Strain Fitness in Sphingobium sp. HT1-2 around GFF2886

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,946,188	-		GFF2885	0.13	+0.8
2,946,209	+		GFF2885	0.15	-0.6
2,946,218	-		GFF2885	0.16	+0.4
2,946,220	-		GFF2885	0.16	-0.3
2,946,248	+		GFF2885	0.19	+0.6
2,946,313	+		GFF2885	0.25	-0.1
2,946,317	-		GFF2885	0.26	-1.7
2,946,317	-		GFF2885	0.26	+0.3
2,946,321	+		GFF2885	0.26	-0.8
2,946,340	+		GFF2885	0.28	-0.0
2,946,340	+		GFF2885	0.28	-1.3
2,946,340	+		GFF2885	0.28	+0.2
2,946,340	+		GFF2885	0.28	+0.2
2,946,340	+		GFF2885	0.28	-2.5
2,946,348	-		GFF2885	0.29	-0.2
2,946,348	-		GFF2885	0.29	+0.2
2,946,348	-		GFF2885	0.29	+0.1
2,946,348	-		GFF2885	0.29	+1.8
2,946,350	+		GFF2885	0.29	-1.7
2,946,353	+		GFF2885	0.29	+0.7
2,946,353	+		GFF2885	0.29	+1.6
2,946,353	+		GFF2885	0.29	-1.8
2,946,353	+		GFF2885	0.29	+0.4
2,946,353	+		GFF2885	0.29	-0.6
2,946,353	+		GFF2885	0.29	+0.1
2,946,353	-		GFF2885	0.29	-0.8
2,946,358	-		GFF2885	0.30	-0.5
2,946,387	+		GFF2885	0.33	-1.2
2,946,395	-		GFF2885	0.34	+0.2
2,946,397	-		GFF2885	0.34	-0.9
2,946,406	+		GFF2885	0.35	-1.8
2,946,408	+		GFF2885	0.35	+0.0
2,946,415	-		GFF2885	0.36	-1.2
2,946,442	+		GFF2885	0.38	-0.0
2,946,478	+		GFF2885	0.42	+0.5
2,946,478	+		GFF2885	0.42	-0.5
2,946,478	+		GFF2885	0.42	-0.3
2,946,478	-		GFF2885	0.42	-1.6
2,946,478	-		GFF2885	0.42	+1.0
2,946,478	-		GFF2885	0.42	-0.3
2,946,478	-		GFF2885	0.42	+0.9
2,946,486	-		GFF2885	0.43	+1.2
2,946,486	-		GFF2885	0.43	+1.6
2,946,486	-		GFF2885	0.43	-0.6
2,946,486	-		GFF2885	0.43	-0.8
2,946,532	-		GFF2885	0.47	-1.6
2,946,542	-		GFF2885	0.48	-0.1
2,946,552	+		GFF2885	0.49	-1.3
2,946,552	-		GFF2885	0.49	-1.6
2,946,552	-		GFF2885	0.49	+0.4
2,946,560	-		GFF2885	0.50	-1.2
2,946,560	-		GFF2885	0.50	-0.3
2,946,560	-		GFF2885	0.50	+1.5
2,946,570	-		GFF2885	0.51	+1.3
2,946,570	-		GFF2885	0.51	+1.1
2,946,570	-		GFF2885	0.51	-0.6
2,946,594	-		GFF2885	0.54	-0.9
2,946,597	+		GFF2885	0.54	-1.3
2,946,607	+		GFF2885	0.55	+0.9
2,946,607	+		GFF2885	0.55	-0.3
2,946,615	-		GFF2885	0.56	-0.0
2,946,618	+		GFF2885	0.56	+0.7
2,946,633	+		GFF2885	0.58	-0.3
2,946,636	+		GFF2885	0.58	+0.4
2,946,641	+		GFF2885	0.58	+1.0
2,946,641	+		GFF2885	0.58	-1.9
2,946,644	-		GFF2885	0.59	+0.1
2,946,644	-		GFF2885	0.59	+0.2
2,946,646	+		GFF2885	0.59	-1.0
2,946,649	-		GFF2885	0.59	+0.2
2,946,651	+		GFF2885	0.59	-0.3
2,946,651	+		GFF2885	0.59	+1.0
2,946,651	+		GFF2885	0.59	+0.9
2,946,659	-		GFF2885	0.60	+0.2
2,946,659	-		GFF2885	0.60	-0.5
2,946,659	-		GFF2885	0.60	-1.9
2,946,659	-		GFF2885	0.60	-1.9
2,946,659	-		GFF2885	0.60	+0.4
2,946,659	-		GFF2885	0.60	-0.1
2,946,659	-		GFF2885	0.60	+0.3
2,946,659	-		GFF2885	0.60	-1.1
2,946,684	+		GFF2885	0.63	+0.6
