Strain Fitness in Sphingobium sp. HT1-2 around GFF2974

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,026,200	-		GFF2971	0.42	+0.3
3,026,211	+		GFF2971	0.43	-0.5
3,026,211	+		GFF2971	0.43	-0.4
3,026,219	-		GFF2971	0.44	+0.3
3,026,236	+		GFF2971	0.46	+0.4
3,026,240	+		GFF2971	0.47	+0.7
3,026,240	-		GFF2971	0.47	-1.7
3,026,248	-		GFF2971	0.48	-0.5
3,026,248	-		GFF2971	0.48	-0.5
3,026,248	-		GFF2971	0.48	-0.6
3,026,254	-		GFF2971	0.48	+1.1
3,026,255	-		GFF2971	0.49	+1.3
3,026,255	-		GFF2971	0.49	+0.6
3,026,265	+		GFF2971	0.50	-0.2
3,026,273	-		GFF2971	0.51	-2.3
3,026,286	+		GFF2971	0.52	+0.6
3,026,286	+		GFF2971	0.52	+0.6
3,026,294	-		GFF2971	0.53	-0.5
3,026,305	+		GFF2971	0.55	+0.2
3,026,305	+		GFF2971	0.55	-0.5
3,026,305	+		GFF2971	0.55	-0.1
3,026,313	-		GFF2971	0.56	+1.3
3,026,315	-		GFF2971	0.56	+0.2
3,026,333	+		GFF2971	0.58	-1.0
3,026,341	-		GFF2971	0.59	+0.6
3,026,341	-		GFF2971	0.59	-0.8
3,026,341	-		GFF2971	0.59	-0.7
3,026,341	-		GFF2971	0.59	-2.1
3,026,344	+		GFF2971	0.60	+1.3
3,026,353	+		GFF2971	0.61	+1.0
3,026,354	+		GFF2971	0.61	-0.6
3,026,354	+		GFF2971	0.61	-0.8
3,026,361	-		GFF2971	0.62	+0.8
3,026,362	-		GFF2971	0.62	+0.7
3,026,362	-		GFF2971	0.62	-1.1
3,026,397	+		GFF2971	0.67	-1.7
3,026,405	-		GFF2971	0.68	-0.1
3,026,405	-		GFF2971	0.68	-0.1
3,026,405	-		GFF2971	0.68	-0.9
3,026,405	-		GFF2971	0.68	+0.3
3,026,454	-		GFF2971	0.74	-1.5
3,026,462	-		GFF2971	0.75	-1.2
3,026,467	-		GFF2971	0.75	-0.5
3,026,467	-		GFF2971	0.75	+0.6
3,026,503	+		GFF2971	0.80	-1.1
3,026,513	+		GFF2971	0.81	+1.3
3,026,513	+		GFF2971	0.81	-2.0
3,026,515	+		GFF2971	0.81	+0.6
3,026,518	+		GFF2971	0.82	+0.2
3,026,519	+		GFF2971	0.82	-1.2
3,026,523	+		GFF2971	0.83	+0.4
3,026,523	+		GFF2971	0.83	-0.6
3,026,523	+		GFF2971	0.83	+0.3
3,026,523	+		GFF2971	0.83	-2.7
3,026,526	-		GFF2971	0.83	-2.5
3,026,529	+		GFF2971	0.83	+0.7
3,026,529	+		GFF2971	0.83	-0.9
3,026,529	+		GFF2971	0.83	+0.4
3,026,529	+		GFF2971	0.83	-0.4
3,026,531	-		GFF2971	0.84	-1.7
3,026,531	-		GFF2971	0.84	+0.6
3,026,531	-		GFF2971	0.84	-2.6
3,026,537	-		GFF2971	0.84	+0.1
3,026,537	-		GFF2971	0.84	+0.2
3,026,537	-		GFF2971	0.84	+1.0
3,026,537	-		GFF2971	0.84	+1.0
3,026,537	-		GFF2971	0.84	-1.1
