Strain Fitness in Sphingobium sp. HT1-2 around GFF2979

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,033,677	-		GFF2978	0.32	-0.2
3,033,701	+		GFF2978	0.34	-1.5
3,033,701	+		GFF2978	0.34	+0.4
3,033,701	+		GFF2978	0.34	+0.2
3,033,701	+		GFF2978	0.34	+0.2
3,033,701	+		GFF2978	0.34	+0.1
3,033,709	-		GFF2978	0.34	-1.6
3,033,721	+		GFF2978	0.35	+0.3
3,033,741	+		GFF2978	0.37	-0.7
3,033,742	-		GFF2978	0.37	+0.8
3,033,749	+		GFF2978	0.37	-0.7
3,033,757	-		GFF2978	0.38	-0.1
3,033,757	-		GFF2978	0.38	+0.8
3,033,761	+		GFF2978	0.38	-1.6
3,033,779	+		GFF2978	0.39	-2.2
3,033,807	+		GFF2978	0.41	+0.3
3,033,807	+		GFF2978	0.41	-2.2
3,033,847	-		GFF2978	0.44	-1.1
3,033,850	+		GFF2978	0.44	-0.3
3,033,850	+		GFF2978	0.44	+0.4
3,033,855	+		GFF2978	0.45	-0.9
3,033,858	-		GFF2978	0.45	-0.3
3,033,873	+		GFF2978	0.46	-0.2
3,033,878	+		GFF2978	0.46	+0.8
3,033,878	+		GFF2978	0.46	+0.3
3,033,881	-		GFF2978	0.46	-0.6
3,033,889	+		GFF2978	0.47	+0.7
3,033,891	+		GFF2978	0.47	-0.0
3,033,897	-		GFF2978	0.48	-0.6
3,033,899	-		GFF2978	0.48	-0.1
3,033,958	+		GFF2978	0.52	-0.0
3,033,958	+		GFF2978	0.52	+0.5
3,033,958	+		GFF2978	0.52	-0.5
3,033,958	+		GFF2978	0.52	+0.5
3,033,958	+		GFF2978	0.52	-1.7
3,033,966	-		GFF2978	0.53	-0.7
3,033,966	-		GFF2978	0.53	+1.3
3,033,966	-		GFF2978	0.53	+0.4
3,033,966	-		GFF2978	0.53	+0.6
3,033,966	-		GFF2978	0.53	+1.2
3,033,989	+		GFF2978	0.54	-0.1
3,033,995	+		GFF2978	0.55	-0.0
3,033,998	-		GFF2978	0.55	+0.9
3,034,000	+		GFF2978	0.55	-0.5
3,034,000	+		GFF2978	0.55	-0.2
3,034,002	-		GFF2978	0.55	-2.6
3,034,003	-		GFF2978	0.55	+0.3
3,034,008	-		GFF2978	0.56	-0.1
3,034,008	-		GFF2978	0.56	-0.9
3,034,008	-		GFF2978	0.56	-0.9
3,034,008	-		GFF2978	0.56	+1.1
3,034,008	-		GFF2978	0.56	+0.6
3,034,008	-		GFF2978	0.56	-1.3
3,034,013	-		GFF2978	0.56	-1.4
3,034,035	+		GFF2978	0.57	-0.4
3,034,037	-		GFF2978	0.58	-0.2
3,034,059	+		GFF2978	0.59	-2.1
3,034,065	+		GFF2978	0.60	+0.5
3,034,073	+		GFF2978	0.60	-0.7
3,034,073	+		GFF2978	0.60	+1.5
3,034,155	+		GFF2978	0.66	-0.9
3,034,155	+		GFF2978	0.66	+0.6
3,034,155	+		GFF2978	0.66	-0.7
3,034,159	+		GFF2978	0.66	-2.1
3,034,163	-		GFF2978	0.67	-0.2
3,034,185	-		GFF2978	0.68	-0.8
3,034,199	-		GFF2978	0.69	-0.5
3,034,202	-		GFF2978	0.69	+0.3
3,034,232	-		GFF2978	0.71	-0.1
3,034,232	-		GFF2978	0.71	-1.0
3,034,261	+		GFF2978	0.73	-1.7
3,034,263	-		GFF2978	0.74	-0.0
