Strain Fitness in Sphingobium sp. HT1-2 around GFF2877

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,934,167	+				-1.1
2,934,167	+				-0.1
2,934,167	+				+0.3
2,934,169	+				-0.4
2,934,175	-				-2.8
2,934,182	+				+0.4
2,934,185	-				-0.2
2,934,195	-				+0.2
2,934,221	+				-0.1
2,934,231	+				-0.3
2,934,236	+				+0.5
2,934,236	+				+0.5
2,934,236	+				-0.5
2,934,243	+				-1.2
2,934,243	+				+0.8
2,934,313	+				+0.9
2,934,313	+				+0.3
2,934,313	+				-1.5
2,934,313	+				-1.7
2,934,313	+				-1.2
2,934,313	+				-1.0
2,934,313	+				+0.4
2,934,321	-				-0.1
2,934,321	-				-0.8
2,934,321	-				-0.5
2,934,321	-				+0.2
2,934,321	-				-1.1
2,934,321	-				-1.3
2,934,321	-				-0.8
2,934,321	-				+0.5
2,934,323	+				-0.8
2,934,328	+				-1.5
2,934,331	-				-1.9
2,934,354	+		GFF2876	0.11	+0.2
2,934,407	-		GFF2876	0.17	+0.8
2,934,414	+		GFF2876	0.18	+0.7
2,934,480	-		GFF2876	0.26	-0.3
2,934,485	+		GFF2876	0.26	-1.6
2,934,502	+		GFF2876	0.28	-1.7
2,934,507	+		GFF2876	0.29	+0.4
2,934,507	+		GFF2876	0.29	+0.3
2,934,507	+		GFF2876	0.29	-0.2
2,934,507	+		GFF2876	0.29	-1.2
2,934,507	+		GFF2876	0.29	+0.4
2,934,507	+		GFF2876	0.29	-1.2
2,934,507	+		GFF2876	0.29	+0.5
2,934,507	+		GFF2876	0.29	+0.1
2,934,510	-		GFF2876	0.29	-0.1
2,934,515	-		GFF2876	0.30	-0.5
2,934,515	-		GFF2876	0.30	-0.1
2,934,515	-		GFF2876	0.30	-0.2
2,934,515	-		GFF2876	0.30	-1.3
2,934,515	-		GFF2876	0.30	+0.0
2,934,515	-		GFF2876	0.30	-0.2
2,934,515	-		GFF2876	0.30	-1.6
2,934,515	-		GFF2876	0.30	+0.3
2,934,543	+		GFF2876	0.33	+0.2
2,934,543	+		GFF2876	0.33	-1.2
2,934,543	+		GFF2876	0.33	+0.0
2,934,576	+		GFF2876	0.36	-2.4
2,934,576	+		GFF2876	0.36	-0.8
2,934,584	-		GFF2876	0.37	+0.3
2,934,592	+		GFF2876	0.38	-2.2
2,934,612	-		GFF2876	0.41	-1.8
2,934,622	-		GFF2876	0.42	-0.4
2,934,633	-		GFF2876	0.43	+0.4
2,934,644	+		GFF2876	0.44	-0.4
2,934,644	+		GFF2876	0.44	+0.2
2,934,644	+		GFF2876	0.44	-1.8
2,934,652	-		GFF2876	0.45	-1.7
2,934,669	+		GFF2876	0.47	-0.3
2,934,677	-		GFF2876	0.48	+1.0
2,934,683	-		GFF2876	0.49	-1.6
2,934,684	-		GFF2876	0.49	-0.6
2,934,686	-		GFF2876	0.49	+0.5
2,934,709	-		GFF2876	0.51	-0.6
2,934,711	+		GFF2876	0.52	+0.7
2,934,719	-		GFF2876	0.53	-0.8
2,934,725	-		GFF2876	0.53	-1.9
2,934,726	-		GFF2876	0.53	+0.0
2,934,744	+		GFF2876	0.55	+0.2
2,934,744	+		GFF2876	0.55	+0.1
2,934,744	+		GFF2876	0.55	-0.7
2,934,745	-		GFF2876	0.56	-1.2
2,934,752	-		GFF2876	0.56	+0.4
