Strain Fitness in Sphingobium sp. HT1-2 around GFF2918

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,985,364	-		GFF2915	0.80	+0.2
2,985,418	-				-0.6
2,985,488	-				-0.5
2,985,503	+				-1.8
2,985,626	+		GFF2916	0.24	-2.3
2,985,639	+		GFF2916	0.26	-1.1
2,985,639	+		GFF2916	0.26	-1.7
2,985,703	-		GFF2916	0.39	-0.5
2,985,703	-		GFF2916	0.39	-0.6
2,985,703	-		GFF2916	0.39	-1.2
2,985,851	+		GFF2916	0.67	+0.5
2,985,856	+		GFF2916	0.68	+1.0
2,985,856	+		GFF2916	0.68	-0.6
2,985,856	+		GFF2916	0.68	+1.5
2,985,856	+		GFF2916	0.68	+0.5
2,985,856	+		GFF2916	0.68	+0.6
2,985,881	+		GFF2916	0.73	-0.7
2,985,886	+		GFF2916	0.74	+0.7
2,985,889	-		GFF2916	0.75	+1.0
2,985,907	+		GFF2916	0.78	-0.5
2,985,915	-		GFF2916	0.80	-0.5
2,985,941	+		GFF2916	0.85	-2.0
2,985,974	+				-1.7
2,985,974	+				+0.4
2,985,982	-				-0.4
2,985,983	+				+0.2
2,985,986	-				-0.4
2,985,989	+				+0.5
2,985,992	-				+0.2
2,986,019	+				-0.3
2,986,026	+				+0.5
2,986,034	-				-0.1
2,986,044	+				+0.0
2,986,057	-				-1.5
2,986,061	+				-2.6
2,986,066	+				-1.8
2,986,074	-				-0.7
2,986,095	+				-0.2
2,986,095	+				-0.6
2,986,100	+				-2.3
2,986,102	+				-0.9
2,986,103	-				-0.5
2,986,110	-				+0.5
2,986,110	-				+0.9
2,986,111	-				-1.1
2,986,137	+		GFF2917	0.15	-1.3
2,986,137	+		GFF2917	0.15	-0.3
2,986,142	+		GFF2917	0.17	+0.3
2,986,142	+		GFF2917	0.17	-1.2
2,986,148	+		GFF2917	0.19	-0.3
2,986,148	+		GFF2917	0.19	-0.8
2,986,148	+		GFF2917	0.19	+0.3
2,986,148	+		GFF2917	0.19	+0.2
2,986,155	-		GFF2917	0.21	+1.2
2,986,155	-		GFF2917	0.21	+0.2
2,986,156	-		GFF2917	0.22	-0.2
2,986,156	-		GFF2917	0.22	-1.2
2,986,156	-		GFF2917	0.22	-2.2
2,986,156	-		GFF2917	0.22	-0.5
2,986,156	-		GFF2917	0.22	-1.1
2,986,156	-		GFF2917	0.22	+1.1
2,986,172	+		GFF2917	0.28	+0.6
2,986,175	-		GFF2917	0.29	-1.2
2,986,175	-		GFF2917	0.29	-1.8
2,986,175	-		GFF2917	0.29	+0.5
2,986,177	+		GFF2917	0.30	-2.1
2,986,180	-		GFF2917	0.31	+1.8
2,986,180	-		GFF2917	0.31	+0.5
2,986,180	-		GFF2917	0.31	+0.0
2,986,180	-		GFF2917	0.31	-0.8
2,986,182	+		GFF2917	0.31	-0.3
2,986,185	-		GFF2917	0.33	-0.4
2,986,187	+		GFF2917	0.33	+0.8
2,986,187	+		GFF2917	0.33	+0.1
2,986,187	+		GFF2917	0.33	-0.4
2,986,187	+		GFF2917	0.33	-0.2