2,946,684	+		GFF2885	0.63	-1.1
2,946,690	-		GFF2885	0.63	+0.8
2,946,690	-		GFF2885	0.63	-0.7
2,946,692	-		GFF2885	0.64	+0.5
2,946,716	+		GFF2885	0.66	-0.3
2,946,722	+		GFF2885	0.67	+0.2
2,946,730	-		GFF2885	0.67	+1.0
2,946,730	-		GFF2885	0.67	-1.6
2,946,739	-		GFF2885	0.68	-0.8
2,946,747	-		GFF2885	0.69	+0.4
2,946,759	+		GFF2885	0.70	-0.9
2,946,762	+		GFF2885	0.71	+0.7
2,946,769	-		GFF2885	0.71	+0.0
2,946,780	-		GFF2885	0.73	+0.4
2,946,788	+		GFF2885	0.73	-0.6
2,946,805	+		GFF2885	0.75	+0.1
2,946,811	+		GFF2885	0.76	+0.4
2,946,811	+		GFF2885	0.76	+0.0
2,946,811	+		GFF2885	0.76	+0.1
2,946,819	-		GFF2885	0.76	+0.5
2,946,819	-		GFF2885	0.76	+0.0
2,946,821	+		GFF2885	0.77	+0.0
2,946,821	+		GFF2885	0.77	-0.3
2,946,829	-		GFF2885	0.77	+0.2
2,946,829	-		GFF2885	0.77	-1.1
2,946,829	-		GFF2885	0.77	+0.3
2,946,843	+		GFF2885	0.79	+0.0
2,946,887	-		GFF2885	0.83	-0.3
2,946,887	-		GFF2885	0.83	-0.4
2,946,890	+		GFF2885	0.84	-1.8
2,946,900	+		GFF2885	0.85	-0.6
2,946,918	-		GFF2885	0.86	-0.6
2,946,921	+		GFF2885	0.87	+1.3
2,946,921	+		GFF2885	0.87	+0.4
2,946,924	-		GFF2885	0.87	-1.2
2,946,947	+		GFF2885	0.89	+1.0
2,946,952	-		GFF2885	0.90	+0.8
2,946,959	+				-0.3
2,946,959	+				-0.2
2,946,962	-				+0.8
2,946,988	-				+0.1
2,947,007	-				+1.0
2,947,094	-				-1.2
2,947,107	+				+0.2
2,947,117	+				+0.2
2,947,117	-				-0.9
2,947,124	+				-0.5
2,947,124	+				+0.1
2,947,124	+				-1.0
2,947,124	+				-0.1
2,947,124	+				+0.2
2,947,124	+				+0.5
2,947,124	-				-1.2
2,947,132	-				+1.1
2,947,132	-				-1.2
2,947,134	+				-0.6
2,947,211	-				-0.9
2,947,263	+		GFF2886	0.12	-0.9
2,947,282	+		GFF2886	0.14	-0.1
2,947,289	-		GFF2886	0.16	-1.1
2,947,299	+		GFF2886	0.17	-2.4
2,947,306	+		GFF2886	0.18	-0.0
2,947,318	+		GFF2886	0.20	-2.5
2,947,325	+		GFF2886	0.21	+1.7
2,947,326	-		GFF2886	0.21	-0.1
2,947,328	-		GFF2886	0.21	+0.5
2,947,333	-		GFF2886	0.22	+0.0
2,947,350	+		GFF2886	0.25	-1.8
2,947,350	+		GFF2886	0.25	+0.2
2,947,353	-		GFF2886	0.25	-0.9
2,947,353	-		GFF2886	0.25	-0.6
2,947,358	-		GFF2886	0.26	-0.2
2,947,384	+		GFF2886	0.30	-1.2
2,947,387	+		GFF2886	0.30	-0.6
2,947,387	+		GFF2886	0.30	+0.7
2,947,387	+		GFF2886	0.30	+1.6
2,947,387	+		GFF2886	0.30	-0.3
2,947,387	+		GFF2886	0.30	+0.2
2,947,387	+		GFF2886	0.30	-0.3
2,947,387	+		GFF2886	0.30	+0.6
2,947,387	+		GFF2886	0.30	-0.2
2,947,387	+		GFF2886	0.30	-0.3
2,947,387	+		GFF2886	0.30	-1.2
2,947,387	+		GFF2886	0.30	-0.7
2,947,387	+		GFF2886	0.30	+0.7
2,947,387	+		GFF2886	0.30	-0.4
2,947,387	+		GFF2886	0.30	-0.1
2,947,387	+		GFF2886	0.30	-0.5
2,947,387	+		GFF2886	0.30	+0.4
2,947,395	-		GFF2886	0.31	-0.3
2,947,395	-		GFF2886	0.31	-2.0
2,947,395	-		GFF2886	0.31	-1.0
2,947,395	-		GFF2886	0.31	-0.4
