Strain Fitness in Sphingobium sp. HT1-2 around GFF2933

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,005,150	+		GFF2932	0.46	-0.7
3,005,150	+		GFF2932	0.46	-0.5
3,005,150	+		GFF2932	0.46	+0.5
3,005,158	-		GFF2932	0.46	+0.1
3,005,158	-		GFF2932	0.46	-0.4
3,005,161	+		GFF2932	0.46	+0.8
3,005,169	+		GFF2932	0.47	+0.1
3,005,169	-		GFF2932	0.47	+0.6
3,005,169	-		GFF2932	0.47	-2.0
3,005,176	+		GFF2932	0.47	+0.2
3,005,178	+		GFF2932	0.47	+0.1
3,005,204	+		GFF2932	0.49	+0.9
3,005,207	+		GFF2932	0.49	-1.2
3,005,211	+		GFF2932	0.49	+0.0
3,005,211	+		GFF2932	0.49	-0.0
3,005,219	-		GFF2932	0.50	+0.1
3,005,237	-		GFF2932	0.51	+1.4
3,005,256	-		GFF2932	0.52	+1.1
3,005,259	-		GFF2932	0.52	-0.5
3,005,259	-		GFF2932	0.52	+0.1
3,005,276	+		GFF2932	0.53	+0.6
3,005,276	+		GFF2932	0.53	-1.5
3,005,282	+		GFF2932	0.53	-1.1
3,005,282	-		GFF2932	0.53	-1.5
3,005,284	+		GFF2932	0.54	-0.4
3,005,284	-		GFF2932	0.54	+0.4
3,005,284	-		GFF2932	0.54	-1.0
3,005,286	+		GFF2932	0.54	-1.0
3,005,286	+		GFF2932	0.54	-0.2
3,005,290	-		GFF2932	0.54	+0.9
3,005,294	-		GFF2932	0.54	-0.6
3,005,294	-		GFF2932	0.54	+1.2
3,005,294	-		GFF2932	0.54	-2.1
3,005,296	+		GFF2932	0.54	+1.0
3,005,296	+		GFF2932	0.54	-1.5
3,005,296	+		GFF2932	0.54	-0.2
3,005,296	+		GFF2932	0.54	-0.4
3,005,296	+		GFF2932	0.54	-0.4
3,005,296	+		GFF2932	0.54	-0.7
3,005,296	+		GFF2932	0.54	+0.4
3,005,296	+		GFF2932	0.54	+0.9
3,005,296	+		GFF2932	0.54	+0.1
3,005,304	-		GFF2932	0.55	-2.1
3,005,304	-		GFF2932	0.55	+0.7
3,005,304	-		GFF2932	0.55	-0.9
3,005,304	-		GFF2932	0.55	-2.2
3,005,304	-		GFF2932	0.55	+0.5
3,005,304	-		GFF2932	0.55	+0.3
3,005,304	-		GFF2932	0.55	-1.2
3,005,304	-		GFF2932	0.55	-2.2
3,005,304	-		GFF2932	0.55	-2.5
3,005,304	-		GFF2932	0.55	+0.8
3,005,304	-		GFF2932	0.55	+0.3
3,005,304	-		GFF2932	0.55	-0.5
3,005,304	-		GFF2932	0.55	-0.1
3,005,304	-		GFF2932	0.55	-1.2
3,005,306	+		GFF2932	0.55	-0.2
3,005,306	+		GFF2932	0.55	+0.5
3,005,306	+		GFF2932	0.55	+1.3
3,005,306	+		GFF2932	0.55	+0.1
3,005,306	+		GFF2932	0.55	-0.2
3,005,314	-		GFF2932	0.55	-1.4
3,005,314	-		GFF2932	0.55	+0.1
3,005,314	-		GFF2932	0.55	-1.1
3,005,314	-		GFF2932	0.55	+0.1
3,005,314	-		GFF2932	0.55	+1.0
3,005,314	-		GFF2932	0.55	-2.7
3,005,325	+		GFF2932	0.56	-1.2
3,005,367	-		GFF2932	0.59	-0.6
3,005,372	-		GFF2932	0.59	+0.1
3,005,383	-		GFF2932	0.60	+0.2
3,005,414	+		GFF2932	0.61	+0.1
3,005,430	-		GFF2932	0.62	-0.4
3,005,449	+		GFF2932	0.64	-0.5
3,005,450	-		GFF2932	0.64	-0.7
3,005,516	-		GFF2932	0.68	-0.9
3,005,523	-		GFF2932	0.68	+0.2
3,005,523	-		GFF2932	0.68	-2.5
3,005,527	+		GFF2932	0.68	-1.0
3,005,535	-		GFF2932	0.69	+0.4
3,005,556	+		GFF2932	0.70	-0.7