3,026,552	-		GFF2971	0.86	-1.9
3,026,558	+		GFF2971	0.87	+0.2
3,026,558	+		GFF2971	0.87	+0.1
3,026,558	-		GFF2971	0.87	-2.2
3,026,559	-		GFF2971	0.87	+0.1
3,026,563	+		GFF2971	0.88	-0.1
3,026,563	+		GFF2971	0.88	-0.8
3,026,563	+		GFF2971	0.88	+0.7
3,026,563	+		GFF2971	0.88	-1.2
3,026,563	+		GFF2971	0.88	+0.5
3,026,563	+		GFF2971	0.88	-0.5
3,026,563	+		GFF2971	0.88	+0.1
3,026,563	+		GFF2971	0.88	-0.5
3,026,563	+		GFF2971	0.88	+0.4
3,026,563	+		GFF2971	0.88	-0.2
3,026,563	+		GFF2971	0.88	+0.4
3,026,563	+		GFF2971	0.88	+0.2
3,026,563	+		GFF2971	0.88	-0.2
3,026,563	+		GFF2971	0.88	+1.7
3,026,563	+		GFF2971	0.88	+0.3
3,026,566	-		GFF2971	0.88	-2.5
3,026,571	-		GFF2971	0.89	+0.2
3,026,571	-		GFF2971	0.89	+0.4
3,026,571	-		GFF2971	0.89	+0.4
3,026,571	-		GFF2971	0.89	-0.0
3,026,571	-		GFF2971	0.89	-1.8
3,026,571	-		GFF2971	0.89	+0.0
3,026,571	-		GFF2971	0.89	+0.3
3,026,571	-		GFF2971	0.89	+0.0
3,026,571	-		GFF2971	0.89	+0.9
3,026,590	+				-1.2
3,026,593	-				-0.5
3,026,594	+				+0.8
3,026,596	+				+0.2
3,026,597	-				-1.5
3,026,597	-				-0.3
3,026,598	-				-0.7
3,026,598	-				-0.6
3,026,598	-				-0.9
3,026,619	+				-1.1
3,026,627	-				+0.2
3,026,630	+				-0.6
3,026,630	+				+0.0
3,026,642	+				+1.6
3,026,650	-				-0.2
3,026,655	-				+0.2
3,026,656	+				-0.8
3,026,657	+				+0.3
3,026,665	+				-0.2
3,026,673	-				+0.0
3,026,675	+				-2.7
3,026,675	+				-1.5
3,026,675	+				-1.6
3,026,675	+				-0.3
3,026,675	+				-0.2
3,026,675	+				+0.4
3,026,683	-				+0.2
3,026,683	-				+0.5
3,026,702	+				+0.0
3,026,730	-				-2.1
3,026,791	+				-1.8
3,026,791	+				+0.4
3,026,794	-				-0.2
3,026,799	-				+0.6
3,026,799	-				-0.2
3,026,836	+		GFF2972	0.27	+1.6
3,026,840	+		GFF2972	0.29	-0.3
3,026,841	+		GFF2972	0.30	-1.2
3,026,841	+		GFF2972	0.30	+0.1
3,026,841	+		GFF2972	0.30	+0.9
3,026,841	+		GFF2972	0.30	+0.5
3,026,841	+		GFF2972	0.30	-0.4
3,026,841	+		GFF2972	0.30	+1.0
3,026,841	+		GFF2972	0.30	+0.4
3,026,849	-		GFF2972	0.35	-2.2
3,026,849	-		GFF2972	0.35	-0.4
3,026,849	-		GFF2972	0.35	-1.2
3,026,849	-		GFF2972	0.35	+0.8
3,026,849	-		GFF2972	0.35	-1.4
3,026,849	-		GFF2972	0.35	+0.5
3,026,849	-		GFF2972	0.35	+0.8
3,026,849	-		GFF2972	0.35	-0.7
3,026,849	-		GFF2972	0.35	-0.4
