Strain Fitness in Sphingobium sp. HT1-2 around GFF2880

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,938,210	-		GFF2879	0.47	-1.4
2,938,215	-		GFF2879	0.47	+0.2
2,938,226	-		GFF2879	0.48	+2.0
2,938,298	-		GFF2879	0.53	+0.5
2,938,298	-		GFF2879	0.53	-0.8
2,938,303	+		GFF2879	0.53	+0.1
2,938,303	+		GFF2879	0.53	-0.1
2,938,311	-		GFF2879	0.54	+0.1
2,938,366	+		GFF2879	0.57	-0.1
2,938,374	-		GFF2879	0.58	-0.2
2,938,374	-		GFF2879	0.58	-1.6
2,938,374	-		GFF2879	0.58	-1.4
2,938,374	-		GFF2879	0.58	-0.4
2,938,393	-		GFF2879	0.59	+0.7
2,938,396	+		GFF2879	0.59	-1.1
2,938,406	+		GFF2879	0.60	-1.0
2,938,406	+		GFF2879	0.60	-0.7
2,938,408	+		GFF2879	0.60	+0.5
2,938,408	+		GFF2879	0.60	+0.2
2,938,418	+		GFF2879	0.61	-0.3
2,938,426	-		GFF2879	0.61	-0.5
2,938,426	-		GFF2879	0.61	-0.2
2,938,426	-		GFF2879	0.61	+0.7
2,938,436	-		GFF2879	0.62	+0.0
2,938,467	+		GFF2879	0.64	+0.2
2,938,467	+		GFF2879	0.64	-1.2
2,938,467	+		GFF2879	0.64	-0.2
2,938,467	+		GFF2879	0.64	+0.2
2,938,475	-		GFF2879	0.65	-1.8
2,938,475	-		GFF2879	0.65	-0.8
2,938,475	-		GFF2879	0.65	-0.6
2,938,494	+		GFF2879	0.66	-0.8
2,938,502	-		GFF2879	0.66	+1.0
2,938,503	-		GFF2879	0.66	-1.1
2,938,566	+		GFF2879	0.71	+0.3
2,938,567	+		GFF2879	0.71	-0.6
2,938,567	+		GFF2879	0.71	-1.3
2,938,574	-		GFF2879	0.71	-2.0
2,938,611	+		GFF2879	0.74	+1.4
2,938,611	-		GFF2879	0.74	+0.4
2,938,618	+		GFF2879	0.74	-0.3
2,938,626	-		GFF2879	0.75	-0.3
2,938,635	+		GFF2879	0.75	+0.9
2,938,635	+		GFF2879	0.75	+0.5
2,938,635	+		GFF2879	0.75	-0.3
2,938,643	-		GFF2879	0.76	-1.6
2,938,643	-		GFF2879	0.76	+0.3
2,938,643	-		GFF2879	0.76	-1.2
2,938,643	-		GFF2879	0.76	-0.3
2,938,646	+		GFF2879	0.76	-1.3
2,938,654	-		GFF2879	0.77	+0.1
2,938,654	-		GFF2879	0.77	-0.0
2,938,654	-		GFF2879	0.77	-0.3
2,938,661	+		GFF2879	0.77	+1.6
2,938,661	-		GFF2879	0.77	-0.6
2,938,664	-		GFF2879	0.77	-3.2
2,938,684	-		GFF2879	0.79	+1.5
2,938,686	+		GFF2879	0.79	-0.1
2,938,686	+		GFF2879	0.79	-2.2
2,938,686	+		GFF2879	0.79	+0.2
2,938,686	+		GFF2879	0.79	+0.2
2,938,686	+		GFF2879	0.79	-1.0
2,938,686	+		GFF2879	0.79	+0.0
2,938,686	+		GFF2879	0.79	+1.5
2,938,686	+		GFF2879	0.79	+0.0
2,938,686	+		GFF2879	0.79	+0.2
2,938,686	+		GFF2879	0.79	+0.8
2,938,686	+		GFF2879	0.79	-0.1
2,938,686	+		GFF2879	0.79	-1.7
2,938,686	+		GFF2879	0.79	-0.3
2,938,694	-		GFF2879	0.79	+1.4
2,938,694	-		GFF2879	0.79	-0.6
2,938,694	-		GFF2879	0.79	-0.6
2,938,694	-		GFF2879	0.79	+0.3
2,938,694	-		GFF2879	0.79	-0.1
2,938,694	-		GFF2879	0.79	+0.4
2,938,694	-		GFF2879	0.79	+0.4
2,938,694	-		GFF2879	0.79	+0.2
2,938,694	-		GFF2879	0.79	-0.4