3,005,560	-		GFF2932	0.70	-0.6
3,005,562	+		GFF2932	0.70	+0.4
3,005,565	-		GFF2932	0.71	-0.2
3,005,566	-		GFF2932	0.71	+0.3
3,005,570	-		GFF2932	0.71	+0.4
3,005,589	+		GFF2932	0.72	-1.2
3,005,589	+		GFF2932	0.72	+0.2
3,005,589	+		GFF2932	0.72	+0.7
3,005,592	-		GFF2932	0.72	-1.4
3,005,594	+		GFF2932	0.72	+1.4
3,005,597	-		GFF2932	0.72	-1.8
3,005,635	-		GFF2932	0.75	-0.4
3,005,635	-		GFF2932	0.75	+0.2
3,005,637	+		GFF2932	0.75	+0.6
3,005,643	+		GFF2932	0.75	+1.6
3,005,645	-		GFF2932	0.75	+0.5
3,005,648	+		GFF2932	0.76	+1.0
3,005,661	-		GFF2932	0.76	-0.0
3,005,684	-		GFF2932	0.78	-1.2
3,005,710	+		GFF2932	0.79	+0.6
3,005,710	+		GFF2932	0.79	+0.7
3,005,710	+		GFF2932	0.79	+0.3
3,005,710	+		GFF2932	0.79	-0.7
3,005,710	+		GFF2932	0.79	+0.4
3,005,711	-		GFF2932	0.79	+0.3
3,005,711	-		GFF2932	0.79	+1.1
3,005,716	-		GFF2932	0.80	-0.6
3,005,718	-		GFF2932	0.80	+0.8
3,005,730	-		GFF2932	0.80	+0.1
3,005,762	-		GFF2932	0.82	-0.8
3,005,797	+		GFF2932	0.85	-2.2
3,005,825	+		GFF2932	0.86	-0.5
3,005,825	+		GFF2932	0.86	-1.8
3,005,825	+		GFF2932	0.86	-1.4
3,005,830	+		GFF2932	0.86	+1.6
3,005,833	-		GFF2932	0.87	-0.7
3,005,833	-		GFF2932	0.87	-0.2
3,005,836	+		GFF2932	0.87	-1.6
3,005,836	+		GFF2932	0.87	+0.0
3,005,844	+		GFF2932	0.87	-0.3
3,005,844	-		GFF2932	0.87	-2.2
3,005,844	-		GFF2932	0.87	-0.3
3,005,852	-		GFF2932	0.88	-2.6
3,005,854	-		GFF2932	0.88	-0.8
3,005,856	-		GFF2932	0.88	-0.6
3,005,858	+		GFF2932	0.88	+0.6
3,005,858	+		GFF2932	0.88	+0.6
3,005,866	-		GFF2932	0.89	+0.4
3,005,866	-		GFF2932	0.89	+0.5
3,005,870	+		GFF2932	0.89	-0.3
3,005,870	+		GFF2932	0.89	-0.5
3,005,873	+		GFF2932	0.89	-0.0
3,005,881	-		GFF2932	0.90	+0.4
3,005,920	+				+0.0
3,005,952	+				-1.7
3,005,956	-				-1.9
3,005,958	+				-1.4
3,005,961	-				+1.2
3,005,968	+				-1.4
3,005,971	-				+0.9
3,005,973	+				-1.7
3,005,973	+				-0.6
3,005,973	+				-0.2
3,005,976	-				-1.0
3,005,976	-				-0.7
3,006,011	-				-1.8
3,006,033	+				+0.3
3,006,038	+				-0.1
3,006,041	-				-0.7
3,006,043	+				-0.7
3,006,046	-				+0.5
3,006,046	-				-0.6
3,006,046	-				-0.3
3,006,053	+				-0.2
3,006,054	+				-1.7
3,006,055	+				+0.7
3,006,055	+				-1.5
3,006,057	+				-1.2
3,006,063	-				-0.5
3,006,063	-				+1.0
3,006,063	-				-1.2
3,006,063	-				-1.5
3,006,070	+				+0.0
3,006,070	+				-0.4
3,006,122	+				+0.7
3,006,130	-				-2.6
3,006,135	-				-0.6
3,006,158	+				+1.5
3,006,165	-				-0.7
3,006,166	-				+1.1
3,006,166	-				+0.8
3,006,189	+				-0.6
3,006,197	-		GFF2933	0.11	+0.5
3,006,240	+		GFF2933	0.17	+0.6
3,006,253	-		GFF2933	0.19	+0.4
3,006,253	-		GFF2933	0.19	+0.2
3,006,262	+		GFF2933	0.20	+1.0
3,006,263	+		GFF2933	0.21	-0.8
3,006,263	+		GFF2933	0.21	-1.2