2,986,187	+		GFF2917	0.33	+1.1
2,986,187	+		GFF2917	0.33	+0.1
2,986,187	+		GFF2917	0.33	+0.2
2,986,187	+		GFF2917	0.33	-0.4
2,986,187	+		GFF2917	0.33	-0.3
2,986,187	+		GFF2917	0.33	+0.2
2,986,187	+		GFF2917	0.33	+0.2
2,986,187	+		GFF2917	0.33	+0.9
2,986,190	-		GFF2917	0.34	-1.8
2,986,195	-		GFF2917	0.36	+0.2
2,986,195	-		GFF2917	0.36	-0.6
2,986,195	-		GFF2917	0.36	-0.1
2,986,195	-		GFF2917	0.36	-0.4
2,986,195	-		GFF2917	0.36	-0.5
2,986,195	-		GFF2917	0.36	-0.7
2,986,195	-		GFF2917	0.36	+1.0
2,986,195	-		GFF2917	0.36	-1.9
2,986,195	-		GFF2917	0.36	+0.0
2,986,195	-		GFF2917	0.36	-0.3
2,986,195	-		GFF2917	0.36	-1.4
2,986,200	-		GFF2917	0.38	-2.4
2,986,205	-		GFF2917	0.40	+0.2
2,986,205	-		GFF2917	0.40	-0.0
2,986,205	-		GFF2917	0.40	+0.3
2,986,205	-		GFF2917	0.40	-1.0
2,986,258	+		GFF2917	0.60	-1.6
2,986,266	-		GFF2917	0.63	-0.8
2,986,266	-		GFF2917	0.63	-0.5
2,986,266	-		GFF2917	0.63	-1.5
2,986,269	+		GFF2917	0.64	-0.3
2,986,275	+		GFF2917	0.66	-1.0
2,986,280	+		GFF2917	0.68	-1.8
2,986,283	-		GFF2917	0.69	+0.3
2,986,293	-		GFF2917	0.73	-0.8
2,986,360	+				-0.1
2,986,360	+				-2.0
2,986,360	+				-0.2
2,986,368	-				-0.0
2,986,368	-				-1.1
2,986,376	-				+0.8
2,986,399	+				-0.1
2,986,401	-				+0.2
2,986,418	+		GFF2918	0.10	-0.4
2,986,424	-		GFF2918	0.11	-1.2
2,986,424	-		GFF2918	0.11	-1.1
2,986,426	+		GFF2918	0.12	+0.8
2,986,426	-		GFF2918	0.12	+0.0
2,986,428	+		GFF2918	0.12	+1.3
2,986,428	+		GFF2918	0.12	+0.1
2,986,428	+		GFF2918	0.12	+0.8
2,986,428	+		GFF2918	0.12	+1.1
2,986,436	-		GFF2918	0.13	-0.9
2,986,436	-		GFF2918	0.13	+0.9
2,986,436	-		GFF2918	0.13	+0.0
2,986,436	-		GFF2918	0.13	+0.7
2,986,436	-		GFF2918	0.13	-0.4
2,986,436	-		GFF2918	0.13	+0.8
2,986,436	-		GFF2918	0.13	-1.8
2,986,436	-		GFF2918	0.13	-1.3
2,986,447	+		GFF2918	0.15	-0.2
2,986,447	-		GFF2918	0.15	-0.0
2,986,454	+		GFF2918	0.17	+0.0
2,986,454	+		GFF2918	0.17	+0.3
2,986,454	+		GFF2918	0.17	-0.4
2,986,454	+		GFF2918	0.17	+0.6
2,986,454	+		GFF2918	0.17	-0.4
2,986,454	+		GFF2918	0.17	+0.1
2,986,454	+		GFF2918	0.17	-0.3
2,986,454	+		GFF2918	0.17	-0.3
2,986,454	+		GFF2918	0.17	-1.8
2,986,454	+		GFF2918	0.17	-0.8
2,986,455	-		GFF2918	0.17	+0.8
2,986,462	-		GFF2918	0.18	-1.2
2,986,462	-		GFF2918	0.18	-0.0