2,938,694	-		GFF2879	0.79	+0.3
2,938,694	-		GFF2879	0.79	+0.3
2,938,694	-		GFF2879	0.79	+0.2
2,938,694	-		GFF2879	0.79	-0.5
2,938,694	-		GFF2879	0.79	+0.8
2,938,709	+		GFF2879	0.80	-0.4
2,938,717	-		GFF2879	0.81	-0.3
2,938,717	-		GFF2879	0.81	-1.2
2,938,729	-		GFF2879	0.82	+1.4
2,938,737	+		GFF2879	0.82	+0.7
2,938,737	+		GFF2879	0.82	+0.2
2,938,737	+		GFF2879	0.82	-1.3
2,938,737	+		GFF2879	0.82	-0.3
2,938,737	+		GFF2879	0.82	-0.3
2,938,737	+		GFF2879	0.82	-1.2
2,938,737	+		GFF2879	0.82	-0.7
2,938,737	+		GFF2879	0.82	+1.5
2,938,742	+		GFF2879	0.82	-1.0
2,938,742	+		GFF2879	0.82	+0.1
2,938,745	-		GFF2879	0.83	-1.1
2,938,745	-		GFF2879	0.83	-0.6
2,938,747	+		GFF2879	0.83	-0.2
2,938,848	-		GFF2879	0.90	-0.6
2,938,880	+				-0.7
2,938,892	+				-0.4
2,938,892	+				-0.2
2,938,892	+				+0.3
2,938,898	-				-0.2
2,938,900	-				-2.8
2,938,956	+				+0.8
2,938,956	-				+0.2
2,938,956	-				+1.5
2,938,957	+				-2.0
2,939,001	+				+0.4
2,939,005	+				-0.7
2,939,008	-				-1.5
2,939,013	-				-1.0
2,939,015	+				+0.2
2,939,015	+				+0.3
2,939,015	+				+1.0
2,939,023	-				-0.6
2,939,055	-				-0.8
2,939,104	-				-2.5
2,939,136	-				+0.6
2,939,154	-				-0.4
2,939,206	+				+0.8
2,939,216	+				+0.1
2,939,216	+				-0.1
2,939,240	-				+0.5
2,939,259	+				+0.6
2,939,260	-				-0.5
2,939,267	-				+0.2
2,939,283	-				-1.9
2,939,285	+				-1.0
2,939,288	-				-2.3
2,939,292	+				+0.8
2,939,293	-				-1.5
2,939,293	-				+1.4
2,939,321	-		GFF2880	0.13	+0.4
2,939,339	+		GFF2880	0.15	-1.8
2,939,362	-		GFF2880	0.17	+0.4
2,939,369	+		GFF2880	0.18	-0.7
2,939,369	+		GFF2880	0.18	+0.3
2,939,369	+		GFF2880	0.18	-0.9
2,939,369	+		GFF2880	0.18	+0.7
2,939,377	-		GFF2880	0.19	-0.5
2,939,377	-		GFF2880	0.19	+0.4
2,939,377	-		GFF2880	0.19	-1.3
2,939,377	-		GFF2880	0.19	+0.9
2,939,377	-		GFF2880	0.19	-1.6
2,939,377	-		GFF2880	0.19	-0.3
2,939,377	-		GFF2880	0.19	-1.3
2,939,377	-		GFF2880	0.19	-0.5
2,939,377	-		GFF2880	0.19	-0.7
2,939,382	-		GFF2880	0.19	-1.9
2,939,382	-		GFF2880	0.19	+0.8
2,939,393	-		GFF2880	0.21	+0.7
2,939,407	-		GFF2880	0.22	-1.0
2,939,407	-		GFF2880	0.22	-0.0
2,939,418	+		GFF2880	0.23	-0.1
2,939,440	+		GFF2880	0.26	-0.5
2,939,440	+		GFF2880	0.26	+0.2
2,939,448	+		GFF2880	0.27	-0.2
2,939,451	-		GFF2880	0.27	+0.2
2,939,475	+		GFF2880	0.30	-1.8
2,939,498	+		GFF2880	0.32	-0.3
2,939,506	+		GFF2880	0.33	-1.3
2,939,506	+		GFF2880	0.33	-0.8
2,939,506	+		GFF2880	0.33	-0.6
2,939,506	-		GFF2880	0.33	+0.2
2,939,514	-		GFF2880	0.34	+0.9
2,939,536	-		GFF2880	0.37	-0.6
2,939,565	+		GFF2880	0.40	-0.9
2,939,567	-		GFF2880	0.40	-0.2
