Strain Fitness in Sphingobium sp. HT1-2 around GFF2878

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,935,248	-				-1.3
2,935,262	-				+0.8
2,935,292	-		GFF2877	0.12	-0.9
2,935,326	+		GFF2877	0.15	-0.0
2,935,326	+		GFF2877	0.15	-0.6
2,935,379	-		GFF2877	0.20	-0.2
2,935,391	+		GFF2877	0.21	-0.5
2,935,411	-		GFF2877	0.23	-0.7
2,935,421	-		GFF2877	0.24	-1.0
2,935,436	-		GFF2877	0.25	-1.1
2,935,509	+		GFF2877	0.32	-0.7
2,935,604	+		GFF2877	0.41	-0.8
2,935,604	+		GFF2877	0.41	-1.1
2,935,607	-		GFF2877	0.41	-0.6
2,935,630	+		GFF2877	0.44	-0.2
2,935,638	-		GFF2877	0.44	+0.2
2,935,640	+		GFF2877	0.45	-1.7
2,935,682	+		GFF2877	0.48	-1.0
2,935,701	-		GFF2877	0.50	-0.8
2,935,708	+		GFF2877	0.51	-0.9
2,935,716	-		GFF2877	0.52	-0.6
2,935,760	+		GFF2877	0.56	-1.1
2,935,777	+		GFF2877	0.57	-0.2
2,935,785	-		GFF2877	0.58	+0.6
2,935,807	+		GFF2877	0.60	-0.6
2,935,829	+		GFF2877	0.62	+0.1
2,935,829	+		GFF2877	0.62	-0.6
2,935,837	-		GFF2877	0.63	-1.2
2,935,837	-		GFF2877	0.63	+0.1
2,935,837	-		GFF2877	0.63	-2.0
2,935,839	-		GFF2877	0.63	-1.7
2,935,895	-		GFF2877	0.68	+1.5
2,935,924	-		GFF2877	0.71	+0.1
2,935,952	+		GFF2877	0.74	-1.0
2,936,064	-		GFF2877	0.84	+0.4
2,936,069	+		GFF2877	0.85	-0.2
2,936,069	+		GFF2877	0.85	-0.2
2,936,082	-		GFF2877	0.86	-2.3
2,936,092	-		GFF2877	0.87	+0.1
2,936,103	+		GFF2877	0.88	-1.2
2,936,120	+		GFF2877	0.89	-1.6
2,936,128	-				-1.7
2,936,128	-				-0.3
2,936,128	-				+0.9
2,936,128	-				+1.1
2,936,139	+				+0.4
2,936,139	-				-2.1
2,936,144	+				-3.0
2,936,147	-				+0.1
2,936,147	-				-0.8
2,936,160	+				+1.2
2,936,161	+				+1.2
2,936,195	+				+1.2
2,936,203	-				-0.0
2,936,215	+				-0.8
2,936,215	-				+0.0
2,936,228	+				-1.6
2,936,231	-				-1.2
2,936,237	+				-0.8
2,936,237	+				+0.9
2,936,237	+				-0.3
2,936,243	+				-0.6
2,936,243	+				-0.3
2,936,243	+				-1.2
2,936,243	+				-0.4
2,936,243	+				-1.1
2,936,243	+				-0.8
2,936,251	-				-2.1
2,936,251	-				+0.2
2,936,251	-				+0.8
2,936,251	-				+1.1
2,936,253	+				+0.2
2,936,253	-				+1.2
2,936,261	-				-0.7
2,936,264	+				+0.9
2,936,279	+				+0.1
2,936,291	-				-0.4
2,936,293	+				-1.3
2,936,324	-				+0.6
2,936,334	+				+0.0
2,936,334	+				+0.4
2,936,334	+				+0.5
2,936,342	-				-1.1
2,936,342	-				-0.1
2,936,342	-				-1.3
2,936,356	+		GFF2878	0.10	+1.7
2,936,364	-		GFF2878	0.11	+0.2
2,936,447	-		GFF2878	0.18	+0.2
2,936,453	+		GFF2878	0.19	+0.0
2,936,457	+		GFF2878	0.19	+1.1
2,936,469	+		GFF2878	0.20	-0.5
2,936,471	-		GFF2878	0.20	-0.7
2,936,483	+		GFF2878	0.21	+0.2
2,936,483	+		GFF2878	0.21	-1.2
2,936,512	-		GFF2878	0.24	-0.1
2,936,512	-		GFF2878	0.24	+0.2
2,936,512	-		GFF2878	0.24	-0.5
2,936,512	-		GFF2878	0.24	-0.3
2,936,522	+		GFF2878	0.25	-0.4
2,936,544	-		GFF2878	0.27	-0.1