2,934,758	-		GFF2876	0.57	-1.0
2,934,785	-		GFF2876	0.60	-0.0
2,934,796	+		GFF2876	0.61	-0.5
2,934,796	+		GFF2876	0.61	-0.9
2,934,796	+		GFF2876	0.61	+0.1
2,934,804	-		GFF2876	0.62	-0.4
2,934,804	-		GFF2876	0.62	-1.9
2,934,808	-		GFF2876	0.63	-2.9
2,934,848	-		GFF2876	0.67	-1.2
2,934,865	-		GFF2876	0.69	-0.6
2,934,948	+		GFF2876	0.78	+0.1
2,934,964	-		GFF2876	0.80	-0.3
2,934,968	-		GFF2876	0.81	-2.6
2,934,970	+		GFF2876	0.81	-1.7
2,934,970	+		GFF2876	0.81	-0.5
2,935,021	+		GFF2876	0.87	+0.0
2,935,024	-		GFF2876	0.87	+0.4
2,935,034	-		GFF2876	0.88	-0.6
2,935,034	-		GFF2876	0.88	-0.1
2,935,036	+		GFF2876	0.88	-0.1
2,935,036	+		GFF2876	0.88	-0.2
2,935,036	+		GFF2876	0.88	+0.7
2,935,036	+		GFF2876	0.88	-0.6
2,935,036	+		GFF2876	0.88	-1.0
2,935,036	+		GFF2876	0.88	-0.2
2,935,036	+		GFF2876	0.88	-2.5
2,935,036	+		GFF2876	0.88	+0.5
2,935,036	+		GFF2876	0.88	-0.1
2,935,036	+		GFF2876	0.88	+1.1
2,935,036	+		GFF2876	0.88	-2.2
2,935,036	+		GFF2876	0.88	-0.1
2,935,039	-		GFF2876	0.89	-1.3
2,935,044	-		GFF2876	0.89	+0.2
2,935,044	-		GFF2876	0.89	-1.0
2,935,044	-		GFF2876	0.89	-0.1
2,935,044	-		GFF2876	0.89	-1.3
2,935,044	-		GFF2876	0.89	-0.0
2,935,044	-		GFF2876	0.89	-2.2
2,935,044	-		GFF2876	0.89	+0.7
2,935,044	-		GFF2876	0.89	+0.6
2,935,044	-		GFF2876	0.89	-0.5
2,935,046	+		GFF2876	0.89	+0.2
2,935,046	+		GFF2876	0.89	+0.1
2,935,053	+				-1.5
2,935,054	-				+0.8
2,935,054	-				+0.7
2,935,054	-				-0.6
2,935,054	-				-0.4
2,935,055	+				-1.6
2,935,055	-				-0.0
2,935,061	+				-0.1
2,935,072	+				-1.3
2,935,080	-				+0.2
2,935,080	-				+0.5
2,935,081	+				-0.5
2,935,118	-				-1.3
2,935,124	+				+1.5
2,935,132	-				+1.0
2,935,134	+				+0.5
2,935,139	+				+0.2
2,935,139	+				+0.5
2,935,142	-				+0.5
2,935,142	-				+0.4
2,935,147	-				-0.3
2,935,147	-				-0.3
2,935,147	-				-0.3
2,935,166	+				-0.5
2,935,166	+				-0.5
2,935,174	-				-0.9
2,935,179	+				-1.3
2,935,194	+				-1.0
2,935,196	-				+0.1
2,935,197	-				-1.5
2,935,197	-				-0.9
2,935,197	-				+0.5
2,935,202	-				-0.4
2,935,206	+				-0.3
2,935,206	+				-0.2
2,935,214	-				-0.5
2,935,214	-				-2.5
2,935,214	-				+0.0
2,935,218	+				-1.3
2,935,248	-				-1.3
2,935,262	-				+0.8
2,935,292	-		GFF2877	0.12	-0.9
2,935,326	+		GFF2877	0.15	-0.0
2,935,326	+		GFF2877	0.15	-0.6
2,935,379	-		GFF2877	0.20	-0.2
2,935,391	+		GFF2877	0.21	-0.5
2,935,411	-		GFF2877	0.23	-0.7
2,935,421	-		GFF2877	0.24	-1.0
