Strain Fitness in Sphingobium sp. HT1-2 around GFF2884

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,944,160	+		GFF2883	0.14	-1.7
2,944,168	-		GFF2883	0.15	-2.1
2,944,169	+		GFF2883	0.15	-0.7
2,944,169	+		GFF2883	0.15	+0.2
2,944,181	-		GFF2883	0.16	+0.7
2,944,205	+		GFF2883	0.18	-0.2
2,944,241	-		GFF2883	0.21	-1.6
2,944,278	+		GFF2883	0.24	-1.0
2,944,278	+		GFF2883	0.24	-1.7
2,944,283	+		GFF2883	0.25	+0.4
2,944,283	+		GFF2883	0.25	+0.3
2,944,285	-		GFF2883	0.25	-0.3
2,944,291	-		GFF2883	0.26	-0.3
2,944,300	+		GFF2883	0.26	-1.7
2,944,300	+		GFF2883	0.26	-0.2
2,944,312	-		GFF2883	0.27	+0.6
2,944,312	-		GFF2883	0.27	-0.4
2,944,321	-		GFF2883	0.28	-0.1
2,944,330	+		GFF2883	0.29	-0.6
2,944,330	+		GFF2883	0.29	-0.1
2,944,337	+		GFF2883	0.29	-0.2
2,944,337	+		GFF2883	0.29	-0.3
2,944,337	+		GFF2883	0.29	-2.3
2,944,342	+		GFF2883	0.30	-0.6
2,944,342	+		GFF2883	0.30	-1.4
2,944,342	+		GFF2883	0.30	-0.2
2,944,345	-		GFF2883	0.30	+1.3
2,944,350	-		GFF2883	0.31	+0.7
2,944,350	-		GFF2883	0.31	-1.2
2,944,365	-		GFF2883	0.32	-0.2
2,944,373	+		GFF2883	0.33	-0.3
2,944,381	-		GFF2883	0.33	+0.7
2,944,381	-		GFF2883	0.33	+0.9
2,944,383	+		GFF2883	0.33	-0.4
2,944,383	+		GFF2883	0.33	-0.5
2,944,388	+		GFF2883	0.34	+0.1
2,944,391	-		GFF2883	0.34	-1.1
2,944,391	-		GFF2883	0.34	+0.0
2,944,391	-		GFF2883	0.34	+0.0
2,944,393	+		GFF2883	0.34	-1.2
2,944,396	-		GFF2883	0.35	-2.3
2,944,396	-		GFF2883	0.35	-2.3
2,944,411	-		GFF2883	0.36	-1.7
2,944,417	+		GFF2883	0.36	-0.3
2,944,425	-		GFF2883	0.37	-2.0
2,944,434	+		GFF2883	0.38	-1.3
2,944,435	-		GFF2883	0.38	-2.3
2,944,440	-		GFF2883	0.38	-0.2
2,944,451	-		GFF2883	0.39	-1.4
2,944,466	-		GFF2883	0.41	-1.8
2,944,466	-		GFF2883	0.41	+0.4
2,944,471	-		GFF2883	0.41	-0.6
2,944,471	-		GFF2883	0.41	-0.6
2,944,477	+		GFF2883	0.41	-1.3
2,944,509	+		GFF2883	0.44	-0.1
2,944,518	+		GFF2883	0.45	-0.5
2,944,521	-		GFF2883	0.45	+1.6
2,944,526	+		GFF2883	0.46	+1.1
2,944,526	-		GFF2883	0.46	+0.9
2,944,526	-		GFF2883	0.46	-0.3
2,944,534	-		GFF2883	0.46	-1.2
2,944,534	-		GFF2883	0.46	-1.7
2,944,535	-		GFF2883	0.46	+1.1
2,944,540	-		GFF2883	0.47	+1.0
2,944,540	-		GFF2883	0.47	-0.7
2,944,540	-		GFF2883	0.47	-1.2
2,944,579	+		GFF2883	0.50	-0.8
2,944,594	-		GFF2883	0.52	-0.7
2,944,603	-		GFF2883	0.52	+0.2
2,944,686	-		GFF2883	0.59	+0.5
2,944,698	+		GFF2883	0.60	+0.5
2,944,702	+		GFF2883	0.61	+0.7
2,944,726	-		GFF2883	0.63	+0.2
2,944,728	-		GFF2883	0.63	-0.5
2,944,747	+		GFF2883	0.65	+0.1
2,944,755	-		GFF2883	0.65	-0.5
2,944,759	-		GFF2883	0.66	-1.5
2,944,783	-		GFF2883	0.68	-1.0
2,944,793	+		GFF2883	0.69	-1.0