2,986,462	-		GFF2918	0.18	-0.5
2,986,462	-		GFF2918	0.18	-0.4
2,986,462	-		GFF2918	0.18	+0.4
2,986,462	-		GFF2918	0.18	-0.6
2,986,462	-		GFF2918	0.18	-0.6
2,986,462	-		GFF2918	0.18	+0.4
2,986,462	-		GFF2918	0.18	-1.0
2,986,462	-		GFF2918	0.18	-1.1
2,986,462	-		GFF2918	0.18	-1.8
2,986,485	-		GFF2918	0.22	+0.3
2,986,547	+		GFF2918	0.34	+1.7
2,986,547	+		GFF2918	0.34	-0.2
2,986,547	+		GFF2918	0.34	+0.6
2,986,547	+		GFF2918	0.34	-0.3
2,986,547	+		GFF2918	0.34	+0.3
2,986,555	-		GFF2918	0.35	-0.3
2,986,555	-		GFF2918	0.35	+0.5
2,986,560	+		GFF2918	0.36	-1.5
2,986,565	+		GFF2918	0.37	+1.6
2,986,565	+		GFF2918	0.37	+1.8
2,986,568	-		GFF2918	0.38	+0.4
2,986,570	-		GFF2918	0.38	+0.3
2,986,571	+		GFF2918	0.38	-0.5
2,986,571	+		GFF2918	0.38	-0.2
2,986,573	-		GFF2918	0.39	+0.5
2,986,573	-		GFF2918	0.39	+1.1
2,986,573	-		GFF2918	0.39	+0.5
2,986,578	-		GFF2918	0.40	-0.9
2,986,579	-		GFF2918	0.40	+1.7
2,986,597	-		GFF2918	0.43	-1.8
2,986,606	+		GFF2918	0.45	+1.0
2,986,633	-		GFF2918	0.50	-1.0
2,986,635	-		GFF2918	0.50	-0.3
2,986,637	+		GFF2918	0.50	-0.1
2,986,639	+		GFF2918	0.51	-0.6
2,986,649	+		GFF2918	0.53	+0.1
2,986,651	+		GFF2918	0.53	+0.2
2,986,654	+		GFF2918	0.54	-0.6
2,986,654	+		GFF2918	0.54	-0.3
2,986,657	-		GFF2918	0.54	+0.7
2,986,659	+		GFF2918	0.55	+0.3
2,986,659	+		GFF2918	0.55	+0.1
2,986,659	+		GFF2918	0.55	+0.3
2,986,659	+		GFF2918	0.55	+0.5
2,986,677	-		GFF2918	0.58	+0.7
2,986,677	-		GFF2918	0.58	+1.1
2,986,677	-		GFF2918	0.58	-1.1
2,986,709	-		GFF2918	0.64	-0.8
2,986,765	+		GFF2918	0.74	-0.8
2,986,779	+		GFF2918	0.77	-0.5
2,986,782	-		GFF2918	0.77	-0.9
2,986,782	-		GFF2918	0.77	+0.8
2,986,783	-		GFF2918	0.77	-1.7
2,986,783	-		GFF2918	0.77	+0.3
2,986,783	-		GFF2918	0.77	+0.3
2,986,786	+		GFF2918	0.78	+0.9
2,986,787	-		GFF2918	0.78	-0.0
2,986,809	+		GFF2918	0.82	-0.4
2,986,842	+		GFF2918	0.88	+0.0
2,986,842	-		GFF2918	0.88	-0.3
2,986,862	+				-0.9
2,986,862	+				+0.2
2,986,867	+				+1.1
2,986,870	+				-2.6
2,986,870	-				+0.2
2,986,885	-				-2.1
2,986,923	-				-0.9
2,986,923	-				+1.2
2,986,923	-				-0.9
2,986,955	+		GFF2919	0.10	-0.1
2,986,967	+		GFF2919	0.13	-0.5
2,986,967	+		GFF2919	0.13	+0.4
2,986,971	+		GFF2919	0.13	-2.4