2,935,436	-		GFF2877	0.25	-1.1
2,935,509	+		GFF2877	0.32	-0.7
2,935,604	+		GFF2877	0.41	-0.8
2,935,604	+		GFF2877	0.41	-1.1
2,935,607	-		GFF2877	0.41	-0.6
2,935,630	+		GFF2877	0.44	-0.2
2,935,638	-		GFF2877	0.44	+0.2
2,935,640	+		GFF2877	0.45	-1.7
2,935,682	+		GFF2877	0.48	-1.0
2,935,701	-		GFF2877	0.50	-0.8
2,935,708	+		GFF2877	0.51	-0.9
2,935,716	-		GFF2877	0.52	-0.6
2,935,760	+		GFF2877	0.56	-1.1
2,935,777	+		GFF2877	0.57	-0.2
2,935,785	-		GFF2877	0.58	+0.6
2,935,807	+		GFF2877	0.60	-0.6
2,935,829	+		GFF2877	0.62	+0.1
2,935,829	+		GFF2877	0.62	-0.6
2,935,837	-		GFF2877	0.63	-1.2
2,935,837	-		GFF2877	0.63	+0.1
2,935,837	-		GFF2877	0.63	-2.0
2,935,839	-		GFF2877	0.63	-1.7
2,935,895	-		GFF2877	0.68	+1.5
2,935,924	-		GFF2877	0.71	+0.1
2,935,952	+		GFF2877	0.74	-1.0
2,936,064	-		GFF2877	0.84	+0.4
2,936,069	+		GFF2877	0.85	-0.2
2,936,069	+		GFF2877	0.85	-0.2
2,936,082	-		GFF2877	0.86	-2.3
2,936,092	-		GFF2877	0.87	+0.1
2,936,103	+		GFF2877	0.88	-1.2
2,936,120	+		GFF2877	0.89	-1.6
2,936,128	-				-1.7
2,936,128	-				-0.3
2,936,128	-				+0.9
2,936,128	-				+1.1
2,936,139	+				+0.4
2,936,139	-				-2.1
2,936,144	+				-3.0
2,936,147	-				+0.1
2,936,147	-				-0.8
2,936,160	+				+1.2
2,936,161	+				+1.2
2,936,195	+				+1.2
2,936,203	-				-0.0
2,936,215	+				-0.8
2,936,215	-				+0.0
2,936,228	+				-1.6
2,936,231	-				-1.2
2,936,237	+				-0.8
2,936,237	+				+0.9
2,936,237	+				-0.3
2,936,243	+				-0.6
2,936,243	+				-0.3
2,936,243	+				-1.2
2,936,243	+				-0.4
2,936,243	+				-1.1
2,936,243	+				-0.8
2,936,251	-				-2.1
2,936,251	-				+0.2
2,936,251	-				+0.8
2,936,251	-				+1.1
2,936,253	+				+0.2
2,936,253	-				+1.2
2,936,261	-				-0.7
2,936,264	+				+0.9
2,936,279	+				+0.1
2,936,291	-				-0.4
2,936,293	+				-1.3
2,936,324	-				+0.6
2,936,334	+				+0.0
2,936,334	+				+0.4
2,936,334	+				+0.5
2,936,342	-				-1.1
2,936,342	-				-0.1
2,936,342	-				-1.3
2,936,356	+		GFF2878	0.10	+1.7
2,936,364	-		GFF2878	0.11	+0.2
2,936,447	-		GFF2878	0.18	+0.2
2,936,453	+		GFF2878	0.19	+0.0
2,936,457	+		GFF2878	0.19	+1.1
2,936,469	+		GFF2878	0.20	-0.5
2,936,471	-		GFF2878	0.20	-0.7
2,936,483	+		GFF2878	0.21	+0.2
2,936,483	+		GFF2878	0.21	-1.2
2,936,512	-		GFF2878	0.24	-0.1
2,936,512	-		GFF2878	0.24	+0.2
2,936,512	-		GFF2878	0.24	-0.5
2,936,512	-		GFF2878	0.24	-0.3
2,936,522	+		GFF2878	0.25	-0.4
2,936,544	-		GFF2878	0.27	-0.1
2,936,544	-		GFF2878	0.27	+1.5
