Strain Fitness in Sphingobium sp. HT1-2 around GFF2931

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,003,069	+				+0.4
3,003,077	-				-3.0
3,003,117	-				+0.3
3,003,165	-				+0.9
3,003,172	+				-1.1
3,003,172	+				-1.2
3,003,172	+				-1.7
3,003,172	+				+0.2
3,003,182	+				+0.1
3,003,182	+				-2.1
3,003,190	-				+0.7
3,003,190	-				-0.6
3,003,190	-				+0.5
3,003,190	-				-0.6
3,003,190	-				-0.3
3,003,238	+				-0.1
3,003,243	+				-1.8
3,003,251	-		GFF2930	0.10	-0.2
3,003,251	-		GFF2930	0.10	-1.9
3,003,256	-		GFF2930	0.11	-1.2
3,003,256	-		GFF2930	0.11	-1.1
3,003,256	-		GFF2930	0.11	+1.5
3,003,256	-		GFF2930	0.11	+0.9
3,003,283	+		GFF2930	0.14	-0.0
3,003,283	+		GFF2930	0.14	-2.1
3,003,283	-		GFF2930	0.14	+0.2
3,003,291	-		GFF2930	0.15	+0.1
3,003,325	+		GFF2930	0.19	-0.6
3,003,325	+		GFF2930	0.19	-0.9
3,003,333	-		GFF2930	0.20	-0.9
3,003,333	-		GFF2930	0.20	-1.1
3,003,363	-		GFF2930	0.23	-1.0
3,003,364	-		GFF2930	0.23	+0.6
3,003,389	-		GFF2930	0.26	-2.7
3,003,428	+		GFF2930	0.30	-1.2
3,003,428	+		GFF2930	0.30	+1.3
3,003,428	+		GFF2930	0.30	+0.4
3,003,428	+		GFF2930	0.30	+0.2
3,003,428	+		GFF2930	0.30	-0.6
3,003,428	+		GFF2930	0.30	-0.1
3,003,428	+		GFF2930	0.30	-2.9
3,003,428	+		GFF2930	0.30	-0.5
3,003,433	+		GFF2930	0.31	-1.0
3,003,436	-		GFF2930	0.31	-0.4
3,003,436	-		GFF2930	0.31	+0.5
3,003,436	-		GFF2930	0.31	+0.8
3,003,436	-		GFF2930	0.31	-0.6
3,003,436	-		GFF2930	0.31	+1.3
3,003,436	-		GFF2930	0.31	-1.4
3,003,436	-		GFF2930	0.31	-1.4
3,003,441	-		GFF2930	0.32	-0.6
3,003,459	+		GFF2930	0.34	+0.0
3,003,460	+		GFF2930	0.34	-0.6
3,003,460	+		GFF2930	0.34	-0.1
3,003,460	+		GFF2930	0.34	+0.6
3,003,468	-		GFF2930	0.35	+0.4
3,003,486	+		GFF2930	0.37	-0.5
3,003,486	+		GFF2930	0.37	+0.8
3,003,502	+		GFF2930	0.38	-2.4
3,003,517	+		GFF2930	0.40	-0.9
3,003,517	+		GFF2930	0.40	-0.1
3,003,523	+		GFF2930	0.41	-0.5
3,003,525	-		GFF2930	0.41	-1.2
3,003,542	+		GFF2930	0.43	+0.2
3,003,550	-		GFF2930	0.44	+0.4
3,003,550	-		GFF2930	0.44	+1.1
3,003,552	+		GFF2930	0.44	+1.1
3,003,552	+		GFF2930	0.44	-1.0
3,003,560	-		GFF2930	0.45	+0.6
3,003,560	-		GFF2930	0.45	-0.1
3,003,577	+		GFF2930	0.47	-0.8
3,003,585	-		GFF2930	0.48	-0.5
3,003,600	+		GFF2930	0.49	-2.4
3,003,605	+		GFF2930	0.50	-0.4
3,003,605	+		GFF2930	0.50	-0.9
3,003,608	-		GFF2930	0.50	-0.3
3,003,642	-		GFF2930	0.54	+0.9
3,003,643	+		GFF2930	0.54	+1.4
3,003,644	+		GFF2930	0.54	-0.5
3,003,646	+		GFF2930	0.55	-0.8
3,003,646	+		GFF2930	0.55	+1.0
3,003,651	+		GFF2930	0.55	-0.7
3,003,651	+		GFF2930	0.55	+0.8
3,003,652	-		GFF2930	0.55	-1.3
3,003,654	-		GFF2930	0.56	+0.1
3,003,654	-		GFF2930	0.56	+0.4
3,003,659	-		GFF2930	0.56	-1.7
