Strain Fitness in Sphingobium sp. HT1-2 around GFF2874

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,930,502	+				+0.1
2,930,515	-				+0.5
2,930,515	-				+0.8
2,930,527	+				-0.4
2,930,566	+		GFF2873	0.14	+0.3
2,930,614	+		GFF2873	0.19	-0.3
2,930,614	+		GFF2873	0.19	+0.3
2,930,622	-		GFF2873	0.20	+1.6
2,930,638	+		GFF2873	0.22	+0.8
2,930,638	+		GFF2873	0.22	-1.7
2,930,638	+		GFF2873	0.22	-0.4
2,930,638	+		GFF2873	0.22	-1.6
2,930,638	+		GFF2873	0.22	+0.8
2,930,646	-		GFF2873	0.23	+0.1
2,930,646	-		GFF2873	0.23	-0.4
2,930,646	-		GFF2873	0.23	+0.1
2,930,678	-		GFF2873	0.26	-1.6
2,930,696	+		GFF2873	0.28	-0.9
2,930,704	-		GFF2873	0.29	+0.3
2,930,719	-		GFF2873	0.31	-0.5
2,930,851	+		GFF2873	0.46	-0.0
2,930,872	-		GFF2873	0.48	-0.4
2,930,991	-		GFF2873	0.61	-0.5
2,931,001	-		GFF2873	0.62	+0.1
2,931,056	+		GFF2873	0.69	-0.3
2,931,081	+		GFF2873	0.72	+0.2
2,931,086	+		GFF2873	0.72	+1.0
2,931,145	+		GFF2873	0.79	-0.1
2,931,153	-		GFF2873	0.80	-0.9
2,931,160	+		GFF2873	0.80	+0.1
2,931,181	+		GFF2873	0.83	+1.9
2,931,185	-		GFF2873	0.83	-0.5
2,931,185	-		GFF2873	0.83	+0.5
2,931,195	-		GFF2873	0.84	+0.9
2,931,204	-		GFF2873	0.85	-0.7
2,931,242	+		GFF2873	0.90	-0.6
2,931,245	-				-1.2
2,931,245	-				+0.6
2,931,250	-				-1.3
2,931,250	-				+0.2
2,931,317	-				-0.1
2,931,320	-				+1.0
2,931,364	-				+0.3
2,931,364	-				-0.9
2,931,364	-				-0.0
2,931,481	+				-0.3
2,931,485	-				+0.4
2,931,515	+				-0.6
2,931,515	+				+0.1
2,931,520	+				+0.4
2,931,534	+				+0.1
2,931,559	-				-1.1
2,931,579	-				+0.9
2,931,580	+				+1.2
2,931,589	+				-0.2
2,931,589	+				+1.6
2,931,597	-				-0.5
2,931,607	-				+0.1
2,931,638	+				-0.1
2,931,641	-				+0.2
2,931,646	-				+0.3
2,931,648	+				+0.2
2,931,652	+				+0.3
2,931,656	-				+1.4
2,931,665	-				+1.4
2,931,666	+				+0.8
2,931,673	+				-0.8
2,931,673	-				+0.3
2,931,675	+				-0.3
2,931,683	-				+0.5
2,931,727	+		GFF2874	0.11	-0.6
2,931,750	+		GFF2874	0.13	-0.8
2,931,750	+		GFF2874	0.13	-1.2
2,931,758	-		GFF2874	0.13	-0.9
2,931,758	-		GFF2874	0.13	-0.0
2,931,758	-		GFF2874	0.13	+0.1
2,931,767	+		GFF2874	0.13	-0.4
2,931,785	+		GFF2874	0.14	+1.0
2,931,785	+		GFF2874	0.14	+0.2
2,931,785	+		GFF2874	0.14	+0.1
2,931,785	+		GFF2874	0.14	-0.6
2,931,793	-		GFF2874	0.15	+0.2
2,931,793	-		GFF2874	0.15	-1.2