2,944,815	+		GFF2883	0.71	+1.5
2,944,818	-		GFF2883	0.71	-1.2
2,944,818	-		GFF2883	0.71	-1.5
2,944,820	+		GFF2883	0.71	-1.7
2,944,823	-		GFF2883	0.71	+0.2
2,944,834	+		GFF2883	0.72	+0.8
2,944,845	+		GFF2883	0.73	+0.2
2,944,845	+		GFF2883	0.73	-0.2
2,944,853	+		GFF2883	0.74	-0.2
2,944,853	-		GFF2883	0.74	+0.4
2,944,853	-		GFF2883	0.74	-2.0
2,944,855	+		GFF2883	0.74	+0.0
2,944,887	+		GFF2883	0.77	+1.2
2,944,892	+		GFF2883	0.77	-0.4
2,944,892	+		GFF2883	0.77	-2.5
2,944,892	+		GFF2883	0.77	-0.5
2,944,892	+		GFF2883	0.77	-0.6
2,944,892	+		GFF2883	0.77	-1.9
2,944,892	+		GFF2883	0.77	+0.3
2,944,892	+		GFF2883	0.77	-1.7
2,944,892	+		GFF2883	0.77	-1.0
2,944,892	+		GFF2883	0.77	-1.4
2,944,892	+		GFF2883	0.77	-0.2
2,944,892	+		GFF2883	0.77	-0.5
2,944,892	+		GFF2883	0.77	-1.5
2,944,892	+		GFF2883	0.77	-1.4
2,944,895	-		GFF2883	0.77	-0.5
2,944,895	-		GFF2883	0.77	+1.5
2,944,900	-		GFF2883	0.78	+0.3
2,944,900	-		GFF2883	0.78	+0.0
2,944,900	-		GFF2883	0.78	+0.4
2,944,900	-		GFF2883	0.78	+0.2
2,944,900	-		GFF2883	0.78	+0.5
2,944,900	-		GFF2883	0.78	-1.0
2,944,900	-		GFF2883	0.78	-0.2
2,944,900	-		GFF2883	0.78	+0.0
2,944,900	-		GFF2883	0.78	+0.8
2,944,900	-		GFF2883	0.78	+0.7
2,944,900	-		GFF2883	0.78	-1.7
2,944,900	-		GFF2883	0.78	-0.7
2,944,918	+		GFF2883	0.79	-0.6
2,944,921	-		GFF2883	0.80	-1.6
2,944,921	-		GFF2883	0.80	-0.9
2,944,921	-		GFF2883	0.80	+1.0
2,944,921	-		GFF2883	0.80	-1.3
2,944,923	+		GFF2883	0.80	-1.2
2,944,964	+		GFF2883	0.83	+0.2
2,944,972	-		GFF2883	0.84	+1.5
2,944,972	-		GFF2883	0.84	+1.0
2,944,986	+		GFF2883	0.85	-0.5
2,945,007	-		GFF2883	0.87	+0.4
2,945,014	+		GFF2883	0.88	-1.5
2,945,015	+		GFF2883	0.88	+1.2
2,945,016	+		GFF2883	0.88	+0.4
2,945,022	-		GFF2883	0.88	-1.6
2,945,022	-		GFF2883	0.88	+0.7
2,945,028	+		GFF2883	0.89	+0.5
2,945,038	+		GFF2883	0.90	-1.6
2,945,073	-				+0.9
2,945,104	-				+1.1
2,945,127	+				+0.1
2,945,160	+				-0.4
2,945,180	-				-1.8
2,945,242	+				-0.1
2,945,249	-		GFF2884	0.11	-0.3
2,945,259	-		GFF2884	0.12	-0.8
2,945,259	-		GFF2884	0.12	-0.6
2,945,265	+		GFF2884	0.12	-0.1
2,945,273	-		GFF2884	0.13	-1.0
2,945,283	-		GFF2884	0.14	-0.4
2,945,372	-		GFF2884	0.24	-1.5
2,945,409	-		GFF2884	0.29	+0.1
2,945,412	-		GFF2884	0.29	-0.0
2,945,418	+		GFF2884	0.30	+0.6
2,945,418	+		GFF2884	0.30	-0.5
2,945,420	+		GFF2884	0.30	-2.0
2,945,426	-		GFF2884	0.30	+0.6
2,945,426	-		GFF2884	0.30	+1.1
2,945,499	+		GFF2884	0.39	-2.0
2,945,504	+		GFF2884	0.39	+0.2
2,945,579	+		GFF2884	0.48	-1.3
2,945,613	-		GFF2884	0.51	+0.4
2,945,615	+		GFF2884	0.52	+0.7
2,945,615	+		GFF2884	0.52	+0.8