2,939,570	+		GFF2880	0.40	-1.8
2,939,584	+		GFF2880	0.42	-0.6
2,939,584	-		GFF2880	0.42	+0.3
2,939,598	+		GFF2880	0.44	+0.6
2,939,598	+		GFF2880	0.44	-1.8
2,939,603	+		GFF2880	0.44	+0.4
2,939,606	-		GFF2880	0.44	+0.7
2,939,606	-		GFF2880	0.44	+0.2
2,939,606	-		GFF2880	0.44	+0.0
2,939,606	-		GFF2880	0.44	+0.8
2,939,606	-		GFF2880	0.44	-0.3
2,939,606	-		GFF2880	0.44	-0.2
2,939,606	-		GFF2880	0.44	-0.8
2,939,607	+		GFF2880	0.45	-0.8
2,939,634	+		GFF2880	0.48	+0.9
2,939,640	+		GFF2880	0.48	-0.6
2,939,646	+		GFF2880	0.49	+0.4
2,939,646	+		GFF2880	0.49	-0.4
2,939,646	+		GFF2880	0.49	-1.2
2,939,646	+		GFF2880	0.49	+0.3
2,939,646	+		GFF2880	0.49	-0.1
2,939,646	+		GFF2880	0.49	+0.8
2,939,651	+		GFF2880	0.49	-1.6
2,939,654	-		GFF2880	0.50	+2.0
2,939,654	-		GFF2880	0.50	-0.6
2,939,654	-		GFF2880	0.50	-0.1
2,939,654	-		GFF2880	0.50	-0.1
2,939,654	-		GFF2880	0.50	-1.4
2,939,654	-		GFF2880	0.50	-0.6
2,939,654	-		GFF2880	0.50	+0.6
2,939,654	-		GFF2880	0.50	-0.1
2,939,654	-		GFF2880	0.50	+0.8
2,939,654	-		GFF2880	0.50	+0.4
2,939,657	+		GFF2880	0.50	-1.1
2,939,669	+		GFF2880	0.51	+0.9
2,939,669	+		GFF2880	0.51	+0.1
2,939,669	+		GFF2880	0.51	-0.3
2,939,669	+		GFF2880	0.51	-0.4
2,939,677	-		GFF2880	0.52	+0.8
2,939,677	-		GFF2880	0.52	+0.3
2,939,677	-		GFF2880	0.52	-0.6
2,939,689	+		GFF2880	0.54	+0.9
2,939,692	-		GFF2880	0.54	-0.3
2,939,692	-		GFF2880	0.54	-1.3
2,939,697	-		GFF2880	0.55	-2.2
2,939,698	-		GFF2880	0.55	-0.5
2,939,698	-		GFF2880	0.55	+0.7
2,939,708	-		GFF2880	0.56	-0.3
2,939,716	+		GFF2880	0.57	+0.2
2,939,718	+		GFF2880	0.57	-0.6
2,939,734	+		GFF2880	0.59	-0.8
2,939,742	+		GFF2880	0.60	+0.6
2,939,742	+		GFF2880	0.60	-0.6
2,939,743	+		GFF2880	0.60	-0.3
2,939,750	-		GFF2880	0.61	+0.5
2,939,750	-		GFF2880	0.61	-0.1
2,939,750	-		GFF2880	0.61	+0.2
2,939,755	-		GFF2880	0.61	-0.4
2,939,762	+		GFF2880	0.62	+0.4
2,939,765	-		GFF2880	0.62	-1.9
2,939,770	-		GFF2880	0.63	-0.1
2,939,775	-		GFF2880	0.63	-1.0
2,939,775	-		GFF2880	0.63	-2.5
2,939,777	+		GFF2880	0.64	+0.4
2,939,777	+		GFF2880	0.64	-1.1
2,939,780	-		GFF2880	0.64	-0.4
2,939,785	-		GFF2880	0.64	+0.3
2,939,788	+		GFF2880	0.65	-0.7
2,939,788	+		GFF2880	0.65	-0.7
2,939,788	+		GFF2880	0.65	-1.2
2,939,796	-		GFF2880	0.66	-0.1
2,939,796	-		GFF2880	0.66	-0.6
2,939,801	-		GFF2880	0.66	-0.7
2,939,811	+		GFF2880	0.67	-1.3
2,939,811	+		GFF2880	0.67	-0.7
2,939,816	+		GFF2880	0.68	-1.0
2,939,859	-		GFF2880	0.73	-0.2
2,939,864	-		GFF2880	0.73	-0.2
2,939,883	+		GFF2880	0.75	+0.3
2,939,911	+		GFF2880	0.79	-0.5
2,939,911	+		GFF2880	0.79	+1.1
2,939,919	-		GFF2880	0.79	-0.2