2,936,544	-		GFF2878	0.27	+1.5
2,936,569	+		GFF2878	0.29	+1.0
2,936,603	+		GFF2878	0.32	-0.8
2,936,611	-		GFF2878	0.33	-0.6
2,936,615	-		GFF2878	0.33	+0.4
2,936,632	-		GFF2878	0.34	-0.8
2,936,645	-		GFF2878	0.36	-1.8
2,936,649	-		GFF2878	0.36	-0.1
2,936,666	-		GFF2878	0.37	+0.2
2,936,692	+		GFF2878	0.40	-0.9
2,936,695	+		GFF2878	0.40	+1.4
2,936,700	-		GFF2878	0.40	-1.3
2,936,700	-		GFF2878	0.40	-0.3
2,936,700	-		GFF2878	0.40	+0.3
2,936,700	-		GFF2878	0.40	+0.8
2,936,700	-		GFF2878	0.40	-1.2
2,936,744	+		GFF2878	0.44	-0.4
2,936,754	+		GFF2878	0.45	-2.1
2,936,754	+		GFF2878	0.45	+1.2
2,936,756	+		GFF2878	0.45	+0.7
2,936,757	-		GFF2878	0.45	-0.5
2,936,769	-		GFF2878	0.46	+0.3
2,936,780	+		GFF2878	0.47	-0.2
2,936,796	+		GFF2878	0.49	-2.2
2,936,798	-		GFF2878	0.49	-0.6
2,936,821	-		GFF2878	0.51	+0.7
2,936,839	+		GFF2878	0.52	-2.1
2,936,847	+		GFF2878	0.53	-2.3
2,936,857	+		GFF2878	0.54	-1.7
2,936,860	-		GFF2878	0.54	+1.5
2,936,866	+		GFF2878	0.55	-0.3
2,936,867	+		GFF2878	0.55	-1.2
2,936,875	-		GFF2878	0.56	+0.2
2,936,882	+		GFF2878	0.56	-0.7
2,936,882	+		GFF2878	0.56	+0.0
2,936,882	+		GFF2878	0.56	-0.0
2,936,882	+		GFF2878	0.56	-0.2
2,936,890	-		GFF2878	0.57	-1.6
2,936,919	+		GFF2878	0.59	-1.2
2,936,919	+		GFF2878	0.59	-0.8
2,936,919	+		GFF2878	0.59	+0.4
2,936,919	+		GFF2878	0.59	-0.9
2,936,927	-		GFF2878	0.60	-0.3
2,936,950	+		GFF2878	0.62	-1.0
2,936,950	+		GFF2878	0.62	+0.8
2,936,950	+		GFF2878	0.62	+0.1
2,936,950	+		GFF2878	0.62	-0.8
2,936,950	+		GFF2878	0.62	+0.8
2,936,950	+		GFF2878	0.62	+0.7
2,936,956	-		GFF2878	0.63	+0.8
2,936,956	-		GFF2878	0.63	-2.6
2,936,958	-		GFF2878	0.63	-0.1
2,936,958	-		GFF2878	0.63	+0.2
2,936,958	-		GFF2878	0.63	-1.3
2,936,958	-		GFF2878	0.63	+0.7
2,936,958	-		GFF2878	0.63	-1.8
2,936,958	-		GFF2878	0.63	+0.1
2,936,998	+		GFF2878	0.66	+0.3
2,937,013	+		GFF2878	0.68	+0.6
2,937,032	+		GFF2878	0.69	+0.8
2,937,034	+		GFF2878	0.70	+0.4
2,937,035	-		GFF2878	0.70	+0.2
2,937,035	-		GFF2878	0.70	-1.0
2,937,035	-		GFF2878	0.70	-2.2
2,937,045	+		GFF2878	0.71	-0.5
2,937,093	+		GFF2878	0.75	+0.6
2,937,130	+		GFF2878	0.78	-1.8
2,937,138	-		GFF2878	0.79	-1.0
2,937,142	+		GFF2878	0.79	+0.7
2,937,166	-		GFF2878	0.81	-0.5
2,937,166	-		GFF2878	0.81	-0.5
2,937,173	+		GFF2878	0.82	+0.3
2,937,176	-		GFF2878	0.82	-0.6
2,937,183	+		GFF2878	0.83	-1.8
2,937,183	+		GFF2878	0.83	-1.8
2,937,191	-		GFF2878	0.83	+1.4
2,937,191	-		GFF2878	0.83	-0.2
2,937,227	+		GFF2878	0.86	+0.1
2,937,257	-		GFF2878	0.89	-0.4
2,937,320	+				-0.3
2,937,320	+				+0.2
2,937,336	+				+0.6
2,937,337	+				-2.4
2,937,338	-				+0.1
2,937,357	-				+0.9
2,937,362	-				+0.8
2,937,409	+				+1.9
2,937,421	+				+0.2
2,937,426	+				-1.3
2,937,444	+				-1.5
2,937,446	+				+0.2
2,937,452	-				-1.1