3,006,263	-		GFF2933	0.21	-0.5
3,006,270	-		GFF2933	0.22	-0.2
3,006,287	-		GFF2933	0.24	+0.8
3,006,288	+		GFF2933	0.24	-2.0
3,006,288	+		GFF2933	0.24	-0.1
3,006,290	+		GFF2933	0.25	+0.1
3,006,290	+		GFF2933	0.25	-0.3
3,006,290	+		GFF2933	0.25	-0.1
3,006,290	+		GFF2933	0.25	-2.4
3,006,290	+		GFF2933	0.25	+1.1
3,006,290	+		GFF2933	0.25	+0.1
3,006,290	+		GFF2933	0.25	+2.2
3,006,290	+		GFF2933	0.25	+0.6
3,006,290	+		GFF2933	0.25	+0.0
3,006,290	+		GFF2933	0.25	+0.4
3,006,296	-		GFF2933	0.25	-1.2
3,006,298	-		GFF2933	0.26	+0.1
3,006,298	-		GFF2933	0.26	+0.1
3,006,298	-		GFF2933	0.26	+0.3
3,006,298	-		GFF2933	0.26	-0.9
3,006,298	-		GFF2933	0.26	-1.4
3,006,298	-		GFF2933	0.26	-0.0
3,006,298	-		GFF2933	0.26	-1.6
3,006,312	+		GFF2933	0.28	-0.1
3,006,314	+		GFF2933	0.28	+0.2
3,006,319	-		GFF2933	0.29	-2.6
3,006,327	+		GFF2933	0.30	-0.0
3,006,327	+		GFF2933	0.30	+0.1
3,006,327	+		GFF2933	0.30	-0.2
3,006,335	-		GFF2933	0.31	-0.2
3,006,356	-		GFF2933	0.34	-1.8
3,006,383	+		GFF2933	0.38	+0.6
3,006,391	-		GFF2933	0.40	+0.0
3,006,394	-		GFF2933	0.40	+0.9
3,006,420	+		GFF2933	0.44	-0.2
3,006,425	-		GFF2933	0.45	+0.4
3,006,444	+		GFF2933	0.47	+0.3
3,006,489	-		GFF2933	0.54	-0.8
3,006,507	-		GFF2933	0.57	-0.2
3,006,531	-		GFF2933	0.60	+0.8
3,006,597	+		GFF2933	0.70	+0.0
3,006,602	+		GFF2933	0.71	+1.0
3,006,623	+		GFF2933	0.74	-1.2
3,006,666	-		GFF2933	0.80	-0.6
3,006,676	-		GFF2933	0.82	-0.2
3,006,677	+		GFF2933	0.82	-0.8
3,006,683	+		GFF2933	0.83	-1.2
3,006,683	+		GFF2933	0.83	-0.1
3,006,691	-		GFF2933	0.84	-0.7
3,006,691	-		GFF2933	0.84	-2.6
3,006,691	-		GFF2933	0.84	+0.4
3,006,717	+		GFF2933	0.88	-1.9
3,006,727	+		GFF2933	0.89	-0.4
3,006,735	-				+1.1
3,006,735	-				-1.0
3,006,735	-				+1.2
3,006,736	+				-2.0
3,006,736	+				-0.7
3,006,741	+				+1.3
3,006,742	+				+0.1
3,006,744	-				+0.2
3,006,752	+				-0.1
3,006,770	-				-1.2
3,006,771	+				-0.2
3,006,771	+				+0.1
3,006,779	+				-0.0
3,006,779	+				-0.6
3,006,779	+				-1.9
3,006,799	+				-1.8
3,006,805	+				+0.1
3,006,828	+				-0.6
3,006,828	+				-0.4
3,006,828	-				+0.6
3,006,833	+				-1.7
3,006,841	-		GFF2934	0.11	-1.4
3,006,862	+		GFF2934	0.20	-1.2
3,006,862	+		GFF2934	0.20	+0.4
3,006,862	+		GFF2934	0.20	-1.8
3,006,901	-		GFF2934	0.37	+0.3
3,006,903	+		GFF2934	0.38	-0.6
3,006,909	+		GFF2934	0.40	-0.6
3,006,911	+		GFF2934	0.41	+0.0
3,006,929	-		GFF2934	0.49	-1.0
3,006,974	+		GFF2934	0.68	-0.2
3,006,980	+		GFF2934	0.70	-0.0
3,006,982	-		GFF2934	0.71	+1.5
3,007,007	-		GFF2934	0.81	+0.2
3,007,030	-				+0.5
3,007,039	+				+0.6
3,007,045	+				+0.1
3,007,047	-				-0.8
3,007,052	+				-1.7
3,007,052	+				-0.0
3,007,055	+				-1.2