3,003,659	-		GFF2930	0.56	+0.9
3,003,659	-		GFF2930	0.56	+0.0
3,003,659	-		GFF2930	0.56	-0.2
3,003,682	-		GFF2930	0.59	-0.3
3,003,705	-		GFF2930	0.61	+1.3
3,003,710	+		GFF2930	0.62	-1.8
3,003,726	+		GFF2930	0.64	-1.0
3,003,736	+		GFF2930	0.65	+0.9
3,003,742	+		GFF2930	0.65	-0.0
3,003,742	+		GFF2930	0.65	+1.0
3,003,742	+		GFF2930	0.65	+0.7
3,003,742	+		GFF2930	0.65	-0.6
3,003,750	-		GFF2930	0.66	-1.7
3,003,750	-		GFF2930	0.66	-1.1
3,003,750	-		GFF2930	0.66	-1.1
3,003,750	-		GFF2930	0.66	+1.3
3,003,752	+		GFF2930	0.67	-0.2
3,003,757	+		GFF2930	0.67	-0.4
3,003,757	+		GFF2930	0.67	-0.1
3,003,757	+		GFF2930	0.67	+1.6
3,003,757	+		GFF2930	0.67	-0.9
3,003,757	+		GFF2930	0.67	-1.4
3,003,757	+		GFF2930	0.67	-0.3
3,003,758	+		GFF2930	0.67	-0.5
3,003,765	-		GFF2930	0.68	-0.3
3,003,765	-		GFF2930	0.68	+0.1
3,003,765	-		GFF2930	0.68	+1.0
3,003,766	-		GFF2930	0.68	+1.1
3,003,770	-		GFF2930	0.69	-0.2
3,003,777	-		GFF2930	0.69	+0.4
3,003,787	+		GFF2930	0.70	-0.1
3,003,787	+		GFF2930	0.70	+0.1
3,003,787	+		GFF2930	0.70	-0.2
3,003,787	+		GFF2930	0.70	-2.4
3,003,794	-		GFF2930	0.71	-1.1
3,003,795	-		GFF2930	0.71	-1.2
3,003,801	-		GFF2930	0.72	+1.1
3,003,801	-		GFF2930	0.72	+0.6
3,003,815	+		GFF2930	0.74	+0.3
3,003,815	+		GFF2930	0.74	-1.6
3,003,820	+		GFF2930	0.74	+0.5
3,003,825	+		GFF2930	0.75	-0.6
3,003,828	-		GFF2930	0.75	+0.6
3,003,828	-		GFF2930	0.75	+0.7
3,003,830	+		GFF2930	0.75	+1.1
3,003,843	-		GFF2930	0.77	-1.2
3,003,849	-		GFF2930	0.77	-1.2
3,003,851	-		GFF2930	0.78	-0.6
3,003,851	-		GFF2930	0.78	-0.9
3,003,858	-		GFF2930	0.78	-0.9
3,003,915	-		GFF2930	0.85	-1.1
3,003,923	+		GFF2930	0.86	-0.2
3,003,923	+		GFF2930	0.86	-2.1
3,003,931	-		GFF2930	0.87	+0.8
3,003,931	-		GFF2930	0.87	-0.9
3,003,931	-		GFF2930	0.87	+0.2
3,003,931	-		GFF2930	0.87	-0.9
3,003,931	-		GFF2930	0.87	+0.3
3,003,931	-		GFF2930	0.87	-1.1
3,003,941	+		GFF2930	0.88	-0.6
3,003,946	+		GFF2930	0.88	+0.4
3,003,962	-				-0.4
3,003,974	-				+0.9
3,004,003	-				-0.2
3,004,003	-				-1.0
3,004,007	+				+0.6
3,004,024	+				+0.1
3,004,027	-				+1.2
3,004,032	-				-0.6
3,004,032	-				-1.8
3,004,057	-				+0.8
3,004,075	+				-1.5
3,004,083	+		GFF2931	0.10	+0.8
3,004,091	-		GFF2931	0.12	-0.5
3,004,096	+		GFF2931	0.14	-1.1
3,004,105	+		GFF2931	0.16	-0.2
3,004,119	+		GFF2931	0.20	-0.9
3,004,124	+		GFF2931	0.22	-0.6
3,004,137	-		GFF2931	0.25	-2.2
3,004,139	+		GFF2931	0.26	-0.5
3,004,162	+		GFF2931	0.32	-1.2
3,004,162	+		GFF2931	0.32	+1.1
3,004,170	-		GFF2931	0.34	+0.6
3,004,170	-		GFF2931	0.34	-0.2
3,004,172	+		GFF2931	0.35	-0.4
3,004,172	+		GFF2931	0.35	+0.6
3,004,187	+		GFF2931	0.39	-1.4
3,004,195	-		GFF2931	0.41	-0.1
3,004,207	+		GFF2931	0.45	-1.8