3,034,269	-		GFF2978	0.74	+1.3
3,034,345	+		GFF2978	0.79	+0.6
3,034,350	+		GFF2978	0.80	-0.0
3,034,355	+		GFF2978	0.80	-1.9
3,034,363	-		GFF2978	0.81	-0.7
3,034,385	+		GFF2978	0.82	-1.5
3,034,390	+		GFF2978	0.83	+0.8
3,034,393	-		GFF2978	0.83	-1.6
3,034,398	-		GFF2978	0.83	-1.7
3,034,441	+		GFF2978	0.86	-1.5
3,034,441	+		GFF2978	0.86	+0.3
3,034,446	+		GFF2978	0.87	-1.2
3,034,455	+		GFF2978	0.87	+0.1
3,034,455	+		GFF2978	0.87	-1.5
3,034,460	+		GFF2978	0.88	-0.2
3,034,463	-		GFF2978	0.88	+0.6
3,034,463	-		GFF2978	0.88	+0.2
3,034,465	+		GFF2978	0.88	+0.2
3,034,465	+		GFF2978	0.88	+0.3
3,034,465	+		GFF2978	0.88	+0.4
3,034,465	+		GFF2978	0.88	+1.2
3,034,465	+		GFF2978	0.88	+0.3
3,034,465	+		GFF2978	0.88	+1.1
3,034,473	-		GFF2978	0.89	-0.4
3,034,473	-		GFF2978	0.89	+0.3
3,034,473	-		GFF2978	0.89	-2.2
3,034,473	-		GFF2978	0.89	-0.5
3,034,473	-		GFF2978	0.89	-0.2
3,034,490	+		GFF2978	0.90	-2.4
3,034,493	-				+0.2
3,034,511	-				-0.3
3,034,534	+				+0.8
3,034,534	+				-2.1
3,034,538	-				-1.3
3,034,550	+				-1.9
3,034,575	-				-1.2
3,034,578	+				-0.1
3,034,578	+				-0.6
3,034,587	+				-1.1
3,034,588	+				-0.6
3,034,592	+				-0.1
3,034,592	+				-1.7
3,034,592	+				+0.6
3,034,595	-				+0.1
3,034,597	+				+0.2
3,034,600	-				-0.8
3,034,605	-				-0.8
3,034,613	-				+0.8
3,034,624	-				-1.7
3,034,689	+				-0.8
3,034,705	+				-0.8
3,034,742	+		GFF2979	0.11	-0.0
3,034,748	-		GFF2979	0.12	-0.0
3,034,750	+		GFF2979	0.13	-0.9
3,034,755	+		GFF2979	0.14	+0.2
3,034,758	-		GFF2979	0.14	-0.6
3,034,760	+		GFF2979	0.14	-0.2
3,034,760	+		GFF2979	0.14	-0.8
3,034,821	-		GFF2979	0.25	-1.9
3,034,824	+		GFF2979	0.25	-1.6
3,034,842	-		GFF2979	0.28	-1.2
3,034,845	+		GFF2979	0.29	-0.8
3,034,863	-		GFF2979	0.32	+0.2
3,034,867	+		GFF2979	0.32	-1.8
3,034,910	-		GFF2979	0.40	-0.6
3,034,928	+		GFF2979	0.43	-0.8
3,034,928	+		GFF2979	0.43	-1.1
3,034,936	-		GFF2979	0.44	-1.1
3,034,951	+		GFF2979	0.47	-0.4
3,034,952	-		GFF2979	0.47	+0.9
3,034,953	+		GFF2979	0.47	+0.6
3,034,959	-		GFF2979	0.48	-0.6
3,034,959	-		GFF2979	0.48	-0.0
3,034,972	+		GFF2979	0.50	-0.6
3,034,997	+		GFF2979	0.54	-0.4
3,034,997	+		GFF2979	0.54	-1.0
3,034,997	+		GFF2979	0.54	-0.5
3,035,004	+		GFF2979	0.56	-0.2
3,035,005	-		GFF2979	0.56	-0.5
3,035,005	-		GFF2979	0.56	+0.6
3,035,005	-		GFF2979	0.56	+0.3
3,035,005	-		GFF2979	0.56	-0.2
3,035,005	-		GFF2979	0.56	-1.0
3,035,021	+		GFF2979	0.58	+0.4