3,007,082	+				+1.0
3,007,082	+				+1.2
3,007,082	+				-0.1
3,007,090	-				-0.4
3,007,093	+				-0.5
3,007,101	-				-0.9
3,007,117	+				+0.6
3,007,162	+				+0.5
3,007,162	+				-1.2
3,007,178	+				+0.6
3,007,182	-				-2.2
3,007,231	+		GFF2935	0.12	-0.5
3,007,254	+		GFF2935	0.13	+1.4
3,007,254	+		GFF2935	0.13	-1.4
3,007,254	+		GFF2935	0.13	-1.0
3,007,262	-		GFF2935	0.14	+1.8
3,007,262	-		GFF2935	0.14	-2.4
3,007,262	-		GFF2935	0.14	+0.4
3,007,262	-		GFF2935	0.14	+0.6
3,007,271	+		GFF2935	0.14	+1.2
3,007,300	+		GFF2935	0.16	+1.4
3,007,300	+		GFF2935	0.16	+0.4
3,007,300	+		GFF2935	0.16	+0.1
3,007,300	+		GFF2935	0.16	+0.4
3,007,305	+		GFF2935	0.16	-1.2
3,007,308	-		GFF2935	0.16	-0.4
3,007,308	-		GFF2935	0.16	-0.2
3,007,308	-		GFF2935	0.16	-0.2
3,007,308	-		GFF2935	0.16	-2.1
3,007,308	-		GFF2935	0.16	-0.0
3,007,318	-		GFF2935	0.17	+0.6
3,007,352	+		GFF2935	0.19	+0.3
3,007,360	-		GFF2935	0.20	+0.4
3,007,371	+		GFF2935	0.21	+0.4
3,007,371	+		GFF2935	0.21	+0.6
3,007,379	-		GFF2935	0.21	-0.3
3,007,384	+		GFF2935	0.21	+0.6
3,007,384	+		GFF2935	0.21	+1.6
3,007,384	+		GFF2935	0.21	-0.6
3,007,384	+		GFF2935	0.21	-0.5
3,007,394	+		GFF2935	0.22	-0.4
3,007,400	+		GFF2935	0.22	-0.9
3,007,426	-		GFF2935	0.24	+0.1
3,007,436	-		GFF2935	0.25	+0.4
3,007,468	+		GFF2935	0.27	+0.9
3,007,517	+		GFF2935	0.30	-0.3
3,007,517	+		GFF2935	0.30	-0.4
3,007,522	+		GFF2935	0.30	-1.2
3,007,522	+		GFF2935	0.30	-1.4
3,007,522	+		GFF2935	0.30	-1.5
3,007,522	+		GFF2935	0.30	+0.8
3,007,527	+		GFF2935	0.31	-1.8
3,007,530	-		GFF2935	0.31	-0.3
3,007,530	-		GFF2935	0.31	-0.9
3,007,530	-		GFF2935	0.31	-1.1
3,007,572	+		GFF2935	0.33	+1.2
3,007,575	+		GFF2935	0.34	-0.3
3,007,598	-		GFF2935	0.35	+1.1
3,007,603	+		GFF2935	0.35	+0.1
3,007,611	-		GFF2935	0.36	-1.0
3,007,611	-		GFF2935	0.36	-1.1
3,007,613	+		GFF2935	0.36	+0.5
3,007,613	+		GFF2935	0.36	+0.4
3,007,616	-		GFF2935	0.36	+0.2
3,007,618	+		GFF2935	0.36	-0.4
3,007,640	+		GFF2935	0.38	-1.0
3,007,645	+		GFF2935	0.38	-0.6
3,007,645	+		GFF2935	0.38	-2.1
3,007,645	+		GFF2935	0.38	-0.0
3,007,653	+		GFF2935	0.39	-1.7
3,007,653	-		GFF2935	0.39	+0.1
3,007,655	+		GFF2935	0.39	-1.8
3,007,658	-		GFF2935	0.39	-0.9
3,007,658	-		GFF2935	0.39	-0.1
3,007,663	+		GFF2935	0.39	-1.8
3,007,663	-		GFF2935	0.39	-1.5
3,007,678	-		GFF2935	0.40	-0.2
3,007,678	-		GFF2935	0.40	-1.4
3,007,678	-		GFF2935	0.40	-0.0
3,007,694	+		GFF2935	0.41	-0.2
3,007,702	-		GFF2935	0.42	-1.0
3,007,702	-		GFF2935	0.42	-1.7
3,007,702	-		GFF2935	0.42	+0.1
3,007,717	+		GFF2935	0.43	+0.7
3,007,717	+		GFF2935	0.43	-0.2
3,007,717	+		GFF2935	0.43	-1.9
3,007,717	+		GFF2935	0.43	+0.6
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