2,939,919	-		GFF2880	0.79	-2.0
2,939,939	+		GFF2880	0.82	-1.6
2,939,944	+		GFF2880	0.82	-1.3
2,939,944	+		GFF2880	0.82	-1.5
2,939,947	-		GFF2880	0.83	-0.3
2,939,948	-		GFF2880	0.83	-0.2
2,939,949	+		GFF2880	0.83	+0.3
2,939,949	+		GFF2880	0.83	+1.0
2,939,949	+		GFF2880	0.83	+1.1
2,939,949	+		GFF2880	0.83	+0.3
2,939,952	-		GFF2880	0.83	-1.6
2,939,957	-		GFF2880	0.84	+1.7
2,939,969	-		GFF2880	0.85	-1.7
2,939,969	-		GFF2880	0.85	-0.9
2,939,977	+		GFF2880	0.86	-1.9
2,939,982	+		GFF2880	0.86	-0.4
2,939,995	-		GFF2880	0.88	+1.2
2,939,997	+		GFF2880	0.88	+0.7
2,940,001	-		GFF2880	0.89	-1.0
2,940,005	+		GFF2880	0.89	+1.3
2,940,006	-		GFF2880	0.89	+1.0
2,940,015	+				-0.1
2,940,020	+				-0.3
2,940,020	+				-1.3
2,940,020	+				+0.5
2,940,023	-				-1.0
2,940,028	-				-0.1
2,940,028	-				+0.0
2,940,028	-				-0.6
2,940,073	-				-0.2
2,940,080	+				+0.6
2,940,080	+				-1.1
2,940,088	-				-0.1
2,940,097	+				-0.5
2,940,097	+				-1.3
2,940,097	+				-0.2
2,940,097	+				+1.0
2,940,097	+				-0.1
2,940,097	+				+0.7
2,940,097	+				-1.2
2,940,097	+				-0.3
2,940,097	+				+0.1
2,940,097	+				-1.6
2,940,097	+				+0.5
2,940,097	+				-0.8
2,940,097	+				+0.2
2,940,097	+				+1.0
2,940,097	+				-1.3
2,940,105	-				+0.7
2,940,105	-				+0.3
2,940,105	-				+1.0
2,940,105	-				-1.8
2,940,105	-				-0.8
2,940,105	-				+0.4
2,940,105	-				+0.0
2,940,105	-				-1.7
2,940,105	-				-1.1
2,940,105	-				+0.5
2,940,105	-				-1.7
2,940,105	-				-0.8
2,940,105	-				+0.7
2,940,105	-				-0.8
2,940,105	-				-1.2
2,940,105	-				-1.2
2,940,105	-				-0.8
2,940,105	-				-0.2
2,940,105	-				+0.2
2,940,105	-				+0.2
2,940,127	+				-0.6
2,940,127	+				-0.2
2,940,129	-				-3.1
2,940,135	-				-1.2
2,940,135	-				-1.6
2,940,137	+				-2.2
2,940,145	+				-0.7
2,940,145	+				-1.4
2,940,145	+				+0.8
2,940,145	-				-1.1
2,940,150	+				-0.9
2,940,150	+				-0.3
2,940,150	+				-0.2
2,940,150	+				+0.2
2,940,150	+				+0.5
2,940,153	-				-0.3
2,940,153	-				-0.2
2,940,153	-				+0.5
2,940,155	+				-1.2
2,940,157	+				-0.3
2,940,158	-				-1.3
2,940,158	-				-0.3
2,940,163	-				+0.1
2,940,163	-				-0.8
2,940,163	-				+0.4
2,940,186	+				-2.2
2,940,186	+				+0.1
2,940,186	+				-0.8
2,940,187	+				-0.4
2,940,187	+				-0.9
2,940,187	+				+0.2
2,940,190	-				+0.8
2,940,190	-				-0.6
2,940,190	-				+0.7
2,940,194	-				-2.3
2,940,195	-				-1.8
2,940,195	-				-3.0
2,940,195	-				-0.8
2,940,195	-				-1.0
2,940,200	-				-0.5
2,940,202	+				-0.3
2,940,231	+				-0.7
2,940,239	-				-0.5
2,940,239	-				-1.4
2,940,239	-				+1.0
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