2,931,793	-		GFF2874	0.15	+0.8
2,931,793	-		GFF2874	0.15	+0.1
2,931,808	+		GFF2874	0.15	-0.4
2,931,808	-		GFF2874	0.15	-1.1
2,931,811	+		GFF2874	0.16	+0.1
2,931,824	-		GFF2874	0.16	-0.2
2,931,848	+		GFF2874	0.17	+1.5
2,931,853	-		GFF2874	0.18	+0.6
2,931,863	+		GFF2874	0.18	+0.2
2,931,881	-		GFF2874	0.19	+0.1
2,931,890	+		GFF2874	0.19	-0.6
2,931,924	-		GFF2874	0.21	+0.4
2,931,926	+		GFF2874	0.21	+0.4
2,931,926	+		GFF2874	0.21	+0.1
2,932,001	-		GFF2874	0.25	+0.2
2,932,003	+		GFF2874	0.25	+1.0
2,932,033	-		GFF2874	0.26	+0.1
2,932,054	+		GFF2874	0.27	-0.9
2,932,064	+		GFF2874	0.28	+1.1
2,932,104	+		GFF2874	0.30	+1.1
2,932,112	-		GFF2874	0.30	-0.1
2,932,131	-		GFF2874	0.31	-0.1
2,932,140	+		GFF2874	0.31	-0.7
2,932,147	+		GFF2874	0.32	-0.2
2,932,155	-		GFF2874	0.32	-0.7
2,932,176	-		GFF2874	0.33	-0.9
2,932,186	+		GFF2874	0.34	+0.3
2,932,202	+		GFF2874	0.34	-0.0
2,932,204	-		GFF2874	0.34	-1.4
2,932,217	-		GFF2874	0.35	-1.4
2,932,217	-		GFF2874	0.35	+0.2
2,932,217	-		GFF2874	0.35	+0.5
2,932,263	+		GFF2874	0.37	-0.8
2,932,265	+		GFF2874	0.37	+0.5
2,932,271	-		GFF2874	0.38	-0.0
2,932,277	-		GFF2874	0.38	-1.3
2,932,320	+		GFF2874	0.40	-1.2
2,932,347	+		GFF2874	0.41	+0.8
2,932,347	+		GFF2874	0.41	-0.8
2,932,350	-		GFF2874	0.42	-1.8
2,932,355	-		GFF2874	0.42	+0.6
2,932,364	+		GFF2874	0.42	-2.0
2,932,368	+		GFF2874	0.42	+0.2
2,932,382	+		GFF2874	0.43	-0.3
2,932,382	+		GFF2874	0.43	-0.2
2,932,390	-		GFF2874	0.43	-1.7
2,932,394	+		GFF2874	0.44	+0.8
2,932,394	+		GFF2874	0.44	+0.4
2,932,394	+		GFF2874	0.44	+1.3
2,932,402	-		GFF2874	0.44	-0.0
2,932,402	-		GFF2874	0.44	+0.7
2,932,449	+		GFF2874	0.46	-0.0
2,932,451	+		GFF2874	0.46	+0.1
2,932,482	+		GFF2874	0.48	-0.6
2,932,482	+		GFF2874	0.48	+0.4
2,932,488	-		GFF2874	0.48	-1.3
2,932,495	-		GFF2874	0.49	+0.1
2,932,502	+		GFF2874	0.49	-1.4
2,932,641	+		GFF2874	0.56	+1.2
2,932,649	-		GFF2874	0.56	+0.2
2,932,661	+		GFF2874	0.57	-0.1
2,932,661	+		GFF2874	0.57	-0.4
2,932,669	-		GFF2874	0.57	-0.2
2,932,669	-		GFF2874	0.57	+1.0
2,932,742	+		GFF2874	0.60	+1.4
2,932,750	-		GFF2874	0.61	-0.2
2,932,757	+		GFF2874	0.61	-0.6
2,932,765	+		GFF2874	0.62	-0.4
2,932,779	-		GFF2874	0.62	-0.6
2,932,794	+		GFF2874	0.63	+0.8
2,932,802	-		GFF2874	0.63	+1.4
2,932,802	-		GFF2874	0.63	+0.3