2,987,015	-		GFF2919	0.22	-0.6
2,987,043	+		GFF2919	0.28	+0.8
2,987,051	-		GFF2919	0.29	-1.0
2,987,073	+		GFF2919	0.34	+0.8
2,987,078	+		GFF2919	0.35	-0.2
2,987,110	+		GFF2919	0.41	-0.7
2,987,138	+		GFF2919	0.47	+0.4
2,987,138	-		GFF2919	0.47	-0.2
2,987,146	-		GFF2919	0.49	-0.4
2,987,161	-		GFF2919	0.52	+0.0
2,987,165	-		GFF2919	0.53	+0.2
2,987,166	-		GFF2919	0.53	-0.3
2,987,205	+		GFF2919	0.61	-0.2
2,987,275	-		GFF2919	0.75	-0.0
2,987,378	+				+0.6
2,987,389	+				-0.4
2,987,409	+				-0.3
2,987,411	-				+0.2
2,987,414	+				-0.2
2,987,414	+				-0.0
2,987,414	+				-1.9
2,987,414	+				+0.1
2,987,417	-				+0.9
2,987,419	+				-1.2
2,987,422	-				+1.5
2,987,422	-				-0.4
2,987,424	+				+0.1
2,987,432	-				+0.2
2,987,460	-				+0.1
2,987,464	-				+0.3
2,987,511	+				-0.0
2,987,548	+				-0.5
2,987,556	-				-2.8
2,987,577	-				-0.7
2,987,579	+				-0.9
2,987,595	+				+0.7
2,987,598	-				-0.6
2,987,603	-				+0.6
2,987,606	+				+1.6
2,987,614	-				+0.6
2,987,628	+				+0.4
2,987,641	+				-1.1
2,987,641	+				+2.1
2,987,660	+		GFF2920	0.10	-0.5
2,987,665	+		GFF2920	0.10	-0.2
2,987,668	-		GFF2920	0.11	+0.7
2,987,674	+		GFF2920	0.11	+1.0
2,987,688	+		GFF2920	0.11	-0.9
2,987,705	+		GFF2920	0.12	+0.5
2,987,708	+		GFF2920	0.12	-1.7
2,987,710	+		GFF2920	0.12	-0.2
2,987,710	+		GFF2920	0.12	-0.3
2,987,710	+		GFF2920	0.12	-1.3
2,987,710	+		GFF2920	0.12	-0.3
2,987,725	+		GFF2920	0.13	+0.8
2,987,744	-		GFF2920	0.14	-0.5
2,987,746	-		GFF2920	0.14	-0.8
2,987,754	+		GFF2920	0.14	-0.0
2,987,768	-		GFF2920	0.15	+1.2
2,987,778	+		GFF2920	0.15	+0.5
2,987,781	-		GFF2920	0.15	-0.4
2,987,781	-		GFF2920	0.15	-0.6
2,987,795	-		GFF2920	0.16	-0.4
2,987,797	-		GFF2920	0.16	+1.0
2,987,799	+		GFF2920	0.16	-0.8
2,987,807	-		GFF2920	0.16	+0.5
2,987,807	-		GFF2920	0.16	-1.1
2,987,807	-		GFF2920	0.16	-0.6
2,987,824	+		GFF2920	0.17	+0.8
2,987,824	+		GFF2920	0.17	-0.6
2,987,824	+		GFF2920	0.17	-0.2
2,987,824	+		GFF2920	0.17	+0.0
2,987,824	+		GFF2920	0.17	-1.1
2,987,824	+		GFF2920	0.17	-1.3
2,987,824	+		GFF2920	0.17	-2.2
2,987,832	-		GFF2920	0.17	-1.0
2,987,832	-		GFF2920	0.17	+0.3
2,987,877	+		GFF2920	0.19	+0.5
2,987,878	-		GFF2920	0.19	+0.7
2,987,879	+		GFF2920	0.19	-0.2
2,987,887	+		GFF2920	0.20	+0.5