0.77	-1.8
3,072,713	+		GFF3008	0.87	+1.0
3,072,735	+				-2.3
3,072,737	+				-1.6
3,072,742	+				-0.1
3,072,743	-				-0.8
3,072,746	+				-2.1
3,072,746	+				-0.4
3,072,752	+				-0.9
3,072,760	-				-1.4
3,072,829	-				-2.5
3,072,846	+				-0.9
3,072,846	+				-1.2
3,072,846	+				+0.6
3,072,854	-				+0.6
3,072,856	-				+0.4
3,072,868	+				-0.6
3,072,870	+				+0.8
3,072,876	-				-0.1
3,072,876	-				-2.0
3,072,904	-		GFF3009	0.16	-0.5
3,072,904	-		GFF3009	0.16	-0.3
3,072,904	-		GFF3009	0.16	-1.7
3,072,904	-		GFF3009	0.16	-1.8
3,072,904	-		GFF3009	0.16	-0.2
3,072,904	-		GFF3009	0.16	-0.0
3,072,904	-		GFF3009	0.16	-1.0
3,072,913	+		GFF3009	0.19	+0.1
3,072,923	+		GFF3009	0.22	-1.5
3,072,923	+		GFF3009	0.22	-0.4
3,072,923	+		GFF3009	0.22	+1.6
3,072,923	+		GFF3009	0.22	-1.1
3,072,929	-		GFF3009	0.24	-0.7
3,072,931	-		GFF3009	0.25	-0.7
3,072,945	+		GFF3009	0.29	-0.0
3,072,979	-		GFF3009	0.40	-0.2
3,072,979	-		GFF3009	0.40	-0.9
3,072,996	-		GFF3009	0.45	+0.5
3,072,999	+		GFF3009	0.46	-1.5
3,072,999	+		GFF3009	0.46	-0.7
3,073,007	-		GFF3009	0.49	-0.5
3,073,017	+		GFF3009	0.52	-1.8
3,073,023	+		GFF3009	0.54	-0.2
3,073,029	-		GFF3009	0.56	-1.1
3,073,031	-		GFF3009	0.57	-0.8
3,073,048	-		GFF3009	0.62	+0.8
3,073,057	+		GFF3009	0.65	-0.0
3,073,057	+		GFF3009	0.65	-0.4
3,073,059	+		GFF3009	0.65	-1.8
3,073,059	+		GFF3009	0.65	-1.3
3,073,065	-		GFF3009	0.67	+0.0
3,073,065	-		GFF3009	0.67	-1.1
3,073,065	-		GFF3009	0.67	+1.1
3,073,068	+		GFF3009	0.68	-0.0
3,073,073	+		GFF3009	0.70	+0.8
3,073,076	-		GFF3009	0.71	-2.2
3,073,139	-				-3.0
3,073,158	+				-1.6
3,073,158	+				-1.5
3,073,166	-				-0.6
3,073,208	-				-2.2
3,073,208	-				-0.7
3,073,230	-				-0.5
3,073,235	-				-1.6
3,073,251	+				-1.5
3,073,255	+				-2.8
3,073,263	-				-0.5
3,073,268	-				-0.5
3,073,274	+				-0.5
3,073,279	+				-2.2
3,073,283	-				+0.2
3,073,285	+				-2.3
3,073,285	+				-0.8
3,073,285	+				-0.9
3,073,285	+				-0.7
3,073,285	+				-1.7
3,073,293	-				+0.8
3,073,301	+				+0.1
3,073,310	+				+0.0
3,073,310	+				+0.5
3,073,328	+				-2.1
3,073,328	+				-1.2
3,073,328	+				-1.0
3,073,328	+				+0.3
3,073,328	+				-1.6
3,073,328	+				-0.7
3,073,328	+				-0.0
3,073,328	+				-2.5
3,073,328	+				-0.2
3,073,328	+				+0.3
3,073,328	+				+0.7
3,073,331	-				-1.0
3,073,336	-				-0.6
3,073,336	-				-0.6
3,073,336	-				-1.0
3,073,336	-				-0.4
3,073,336	-				+1.1
3,073,336	-				+0.7
3,073,336	-				-1.8
3,073,336	-				-0.3
3,073,336	-				-0.3
3,073,338	+				+0.7
3,073,338	+				-2.7
3,073,341	-				-0.6
3,073,343	+				-0.6
3,073,346	-				-1.9
3,073,346	-				-0.5
3,073,346	-				-0.0
3,073,348	+				-0.0
3,073,354	+				-2.1
3,073,356	-				-1.1
3,073,370	-				-0.5
3,073,380	-				+0.1
3,073,383	+				-1.9
3,073,391	-				+0.9
3,073,409	+				-1.7
3,073,417	-				-0.8
3,073,422	+				-0.7
3,073,440	+				-0.5
3,073,440	+				+1.1
3,073,440	+				+0.7
3,073,445	+				+1.1
3,073,445	+				-0.8
3,073,448	-		GFF3010	0.10	-1.5
3,073,460	+		GFF3010	0.11	-0.7
3,073,460	+		GFF3010	0.11	-1.9
3,073,486	+		GFF3010	0.12	+1.2
3,073,495	+		GFF3010	0.12	-0.2
3,073,519	+		GFF3010	0.13	-0.1
3,073,524	+		GFF3010	0.13	+0.8
3,073,527	-		GFF3010	0.14	+0.1
3,073,529	+		GFF3010	0.14	+0.1
3,073,537	-		GFF3010	0.14	-0.2
3,073,543	+		GFF3010	0.14	-0.2
3,073,547	-		GFF3010	0.15	-2.2
3,073,552	+		GFF3010	0.15	-0.5
3,073,565	-		GFF3010	0.15	+0.7
3,073,567	+		GFF3010	0.15	-0.8
3,073,567	+		GFF3010	0.15	-0.4
3,073,567	+		GFF3010	0.15	-1.9
3,073,625	+		GFF3010	0.18	+1.3
3,073,628	-		GFF3010	0.18	-2.4
3,073,707	-		GFF3010	0.22	-0.5
3,073,719	-		GFF3010	0.22	-0.4
3,073,722	+		GFF3010	0.23	-0.1
3,073,722	+		GFF3010	0.23	+1.0
3,073,735	-		GFF3010	0.23	-0.9