2,945,615	+		GFF2884	0.52	-0.6
2,945,615	+		GFF2884	0.52	-1.0
2,945,615	+		GFF2884	0.52	-0.3
2,945,615	+		GFF2884	0.52	-0.3
2,945,615	+		GFF2884	0.52	-0.4
2,945,617	-		GFF2884	0.52	-1.1
2,945,636	+		GFF2884	0.54	-0.6
2,945,647	+		GFF2884	0.55	-0.2
2,945,647	+		GFF2884	0.55	+0.4
2,945,647	+		GFF2884	0.55	+1.3
2,945,647	+		GFF2884	0.55	+1.4
2,945,647	+		GFF2884	0.55	-0.7
2,945,650	-		GFF2884	0.55	+0.3
2,945,650	-		GFF2884	0.55	+0.2
2,945,655	-		GFF2884	0.56	+0.7
2,945,655	-		GFF2884	0.56	+0.2
2,945,655	-		GFF2884	0.56	+0.9
2,945,655	-		GFF2884	0.56	+1.9
2,945,655	-		GFF2884	0.56	+0.4
2,945,655	-		GFF2884	0.56	-0.2
2,945,655	-		GFF2884	0.56	+1.5
2,945,657	+		GFF2884	0.56	+0.0
2,945,657	+		GFF2884	0.56	+1.2
2,945,682	+		GFF2884	0.59	-0.2
2,945,718	+		GFF2884	0.63	+1.1
2,945,719	+		GFF2884	0.63	-0.4
2,945,727	-		GFF2884	0.64	-2.0
2,945,729	+		GFF2884	0.64	-1.2
2,945,737	-		GFF2884	0.65	-1.8
2,945,739	+		GFF2884	0.65	-0.3
2,945,739	+		GFF2884	0.65	+0.0
2,945,739	+		GFF2884	0.65	-0.3
2,945,746	-		GFF2884	0.66	-1.2
2,945,747	-		GFF2884	0.66	+0.2
2,945,754	+		GFF2884	0.67	+0.4
2,945,763	+		GFF2884	0.68	-0.5
2,945,766	-		GFF2884	0.68	+0.0
2,945,771	-		GFF2884	0.69	-0.2
2,945,799	-		GFF2884	0.72	-2.6
2,945,804	-		GFF2884	0.73	-0.2
2,945,825	-		GFF2884	0.75	-1.6
2,945,830	-		GFF2884	0.76	-0.8
2,945,856	+		GFF2884	0.79	-0.2
2,945,856	+		GFF2884	0.79	+0.1
2,945,856	+		GFF2884	0.79	-0.3
2,945,856	+		GFF2884	0.79	-0.4
2,945,856	+		GFF2884	0.79	+1.3
2,945,864	-		GFF2884	0.79	-0.5
2,945,864	-		GFF2884	0.79	+0.2
2,945,864	-		GFF2884	0.79	+0.6
2,945,903	+		GFF2884	0.84	+0.9
2,945,905	+		GFF2884	0.84	+0.2
2,945,908	-		GFF2884	0.84	-0.0
2,945,922	+		GFF2884	0.86	-1.5
2,945,922	+		GFF2884	0.86	+0.8
2,945,922	+		GFF2884	0.86	+1.2
2,945,922	+		GFF2884	0.86	+0.3
2,945,922	+		GFF2884	0.86	+0.8
2,945,922	+		GFF2884	0.86	+0.2
2,945,922	+		GFF2884	0.86	+1.3
2,945,922	+		GFF2884	0.86	-0.8
2,945,922	+		GFF2884	0.86	+0.5
2,945,922	+		GFF2884	0.86	-0.1
2,945,922	+		GFF2884	0.86	+0.1
2,945,922	+		GFF2884	0.86	-0.9
2,945,922	+		GFF2884	0.86	-0.1
2,945,930	-		GFF2884	0.87	+0.2
2,945,930	-		GFF2884	0.87	+0.5
2,945,930	-		GFF2884	0.87	+0.8
2,945,930	-		GFF2884	0.87	-0.4
2,945,930	-		GFF2884	0.87	-0.6
2,945,930	-		GFF2884	0.87	+0.7
2,945,930	-		GFF2884	0.87	-0.3
2,945,930	-		GFF2884	0.87	-1.0
2,945,930	-		GFF2884	0.87	-0.2
2,945,930	-		GFF2884	0.87	-1.8
2,945,930	-		GFF2884	0.87	-0.1
2,945,930	-		GFF2884	0.87	-2.9
2,945,930	-		GFF2884	0.87	+0.9
2,945,957	+		GFF2884	0.90	-0.3
2,945,965	-				-1.5
2,945,965	-				-0.4
2,945,965	-				-0.3
2,946,023	+				-2.3