2,947,395	-		GFF2886	0.31	+0.6
2,947,395	-		GFF2886	0.31	-0.8
2,947,395	-		GFF2886	0.31	-0.9
2,947,395	-		GFF2886	0.31	+0.9
2,947,395	-		GFF2886	0.31	-0.2
2,947,395	-		GFF2886	0.31	+0.8
2,947,395	-		GFF2886	0.31	-0.1
2,947,395	-		GFF2886	0.31	+0.1
2,947,395	-		GFF2886	0.31	-0.3
2,947,395	-		GFF2886	0.31	+0.5
2,947,395	-		GFF2886	0.31	-0.9
2,947,395	-		GFF2886	0.31	+0.2
2,947,395	-		GFF2886	0.31	-0.3
2,947,395	-		GFF2886	0.31	-1.9
2,947,395	-		GFF2886	0.31	+0.2
2,947,443	-		GFF2886	0.39	-0.4
2,947,443	-		GFF2886	0.39	-0.8
2,947,443	-		GFF2886	0.39	-1.1
2,947,443	-		GFF2886	0.39	+0.0
2,947,449	+		GFF2886	0.39	-1.4
2,947,449	+		GFF2886	0.39	-0.7
2,947,457	-		GFF2886	0.41	-0.5
2,947,500	+		GFF2886	0.47	-0.3
2,947,512	+		GFF2886	0.49	+0.6
2,947,516	+		GFF2886	0.49	+0.4
2,947,520	-		GFF2886	0.50	-0.5
2,947,528	+		GFF2886	0.51	+1.2
2,947,615	-		GFF2886	0.64	-0.5
2,947,618	+		GFF2886	0.65	-0.7
2,947,634	-		GFF2886	0.67	-0.1
2,947,637	-		GFF2886	0.68	-0.1
2,947,677	-		GFF2886	0.74	+0.5
2,947,684	-		GFF2886	0.75	-0.3
2,947,695	-		GFF2886	0.76	+0.5
2,947,717	+		GFF2886	0.80	+0.7
2,947,717	+		GFF2886	0.80	-0.5
2,947,717	+		GFF2886	0.80	-1.2
2,947,724	+		GFF2886	0.81	-0.2
2,947,724	+		GFF2886	0.81	+0.8
2,947,725	-		GFF2886	0.81	-1.2
2,947,732	-		GFF2886	0.82	-1.2
2,947,740	-		GFF2886	0.83	+0.2
2,947,741	-		GFF2886	0.83	-0.8
2,947,750	-		GFF2886	0.84	-0.2
2,947,755	-		GFF2886	0.85	+0.1
2,947,821	+				+0.6
2,947,821	+				+0.2
2,947,821	+				-0.6
2,947,821	+				+0.1
2,947,826	+				-1.9
2,947,829	-				-0.3
2,947,829	-				+0.3
2,947,829	-				-1.0
2,947,829	-				-0.3
2,947,829	-				-0.0
2,947,829	-				+0.8
2,947,836	+				-1.3
2,947,839	-				+0.4
2,947,849	+				-2.2
2,947,891	-				-1.3
2,947,907	-				+0.2
2,947,966	+				+0.0
2,947,971	+				-1.3
2,947,971	+				-1.4
2,947,971	+				-1.7
2,947,971	+				+0.0
2,947,971	+				+0.5
2,947,971	+				-0.5
2,947,979	+				+0.9
2,947,979	+				+0.6
2,947,979	+				+0.2
2,947,979	+				+0.5
2,947,979	+				+0.0
2,947,979	-				-1.4
2,947,979	-				-0.0
2,947,979	-				-2.1
2,947,979	-				+0.1
2,947,980	-				-0.7
2,947,980	-				+1.0
2,947,989	-				-1.5
2,948,003	+				-0.2
2,948,011	+				-1.7
2,948,011	+				-1.1
2,948,011	+				+0.3
2,948,017	-				-0.3
2,948,019	-				-1.0
2,948,019	-				-1.2
2,948,019	-				-1.1
2,948,019	-				-0.6
2,948,019	-				-0.5
2,948,021	+				-0.8
2,948,021	+				+1.7
2,948,021	+				+0.3
2,948,021	-				+0.9
2,948,027	-				-0.3
2,948,028	+				-1.4
2,948,028	+				-0.9
2,948,028	+				+0.5
2,948,028	+				-1.3
2,948,028	+				+1.1
2,948,028	+				-0.7
2,948,036	-				+0.1
2,948,036	-				+0.0
2,948,036	-				-1.6
2,948,036	-				-1.6
2,948,036	-				+0.3
2,948,036	-				-1.3
2,948,038	+				-2.3