2,937,452	-				-0.9
2,937,462	-				-0.3
2,937,472	-				+0.2
2,937,472	-				-0.0
2,937,491	-				-0.5
2,937,505	+				-1.2
2,937,505	+				+0.7
2,937,509	+				-0.0
2,937,511	+				+0.4
2,937,538	+				-0.5
2,937,560	+				+0.3
2,937,568	-				+0.9
2,937,568	-				+0.7
2,937,568	-				-1.6
2,937,568	-				+0.6
2,937,570	+				+0.1
2,937,570	+				-0.8
2,937,570	+				-0.9
2,937,578	+				-1.1
2,937,578	+				+0.5
2,937,578	+				+1.0
2,937,578	+				-0.2
2,937,578	-				-0.2
2,937,578	-				-0.7
2,937,578	-				-2.3
2,937,586	-				-0.1
2,937,586	-				-0.6
2,937,586	-				+0.2
2,937,586	-				-1.0
2,937,586	-				+1.0
2,937,598	-				+0.3
2,937,605	-				+1.7
2,937,605	-				+0.6
2,937,613	-				-1.6
2,937,621	+				+0.0
2,937,713	+		GFF2879	0.14	+0.2
2,937,721	-		GFF2879	0.14	+0.5
2,937,741	+		GFF2879	0.16	-0.3
2,937,749	-		GFF2879	0.16	-0.9
2,937,755	+		GFF2879	0.16	-0.1
2,937,778	+		GFF2879	0.18	+1.3
2,937,783	+		GFF2879	0.18	+0.7
2,937,810	-		GFF2879	0.20	-1.6
2,937,835	-		GFF2879	0.22	-0.3
2,937,836	+		GFF2879	0.22	+0.7
2,937,838	+		GFF2879	0.22	-0.7
2,937,838	+		GFF2879	0.22	+0.2
2,937,844	-		GFF2879	0.22	+0.4
2,937,846	-		GFF2879	0.23	+0.7
2,937,872	-		GFF2879	0.24	-1.2
2,937,893	+		GFF2879	0.26	+0.7
2,937,903	+		GFF2879	0.26	-0.5
2,937,911	-		GFF2879	0.27	-1.3
2,937,911	-		GFF2879	0.27	+0.5
2,937,911	-		GFF2879	0.27	+0.6
2,937,911	-		GFF2879	0.27	-0.0
2,937,911	-		GFF2879	0.27	-0.1
2,937,917	+		GFF2879	0.27	+0.4
2,937,922	+		GFF2879	0.28	-0.6
2,937,922	+		GFF2879	0.28	-0.9
2,937,925	-		GFF2879	0.28	-0.3
2,937,927	+		GFF2879	0.28	-1.7
2,937,927	+		GFF2879	0.28	+0.4
2,937,934	+		GFF2879	0.28	-0.8
2,937,934	+		GFF2879	0.28	-0.7
2,937,934	+		GFF2879	0.28	-1.8
2,937,935	-		GFF2879	0.29	-0.4
2,937,935	-		GFF2879	0.29	+0.1
2,937,935	-		GFF2879	0.29	+0.4
2,937,942	+		GFF2879	0.29	+0.5
2,937,942	-		GFF2879	0.29	-0.8
2,937,942	-		GFF2879	0.29	+1.0
2,937,967	-		GFF2879	0.31	+0.7
2,937,969	+		GFF2879	0.31	-0.7
2,937,977	-		GFF2879	0.31	-1.0
2,937,993	+		GFF2879	0.32	-1.3
2,937,996	+		GFF2879	0.33	+0.8
2,937,999	-		GFF2879	0.33	-0.4
2,938,021	+		GFF2879	0.34	-0.2
2,938,038	-		GFF2879	0.35	-0.1
2,938,161	-		GFF2879	0.44	-1.0
2,938,163	+		GFF2879	0.44	-1.8
2,938,163	+		GFF2879	0.44	+1.2
2,938,168	-		GFF2879	0.44	-1.1
2,938,183	+		GFF2879	0.45	+1.1
2,938,191	-		GFF2879	0.46	+0.6
2,938,206	-		GFF2879	0.47	-1.3
2,938,210	-		GFF2879	0.47	-1.4
2,938,215	-		GFF2879	0.47	+0.2
2,938,226	-		GFF2879	0.48	+2.0
2,938,298	-		GFF2879	0.53	+0.5
2,938,298	-		GFF2879	0.53	-0.8
2,938,303	+		GFF2879	0.53	+0.1
2,938,303	+		GFF2879	0.53	-0.1
2,938,311	-		GFF2879	0.54	+0.1
2,938,366	+		GFF2879	0.57	-0.1
2,938,374	-		GFF2879	0.58	-0.2
2,938,374	-		GFF2879	0.58	-1.6
2,938,374	-		GFF2879	0.58	-1.4
2,938,374	-		GFF2879	0.58	-0.4