2,932,833	-		GFF2874	0.65	+0.3
2,932,866	-		GFF2874	0.66	+0.8
2,932,884	-		GFF2874	0.67	-0.8
2,932,978	+		GFF2874	0.72	-0.9
2,932,993	+		GFF2874	0.73	-1.9
2,933,052	+		GFF2874	0.75	-0.8
2,933,057	+		GFF2874	0.76	+0.2
2,933,065	-		GFF2874	0.76	-0.6
2,933,067	+		GFF2874	0.76	+0.7
2,933,114	+		GFF2874	0.78	-1.2
2,933,114	+		GFF2874	0.78	+1.5
2,933,121	+		GFF2874	0.79	-0.9
2,933,122	-		GFF2874	0.79	-0.6
2,933,133	+		GFF2874	0.79	+1.8
2,933,133	+		GFF2874	0.79	+0.2
2,933,141	-		GFF2874	0.80	+0.7
2,933,141	-		GFF2874	0.80	-2.6
2,933,141	-		GFF2874	0.80	+1.1
2,933,146	-		GFF2874	0.80	+0.3
2,933,165	+		GFF2874	0.81	+0.2
2,933,165	+		GFF2874	0.81	-1.2
2,933,165	+		GFF2874	0.81	+1.8
2,933,173	-		GFF2874	0.81	-1.9
2,933,173	-		GFF2874	0.81	+0.5
2,933,173	-		GFF2874	0.81	+0.8
2,933,173	-		GFF2874	0.81	-2.0
2,933,173	-		GFF2874	0.81	+0.0
2,933,183	+		GFF2874	0.82	+1.0
2,933,191	-		GFF2874	0.82	-1.1
2,933,218	-		GFF2874	0.83	-1.0
2,933,238	-		GFF2874	0.84	+0.1
2,933,246	+		GFF2874	0.85	-0.5
2,933,256	+		GFF2874	0.85	-0.2
2,933,271	+		GFF2874	0.86	+0.6
2,933,279	-		GFF2874	0.86	-0.5
2,933,284	-		GFF2874	0.87	+0.3
2,933,289	-		GFF2874	0.87	-0.4
2,933,289	-		GFF2874	0.87	-0.8
2,933,296	-		GFF2874	0.87	+1.1
2,933,335	+		GFF2874	0.89	+0.1
2,933,353	+				-1.4
2,933,361	-				+0.1
2,933,380	-				-1.5
2,933,438	-				-0.2
2,933,439	-				+1.4
2,933,439	-				+0.7
2,933,466	-				+0.5
2,933,592	-				-0.9
2,933,631	+				+0.5
2,933,638	+		GFF2875	0.10	+1.1
2,933,787	-		GFF2875	0.34	+0.2
2,933,816	+		GFF2875	0.38	-0.7
2,933,839	-		GFF2875	0.42	-0.1
2,933,880	-		GFF2875	0.48	-0.5
2,933,967	+		GFF2875	0.62	-0.9
2,933,967	+		GFF2875	0.62	+0.9
2,933,975	-		GFF2875	0.64	-0.0
2,933,977	+		GFF2875	0.64	-0.3
2,933,977	+		GFF2875	0.64	+1.2
2,934,003	+		GFF2875	0.68	-1.6
2,934,059	+		GFF2875	0.77	-0.7
2,934,066	-		GFF2875	0.78	-0.6
2,934,067	-		GFF2875	0.78	+1.4
2,934,067	-		GFF2875	0.78	-0.5
2,934,099	+		GFF2875	0.83	-0.2
2,934,099	+		GFF2875	0.83	+0.3
2,934,107	-		GFF2875	0.84	-0.8
2,934,107	-		GFF2875	0.84	+0.2
2,934,135	+		GFF2875	0.89	+0.1
2,934,158	-				-0.6
2,934,236	+				-0.4
2,934,243	+				-1.1
2,934,313	+				+0.6
2,934,313	+				-1.5
2,934,313	+				-1.1
2,934,502	+		GFF2876	0.28	-1.5
2,934,507	+		GFF2876	0.29	+0.2
2,934,515	-		GFF2876	0.30	+0.2