3,004,215	-		GFF2931	0.47	+1.9
3,004,215	-		GFF2931	0.47	+1.2
3,004,215	-		GFF2931	0.47	-1.1
3,004,293	+		GFF2931	0.69	-0.0
3,004,297	-		GFF2931	0.70	+0.2
3,004,301	-		GFF2931	0.71	+0.5
3,004,303	+		GFF2931	0.71	+0.5
3,004,316	+		GFF2931	0.75	+1.5
3,004,338	+		GFF2931	0.81	+0.4
3,004,349	+		GFF2931	0.84	+1.6
3,004,349	+		GFF2931	0.84	+1.3
3,004,349	+		GFF2931	0.84	-0.4
3,004,349	+		GFF2931	0.84	-0.5
3,004,349	+		GFF2931	0.84	-0.1
3,004,359	+		GFF2931	0.87	-0.4
3,004,359	+		GFF2931	0.87	+0.1
3,004,361	+		GFF2931	0.88	-0.9
3,004,366	+		GFF2931	0.89	+0.1
3,004,366	+		GFF2931	0.89	-1.2
3,004,366	+		GFF2931	0.89	-1.4
3,004,366	+		GFF2931	0.89	-0.9
3,004,366	+		GFF2931	0.89	+0.4
3,004,367	-		GFF2931	0.89	-0.6
3,004,374	-				-0.6
3,004,385	-				-1.1
3,004,402	+				+0.4
3,004,402	+				+0.3
3,004,407	+				+0.6
3,004,410	-				-0.7
3,004,465	+				+0.6
3,004,465	+				+1.1
3,004,478	-				+0.9
3,004,478	-				+0.4
3,004,480	+				+0.8
3,004,480	+				+0.4
3,004,480	+				-1.8
3,004,480	+				-1.8
3,004,488	-				-0.6
3,004,519	-				+1.1
3,004,520	+				+0.6
3,004,521	-				-0.2
3,004,546	+				-0.9
3,004,552	+				-0.6
3,004,552	+				-0.1
3,004,552	+				-1.7
3,004,552	+				+0.3
3,004,552	+				+1.0
3,004,552	+				+0.4
3,004,560	-				+0.1
3,004,560	-				-0.6
3,004,560	-				-0.1
3,004,560	-				+0.1
3,004,560	-				-0.3
3,004,560	-				-1.1
3,004,572	+		GFF2932	0.11	-0.5
3,004,572	+		GFF2932	0.11	+1.2
3,004,572	+		GFF2932	0.11	+0.8
3,004,572	+		GFF2932	0.11	-1.0
3,004,572	+		GFF2932	0.11	-1.2
3,004,575	-		GFF2932	0.11	+0.9
3,004,580	-		GFF2932	0.11	-1.9
3,004,580	-		GFF2932	0.11	-0.7
3,004,580	-		GFF2932	0.11	+0.7
3,004,588	+		GFF2932	0.12	-0.5
3,004,612	+		GFF2932	0.13	+0.2
3,004,624	+		GFF2932	0.14	-0.5
3,004,632	+		GFF2932	0.14	-1.8
3,004,639	+		GFF2932	0.15	+0.3
3,004,642	-		GFF2932	0.15	+1.4
3,004,692	-		GFF2932	0.18	+0.0
3,004,701	+		GFF2932	0.18	+1.2
3,004,704	-		GFF2932	0.19	-0.6
3,004,713	+		GFF2932	0.19	-1.5
3,004,715	+		GFF2932	0.19	+0.9
3,004,715	+		GFF2932	0.19	-0.3
3,004,720	+		GFF2932	0.20	-0.5
3,004,721	-		GFF2932	0.20	+0.4
3,004,738	-		GFF2932	0.21	+0.1
3,004,738	-		GFF2932	0.21	+0.4
3,004,738	-		GFF2932	0.21	+0.4
3,004,760	-		GFF2932	0.22	-0.3
3,004,780	+		GFF2932	0.23	+0.0
3,004,784	+		GFF2932	0.23	-0.3
3,004,784	+		GFF2932	0.23	+0.4
3,004,792	-		GFF2932	0.24	-0.9
3,004,792	-		GFF2932	0.24	-2.5
3,004,802	+		GFF2932	0.25	+0.8
3,004,810	-		GFF2932	0.25	+0.5
3,004,810	-		GFF2932	0.25	-0.7
3,004,810	-		GFF2932	0.25	-0.6
3,004,823	-		GFF2932	0.26	+0.9
3,004,825	+		GFF2932	0.26	-2.1
3,004,825	-		GFF2932	0.26	+0.4
3,004,833	-		GFF2932	0.26	-2.2
3,004,857	-		GFF2932	0.28	-0.5