2,946,023	+				+0.5
2,946,023	-				-1.1
2,946,031	-				-0.6
2,946,031	-				-1.2
2,946,031	-				-1.9
2,946,031	-				-1.4
2,946,031	-				-0.2
2,946,043	+				+0.8
2,946,051	-				+0.8
2,946,054	+				-2.0
2,946,054	+				+0.0
2,946,055	+				-0.5
2,946,063	-				-0.7
2,946,063	-				+1.1
2,946,068	-				-0.6
2,946,078	+				-1.5
2,946,078	+				+0.7
2,946,078	+				+0.5
2,946,086	-				-0.8
2,946,086	-				-0.5
2,946,086	-				+0.5
2,946,132	+				-1.7
2,946,137	+				-0.3
2,946,137	+				-0.7
2,946,137	+				-0.2
2,946,137	+				+0.3
2,946,140	-				-1.0
2,946,145	-				-0.6
2,946,145	-				-1.2
2,946,160	+				-0.0
2,946,160	+				-1.6
2,946,165	+		GFF2885	0.10	+0.1
2,946,165	+		GFF2885	0.10	-1.3
2,946,168	-		GFF2885	0.11	-0.2
2,946,173	-		GFF2885	0.11	-0.8
2,946,188	-		GFF2885	0.13	+0.8
2,946,209	+		GFF2885	0.15	-0.6
2,946,218	-		GFF2885	0.16	+0.4
2,946,220	-		GFF2885	0.16	-0.3
2,946,248	+		GFF2885	0.19	+0.6
2,946,313	+		GFF2885	0.25	-0.1
2,946,317	-		GFF2885	0.26	-1.7
2,946,317	-		GFF2885	0.26	+0.3
2,946,321	+		GFF2885	0.26	-0.8
2,946,340	+		GFF2885	0.28	-0.0
2,946,340	+		GFF2885	0.28	-1.3
2,946,340	+		GFF2885	0.28	+0.2
2,946,340	+		GFF2885	0.28	+0.2
2,946,340	+		GFF2885	0.28	-2.5
2,946,348	-		GFF2885	0.29	-0.2
2,946,348	-		GFF2885	0.29	+0.2
2,946,348	-		GFF2885	0.29	+0.1
2,946,348	-		GFF2885	0.29	+1.8
2,946,350	+		GFF2885	0.29	-1.7
2,946,353	+		GFF2885	0.29	+0.7
2,946,353	+		GFF2885	0.29	+1.6
2,946,353	+		GFF2885	0.29	-1.8
2,946,353	+		GFF2885	0.29	+0.4
2,946,353	+		GFF2885	0.29	-0.6
2,946,353	+		GFF2885	0.29	+0.1
2,946,353	-		GFF2885	0.29	-0.8
2,946,358	-		GFF2885	0.30	-0.5
2,946,387	+		GFF2885	0.33	-1.2
2,946,395	-		GFF2885	0.34	+0.2
2,946,397	-		GFF2885	0.34	-0.9
2,946,406	+		GFF2885	0.35	-1.8
2,946,408	+		GFF2885	0.35	+0.0
2,946,415	-		GFF2885	0.36	-1.2
2,946,442	+		GFF2885	0.38	-0.0
2,946,478	+		GFF2885	0.42	+0.5
2,946,478	+		GFF2885	0.42	-0.5
2,946,478	+		GFF2885	0.42	-0.3
2,946,478	-		GFF2885	0.42	-1.6
2,946,478	-		GFF2885	0.42	+1.0
2,946,478	-		GFF2885	0.42	-0.3
2,946,478	-		GFF2885	0.42	+0.9
2,946,486	-		GFF2885	0.43	+1.2
2,946,486	-		GFF2885	0.43	+1.6
2,946,486	-		GFF2885	0.43	-0.6
2,946,486	-		GFF2885	0.43	-0.8
2,946,532	-		GFF2885	0.47	-1.6
2,946,542	-		GFF2885	0.48	-0.1
2,946,552	+		GFF2885	0.49	-1.3
2,946,552	-		GFF2885	0.49	-1.6
2,946,552	-		GFF2885	0.49	+0.4
2,946,560	-		GFF2885	0.50	-1.2
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2,946,959	+				-0.3
2,946,959	+				-0.2
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2,946,988	-				+0.1
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