3,026,851	+		GFF2972	0.36	-0.9
3,026,851	+		GFF2972	0.36	+0.8
3,026,851	+		GFF2972	0.36	+0.2
3,026,851	+		GFF2972	0.36	-0.9
3,026,858	+		GFF2972	0.40	-0.0
3,026,859	-		GFF2972	0.41	-0.4
3,026,859	-		GFF2972	0.41	-2.0
3,026,865	+		GFF2972	0.44	-0.1
3,026,865	+		GFF2972	0.44	+0.4
3,026,873	-		GFF2972	0.49	+0.7
3,026,876	+		GFF2972	0.51	-0.6
3,026,882	+		GFF2972	0.55	+0.2
3,026,884	-		GFF2972	0.56	+0.5
3,026,891	+		GFF2972	0.60	-0.2
3,026,905	+		GFF2972	0.68	-0.3
3,026,907	+		GFF2972	0.70	+1.1
3,026,951	+				-0.6
3,027,149	+				-0.2
3,027,152	-				+0.3
3,027,157	-				+1.4
3,027,159	+				+0.8
3,027,159	+				+0.4
3,027,159	+				+1.3
3,027,159	+				-0.6
3,027,164	+				+0.4
3,027,167	-				-1.0
3,027,167	-				-2.4
3,027,167	-				+0.5
3,027,171	+				+0.0
3,027,192	+				-2.0
3,027,199	+				+0.3
3,027,200	-				-1.2
3,027,207	+				+0.6
3,027,224	-				+0.5
3,027,227	-				-1.4
3,027,251	+				-0.2
3,027,253	+				+0.0
3,027,253	+				+0.1
3,027,257	+				-1.7
3,027,446	-		GFF2974	0.39	-1.4
3,027,450	-		GFF2974	0.39	-1.0
3,027,808	+				+0.9
3,027,826	-				+1.0
3,027,833	-				+1.1
3,027,929	+				-1.5
3,027,961	-				+0.3
3,027,982	+				+0.2
3,027,982	+				+0.8
3,027,986	+				-1.3
3,027,987	+				-1.2
3,027,994	-				-2.0
3,027,995	-				-0.5
3,028,028	+				-0.4
3,028,028	+				+0.2
3,028,028	+				-0.2
3,028,028	+				+0.1
3,028,036	-				-0.9
3,028,036	-				-0.2
3,028,036	-				+0.6
3,028,036	-				-0.8
3,028,036	-				+0.2
3,028,082	-				+1.4
3,028,090	+				-0.0
3,028,101	+				+1.3
3,028,110	+				-0.5
3,028,110	+				-0.5
3,028,118	-				-0.8
3,028,118	-				-2.2
3,028,118	-				+0.0
3,028,118	-				-1.0
3,028,118	-				-1.4
3,028,118	-				-0.4
3,028,135	+				+0.9
3,028,143	-				+0.2
3,028,207	+				-2.3
3,028,214	-				-1.2
3,028,214	-				-0.9
3,028,214	-				-0.3
3,028,224	+				-1.1
3,028,227	-				-2.5
3,028,229	+				-1.6
3,028,229	+				-0.4
3,028,229	+				-1.5
3,028,229	+				+0.2
3,028,232	-				+1.1
3,028,232	-				-1.0
3,028,237	-				-0.9
3,028,237	-				+0.7
3,028,248	-				+0.5
3,028,260	-				+0.3
3,028,264	-				-2.0
3,028,266	+				-0.8
3,028,294	+		GFF2975	0.15	-0.2
3,028,300	+		GFF2975	0.16	+0.2
3,028,321	-		GFF2975	0.21	-0.8
3,028,331	-		GFF2975	0.24	-0.4
3,028,331	-		GFF2975	0.24	+0.8