2,948,045	+				-1.6
2,948,045	+				-0.2
2,948,046	-				-0.7
2,948,053	-				-0.3
2,948,063	-				-0.6
2,948,063	-				-1.4
2,948,079	+				+1.5
2,948,132	-				+0.4
2,948,148	+				+0.4
2,948,150	+				+0.0
2,948,157	-				-1.1
2,948,158	+				+0.5
2,948,158	-				+0.2
2,948,225	-		GFF2887	0.13	-0.2
2,948,225	-		GFF2887	0.13	+0.9
2,948,258	+		GFF2887	0.16	-1.5
2,948,266	-		GFF2887	0.16	+1.8
2,948,272	+		GFF2887	0.17	-0.6
2,948,280	-		GFF2887	0.17	-1.5
2,948,307	-		GFF2887	0.19	+0.4
2,948,335	+		GFF2887	0.21	+0.5
2,948,343	-		GFF2887	0.22	-0.9
2,948,350	+		GFF2887	0.23	+0.7
2,948,350	+		GFF2887	0.23	+0.1
2,948,355	+		GFF2887	0.23	-1.9
2,948,358	-		GFF2887	0.23	+0.9
2,948,363	-		GFF2887	0.24	+0.7
2,948,383	+		GFF2887	0.25	-0.2
2,948,384	-		GFF2887	0.25	-0.6
2,948,391	-		GFF2887	0.26	-0.2
2,948,409	+		GFF2887	0.27	-0.8
2,948,409	+		GFF2887	0.27	-2.5
2,948,417	-		GFF2887	0.28	+0.8
2,948,417	-		GFF2887	0.28	-0.1
2,948,417	-		GFF2887	0.28	-1.7
2,948,432	-		GFF2887	0.29	-0.3
2,948,436	-		GFF2887	0.29	+0.0
2,948,440	-		GFF2887	0.29	+0.1
2,948,450	-		GFF2887	0.30	-0.7
2,948,457	+		GFF2887	0.31	-0.3
2,948,466	+		GFF2887	0.31	+1.2
2,948,473	-		GFF2887	0.32	-1.4
2,948,498	+		GFF2887	0.34	+1.4
2,948,503	+		GFF2887	0.34	-1.0
2,948,507	+		GFF2887	0.34	+0.3
2,948,508	+		GFF2887	0.34	-2.7
2,948,508	+		GFF2887	0.34	+0.3
2,948,511	-		GFF2887	0.35	+0.1
2,948,516	-		GFF2887	0.35	-0.2
2,948,516	-		GFF2887	0.35	-1.0
2,948,526	-		GFF2887	0.36	-0.9
2,948,526	-		GFF2887	0.36	-0.0
2,948,526	-		GFF2887	0.36	+0.5
2,948,527	-		GFF2887	0.36	-1.2
2,948,530	-		GFF2887	0.36	+0.0
2,948,533	+		GFF2887	0.36	-1.6
2,948,542	+		GFF2887	0.37	-1.3
2,948,550	-		GFF2887	0.38	+0.9
2,948,560	+		GFF2887	0.38	-0.8
2,948,567	+		GFF2887	0.39	-0.2
2,948,575	+		GFF2887	0.39	-0.8
2,948,578	-		GFF2887	0.40	-1.0
2,948,619	+		GFF2887	0.43	+0.1
2,948,626	-		GFF2887	0.43	-0.4
2,948,632	-		GFF2887	0.44	+1.1
2,948,727	-		GFF2887	0.51	-0.9
2,948,734	+		GFF2887	0.51	-1.6
2,948,739	+		GFF2887	0.52	-1.9
2,948,742	-		GFF2887	0.52	-0.7
2,948,744	+		GFF2887	0.52	+0.6
2,948,751	+		GFF2887	0.53	-1.1
2,948,751	+		GFF2887	0.53	+1.2
2,948,751	+		GFF2887	0.53	-1.4
2,948,752	-		GFF2887	0.53	+0.7
2,948,752	-		GFF2887	0.53	-0.5
2,948,759	-		GFF2887	0.53	-0.5
2,948,759	-		GFF2887	0.53	+0.5
2,948,770	+		GFF2887	0.54	+0.2
2,948,770	+		GFF2887	0.54	+0.3
2,948,778	-		GFF2887	0.55	+0.2
2,948,778	-		GFF2887	0.55	-0.1
2,948,784	+		GFF2887	0.55	+1.6
2,948,784	+		GFF2887	0.55	-0.1
2,948,792	-		GFF2887	0.56	-0.3
2,948,801	+		GFF2887	0.56	+1.4
2,948,814	+		GFF2887	0.57	+0.1
2,948,822	-		GFF2887	0.58	-1.8
2,948,825	+		GFF2887	0.58	-0.8
2,948,839	-		GFF2887	0.59	-1.6
2,948,839	-		GFF2887	0.59	+0.1