2,936,569	+		GFF2878	0.29	+1.0
2,936,603	+		GFF2878	0.32	-0.8
2,936,611	-		GFF2878	0.33	-0.6
2,936,615	-		GFF2878	0.33	+0.4
2,936,632	-		GFF2878	0.34	-0.8
2,936,645	-		GFF2878	0.36	-1.8
2,936,649	-		GFF2878	0.36	-0.1
2,936,666	-		GFF2878	0.37	+0.2
2,936,692	+		GFF2878	0.40	-0.9
2,936,695	+		GFF2878	0.40	+1.4
2,936,700	-		GFF2878	0.40	-1.3
2,936,700	-		GFF2878	0.40	-0.3
2,936,700	-		GFF2878	0.40	+0.3
2,936,700	-		GFF2878	0.40	+0.8
2,936,700	-		GFF2878	0.40	-1.2
2,936,744	+		GFF2878	0.44	-0.4
2,936,754	+		GFF2878	0.45	-2.1
2,936,754	+		GFF2878	0.45	+1.2
2,936,756	+		GFF2878	0.45	+0.7
2,936,757	-		GFF2878	0.45	-0.5
2,936,769	-		GFF2878	0.46	+0.3
2,936,780	+		GFF2878	0.47	-0.2
2,936,796	+		GFF2878	0.49	-2.2
2,936,798	-		GFF2878	0.49	-0.6
2,936,821	-		GFF2878	0.51	+0.7
2,936,839	+		GFF2878	0.52	-2.1
2,936,847	+		GFF2878	0.53	-2.3
2,936,857	+		GFF2878	0.54	-1.7
2,936,860	-		GFF2878	0.54	+1.5
2,936,866	+		GFF2878	0.55	-0.3
2,936,867	+		GFF2878	0.55	-1.2
2,936,875	-		GFF2878	0.56	+0.2
2,936,882	+		GFF2878	0.56	-0.7
2,936,882	+		GFF2878	0.56	+0.0
2,936,882	+		GFF2878	0.56	-0.0
2,936,882	+		GFF2878	0.56	-0.2
2,936,890	-		GFF2878	0.57	-1.6
2,936,919	+		GFF2878	0.59	-1.2
2,936,919	+		GFF2878	0.59	-0.8
2,936,919	+		GFF2878	0.59	+0.4
2,936,919	+		GFF2878	0.59	-0.9
2,936,927	-		GFF2878	0.60	-0.3
2,936,950	+		GFF2878	0.62	-1.0
2,936,950	+		GFF2878	0.62	+0.8
2,936,950	+		GFF2878	0.62	+0.1
2,936,950	+		GFF2878	0.62	-0.8
2,936,950	+		GFF2878	0.62	+0.8
2,936,950	+		GFF2878	0.62	+0.7
2,936,956	-		GFF2878	0.63	+0.8
2,936,956	-		GFF2878	0.63	-2.6
2,936,958	-		GFF2878	0.63	-0.1
2,936,958	-		GFF2878	0.63	+0.2
2,936,958	-		GFF2878	0.63	-1.3
2,936,958	-		GFF2878	0.63	+0.7
2,936,958	-		GFF2878	0.63	-1.8
2,936,958	-		GFF2878	0.63	+0.1
2,936,998	+		GFF2878	0.66	+0.3
2,937,013	+		GFF2878	0.68	+0.6
2,937,032	+		GFF2878	0.69	+0.8
2,937,034	+		GFF2878	0.70	+0.4
2,937,035	-		GFF2878	0.70	+0.2
2,937,035	-		GFF2878	0.70	-1.0
2,937,035	-		GFF2878	0.70	-2.2
2,937,045	+		GFF2878	0.71	-0.5
2,937,093	+		GFF2878	0.75	+0.6
2,937,130	+		GFF2878	0.78	-1.8
2,937,138	-		GFF2878	0.79	-1.0
2,937,142	+		GFF2878	0.79	+0.7
2,937,166	-		GFF2878	0.81	-0.5
2,937,166	-		GFF2878	0.81	-0.5
2,937,173	+		GFF2878	0.82	+0.3
2,937,176	-		GFF2878	0.82	-0.6
2,937,183	+		GFF2878	0.83	-1.8
2,937,183	+		GFF2878	0.83	-1.8
2,937,191	-		GFF2878	0.83	+1.4
2,937,191	-		GFF2878	0.83	-0.2
2,937,227	+		GFF2878	0.86	+0.1