3,028,371	+		GFF2975	0.33	+0.3
3,028,373	-		GFF2975	0.34	+0.2
3,028,376	+		GFF2975	0.35	-0.4
3,028,384	+		GFF2975	0.36	+0.3
3,028,384	+		GFF2975	0.36	+0.4
3,028,384	-		GFF2975	0.36	+0.2
3,028,384	-		GFF2975	0.36	+0.3
3,028,392	-		GFF2975	0.38	-1.2
3,028,408	+		GFF2975	0.42	+1.0
3,028,416	+		GFF2975	0.44	-1.6
3,028,416	+		GFF2975	0.44	-2.8
3,028,416	-		GFF2975	0.44	+0.2
3,028,416	-		GFF2975	0.44	-0.7
3,028,424	-		GFF2975	0.46	-0.4
3,028,425	+		GFF2975	0.46	-1.9
3,028,439	+		GFF2975	0.50	+0.1
3,028,452	+		GFF2975	0.53	+0.7
3,028,452	-		GFF2975	0.53	-0.1
3,028,458	+		GFF2975	0.54	+0.1
3,028,459	+		GFF2975	0.55	-0.2
3,028,462	-		GFF2975	0.55	+0.6
3,028,462	-		GFF2975	0.55	-0.7
3,028,464	+		GFF2975	0.56	+0.6
3,028,466	-		GFF2975	0.56	-1.5
3,028,466	-		GFF2975	0.56	+0.5
3,028,466	-		GFF2975	0.56	+0.1
3,028,467	-		GFF2975	0.57	-0.4
3,028,481	+		GFF2975	0.60	-0.5
3,028,488	+		GFF2975	0.62	-0.1
3,028,488	-		GFF2975	0.62	+1.1
3,028,516	+		GFF2975	0.68	-0.4
3,028,523	+		GFF2975	0.70	-1.3
3,028,523	+		GFF2975	0.70	-1.9
3,028,523	+		GFF2975	0.70	-1.8
3,028,523	+		GFF2975	0.70	-0.4
3,028,523	+		GFF2975	0.70	-0.5
3,028,523	+		GFF2975	0.70	-0.1
3,028,523	+		GFF2975	0.70	+0.2
3,028,523	+		GFF2975	0.70	-0.4
3,028,524	+		GFF2975	0.70	+0.4
3,028,531	-		GFF2975	0.72	-0.8
3,028,531	-		GFF2975	0.72	-0.9
3,028,531	-		GFF2975	0.72	-0.4
3,028,563	-		GFF2975	0.80	-0.5
3,028,579	-		GFF2975	0.84	+0.3
3,028,579	-		GFF2975	0.84	-0.7
3,028,594	-		GFF2975	0.87	-1.3
3,028,601	-		GFF2975	0.89	+0.2
3,028,607	+				-0.1
3,028,615	-				+0.1
3,028,626	+				-2.8
3,028,635	+				+1.1
3,028,635	+				+0.0
3,028,643	-				-0.6
3,028,675	-				-2.1
3,028,675	-				-0.9
3,028,675	-				-0.3
3,028,695	-				-0.8
3,028,704	+				-0.2
3,028,728	-				-0.5
3,028,737	-				-0.9
3,028,766	+				-1.2
3,028,766	+				+0.1
3,028,766	+				-0.1
3,028,774	-				-1.7
3,028,774	-				-2.0
3,028,774	-				+0.7
3,028,774	-				+0.2
3,028,777	+		GFF2976	0.10	+1.1
3,028,784	-		GFF2976	0.11	+0.1
3,028,785	-		GFF2976	0.11	-0.3
3,028,785	-		GFF2976	0.11	-0.4
3,028,803	+		GFF2976	0.12	-2.1
3,028,803	+		GFF2976	0.12	-0.6
3,028,808	+		GFF2976	0.13	+0.5
3,028,811	-		GFF2976	0.13	+0.4
3,028,816	-		GFF2976	0.13	-0.8
3,028,816	-		GFF2976	0.13	+1.4