3,035,026	+		GFF2979	0.59	-0.7
3,035,026	+		GFF2979	0.59	-1.4
3,035,026	+		GFF2979	0.59	-0.4
3,035,026	+		GFF2979	0.59	-0.2
3,035,029	-		GFF2979	0.60	-1.3
3,035,031	+		GFF2979	0.60	-0.4
3,035,034	-		GFF2979	0.61	+0.2
3,035,034	-		GFF2979	0.61	-0.6
3,035,054	+		GFF2979	0.64	+0.6
3,035,054	+		GFF2979	0.64	-0.2
3,035,054	+		GFF2979	0.64	+0.5
3,035,062	-		GFF2979	0.65	-0.1
3,035,062	-		GFF2979	0.65	-1.2
3,035,072	+		GFF2979	0.67	-1.1
3,035,072	+		GFF2979	0.67	-0.7
3,035,077	+		GFF2979	0.68	+0.7
3,035,082	+		GFF2979	0.69	-2.3
3,035,090	+		GFF2979	0.70	+0.8
3,035,090	-		GFF2979	0.70	-0.4
3,035,098	-		GFF2979	0.71	+0.6
3,035,104	+		GFF2979	0.72	-1.4
3,035,104	+		GFF2979	0.72	-0.8
3,035,112	-		GFF2979	0.74	+0.5
3,035,112	-		GFF2979	0.74	+0.2
3,035,126	-		GFF2979	0.76	-2.1
3,035,146	+		GFF2979	0.79	-0.5
3,035,146	+		GFF2979	0.79	-0.5
3,035,146	+		GFF2979	0.79	-0.5
3,035,146	+		GFF2979	0.79	+0.7
3,035,146	+		GFF2979	0.79	-0.9
3,035,146	+		GFF2979	0.79	+0.4
3,035,146	+		GFF2979	0.79	+0.4
3,035,151	+		GFF2979	0.80	+0.3
3,035,154	-		GFF2979	0.81	+0.6
3,035,154	-		GFF2979	0.81	-0.0
3,035,154	-		GFF2979	0.81	-0.1
3,035,154	-		GFF2979	0.81	+0.0
3,035,174	+		GFF2979	0.84	-0.0
3,035,178	-		GFF2979	0.85	-2.9
3,035,187	+		GFF2979	0.86	-0.2
3,035,204	-		GFF2979	0.89	-0.4
3,035,214	-				+1.0
3,035,246	+				+0.2
3,035,255	+				-0.2
3,035,263	-				-0.2
3,035,263	-				-0.6
3,035,274	-				-1.1
3,035,277	+				-2.1
3,035,285	-				+0.5
3,035,309	-				-0.8
3,035,339	-				-0.5
3,035,384	+				-2.0
3,035,400	+				-1.1
3,035,402	-				+0.3
3,035,402	-				+0.1
3,035,404	+				-1.2
3,035,411	-		GFF2980	0.12	-0.4
3,035,444	+		GFF2980	0.32	-0.1
3,035,452	-		GFF2980	0.36	+0.0
3,035,472	-		GFF2980	0.48	+1.0
3,035,472	-		GFF2980	0.48	-0.8
3,035,488	-		GFF2980	0.58	-1.6
3,035,489	+		GFF2980	0.58	+0.2
3,035,498	-		GFF2980	0.64	+1.1
3,035,502	-		GFF2980	0.66	-0.7
3,035,502	-		GFF2980	0.66	-0.1
3,035,504	+		GFF2980	0.67	+0.1
3,035,533	+		GFF2980	0.85	+0.7
3,035,534	-		GFF2980	0.85	-0.6
3,035,541	-		GFF2980	0.89	+0.6
3,035,543	+				+0.3
3,035,547	-				+0.5
3,035,553	+				+0.8
3,035,621	+				-1.4
3,035,626	+				+1.6
3,035,626	+				-0.8
3,035,634	-				-2.1
3,035,665	-		GFF2981	0.15	+0.6
3,035,699	-		GFF2981	0.28	+1.0
3,035,707	-		GFF2981	0.31	-0.2
3,035,712	-		GFF2981	0.33	-0.2
3,035,731	-		GFF2981	0.40	-1.0
3,035,734	+		GFF2981	0.41	+0.6
3,035,770	-		GFF2981	0.55	+0.2