3,004,858	+		GFF2932	0.28	-0.1
3,004,867	+		GFF2932	0.28	+0.4
3,004,867	+		GFF2932	0.28	+0.4
3,004,913	-		GFF2932	0.31	-0.5
3,004,943	-		GFF2932	0.33	-0.6
3,004,946	+		GFF2932	0.33	-0.7
3,004,954	+		GFF2932	0.34	-0.8
3,004,962	-		GFF2932	0.34	-0.6
3,004,962	-		GFF2932	0.34	+0.0
3,004,967	-		GFF2932	0.34	-0.9
3,004,967	-		GFF2932	0.34	+0.1
3,004,969	+		GFF2932	0.35	-0.7
3,004,989	-		GFF2932	0.36	-0.6
3,004,994	-		GFF2932	0.36	+0.3
3,005,007	+		GFF2932	0.37	-0.3
3,005,007	+		GFF2932	0.37	-1.4
3,005,007	+		GFF2932	0.37	-2.7
3,005,012	+		GFF2932	0.37	-2.8
3,005,012	+		GFF2932	0.37	+0.2
3,005,015	-		GFF2932	0.37	-0.8
3,005,015	-		GFF2932	0.37	+1.5
3,005,015	-		GFF2932	0.37	+0.8
3,005,015	-		GFF2932	0.37	-1.2
3,005,020	-		GFF2932	0.38	-0.7
3,005,028	-		GFF2932	0.38	+0.6
3,005,048	+		GFF2932	0.39	-0.1
3,005,055	+		GFF2932	0.40	-0.9
3,005,063	-		GFF2932	0.40	+0.8
3,005,074	-		GFF2932	0.41	+0.6
3,005,076	+		GFF2932	0.41	-0.4
3,005,084	-		GFF2932	0.42	-1.7
3,005,084	-		GFF2932	0.42	-1.4
3,005,089	+		GFF2932	0.42	+0.6
3,005,099	-		GFF2932	0.42	-1.0
3,005,108	+		GFF2932	0.43	-0.6
3,005,150	+		GFF2932	0.46	-0.7
3,005,150	+		GFF2932	0.46	-0.5
3,005,150	+		GFF2932	0.46	+0.5
3,005,158	-		GFF2932	0.46	+0.1
3,005,158	-		GFF2932	0.46	-0.4
3,005,161	+		GFF2932	0.46	+0.8
3,005,169	+		GFF2932	0.47	+0.1
3,005,169	-		GFF2932	0.47	+0.6
3,005,169	-		GFF2932	0.47	-2.0
3,005,176	+		GFF2932	0.47	+0.2
3,005,178	+		GFF2932	0.47	+0.1
3,005,204	+		GFF2932	0.49	+0.9
3,005,207	+		GFF2932	0.49	-1.2
3,005,211	+		GFF2932	0.49	+0.0
3,005,211	+		GFF2932	0.49	-0.0
3,005,219	-		GFF2932	0.50	+0.1
3,005,237	-		GFF2932	0.51	+1.4
3,005,256	-		GFF2932	0.52	+1.1
3,005,259	-		GFF2932	0.52	-0.5
3,005,259	-		GFF2932	0.52	+0.1
3,005,276	+		GFF2932	0.53	+0.6
3,005,276	+		GFF2932	0.53	-1.5
3,005,282	+		GFF2932	0.53	-1.1
3,005,282	-		GFF2932	0.53	-1.5
3,005,284	+		GFF2932	0.54	-0.4
3,005,284	-		GFF2932	0.54	+0.4
3,005,284	-		GFF2932	0.54	-1.0
3,005,286	+		GFF2932	0.54	-1.0
3,005,286	+		GFF2932	0.54	-0.2
3,005,290	-		GFF2932	0.54	+0.9
3,005,294	-		GFF2932	0.54	-0.6
3,005,294	-		GFF2932	0.54	+1.2
3,005,294	-		GFF2932	0.54	-2.1
3,005,296	+		GFF2932	0.54	+1.0
3,005,296	+		GFF2932	0.54	-1.5
3,005,296	+		GFF2932	0.54	-0.2
3,005,296	+		GFF2932	0.54	-0.4
3,005,296	+		GFF2932	0.54	-0.4
3,005,296	+		GFF2932	0.54	-0.7
3,005,296	+		GFF2932	0.54	+0.4
3,005,296	+		GFF2932	0.54	+0.9
3,005,296	+		GFF2932	0.54	+0.1
3,005,304	-		GFF2932	0.55	-2.1
3,005,304	-		GFF2932	0.55	+0.7
3,005,304	-		GFF2932	0.55	-0.9
3,005,304	-		GFF2932	0.55	-2.2
3,005,304	-		GFF2932	0.55	+0.5
3,005,304	-		GFF2932	0.55	+0.3
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