3,035,786	+		GFF2981	0.61	+0.0
3,035,786	+		GFF2981	0.61	-1.7
3,035,788	-		GFF2981	0.62	+0.3
3,035,792	+		GFF2981	0.64	-0.4
3,035,792	+		GFF2981	0.64	-0.7
3,035,798	+		GFF2981	0.66	+0.8
3,035,820	-		GFF2981	0.74	-0.2
3,035,833	-		GFF2981	0.79	+0.2
3,035,833	-		GFF2981	0.79	+0.3
3,035,839	-		GFF2981	0.82	-1.6
3,035,851	+		GFF2981	0.86	+1.0
3,035,853	+		GFF2981	0.87	+0.4
3,035,863	+				-0.2
3,035,863	+				-0.3
3,035,869	-				+0.8
3,035,871	+				-0.9
3,035,871	-				-0.2
3,035,871	-				-0.1
3,035,871	-				-0.4
3,035,879	-				-1.2
3,035,879	-				+0.6
3,035,881	+				-1.0
3,035,891	+				+0.3
3,035,893	-				+0.7
3,035,896	+				-0.1
3,035,896	+				+0.2
3,035,903	+				-2.0
3,035,903	+				-0.5
3,035,904	-				-1.1
3,035,904	-				+0.2
3,035,910	+		GFF2982	0.12	-0.3
3,035,915	+		GFF2982	0.18	+0.1
3,035,918	-		GFF2982	0.21	-0.7
3,035,923	-		GFF2982	0.27	-0.4
3,035,946	+		GFF2982	0.52	+1.2
3,035,973	+		GFF2982	0.82	-0.3
3,035,982	+				+0.8
3,035,990	-				-0.6
3,035,990	-				+0.9
3,035,997	+				+1.1
3,036,005	-				+0.3
3,036,005	-				-0.4
3,036,005	-				-0.1
3,036,007	+				-0.9
3,036,063	+				-2.1
3,036,071	-				-0.6
3,036,078	-				-1.5
3,036,079	-				-0.5
3,036,086	+				-1.5
3,036,094	-				-1.9
3,036,094	-				+0.4
3,036,119	-				+0.6
3,036,130	-				-0.6
3,036,131	-				+0.8
3,036,131	-				-0.4
3,036,136	+				-0.4
3,036,137	+				+1.2
3,036,144	+				-0.7
3,036,144	+				-1.4
3,036,152	-				+0.2
3,036,152	-				-1.0
3,036,156	+				+0.6
3,036,164	-				+0.5
3,036,164	-				+1.5
3,036,178	+		GFF2983	0.10	-0.3
3,036,178	+		GFF2983	0.10	-1.3
3,036,178	+		GFF2983	0.10	+0.2
3,036,178	+		GFF2983	0.10	-0.6
3,036,178	+		GFF2983	0.10	+1.1
3,036,183	+		GFF2983	0.11	-2.2
3,036,185	+		GFF2983	0.11	-1.6
3,036,186	-		GFF2983	0.11	-0.3
3,036,186	-		GFF2983	0.11	+0.3
3,036,186	-		GFF2983	0.11	+0.5
3,036,186	-		GFF2983	0.11	+0.1
3,036,202	+		GFF2983	0.12	+0.5
3,036,205	-		GFF2983	0.12	+0.6
3,036,210	-		GFF2983	0.12	-0.2
3,036,210	-		GFF2983	0.12	-2.0
3,036,216	+		GFF2983	0.13	+1.0
3,036,224	-		GFF2983	0.13	+0.7
3,036,234	+		GFF2983	0.14	-1.2
3,036,234	-		GFF2983	0.14	+1.3
3,036,242	-		GFF2983	0.14	-0.5
3,036,243	-		GFF2983	0.14	-2.0
3,036,245	+		GFF2983	0.14	-0.3
3,036,245	+		GFF2983	0.14	+0.0
3,036,250	+		GFF2983	0.15	+0.5
3,036,253	-		GFF2983	0.15	+0.1
3,036,253	-		GFF2983	0.15	-1.1
3,036,257	+		GFF2983	0.15	+0.3
3,036,259	+		GFF2983	0.15	+1.1