Strain Fitness in Sphingobium sp. HT1-2 around GFF2873

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,929,454	-				-1.2
2,929,473	-				-0.3
2,929,502	-		GFF2872	0.11	-0.3
2,929,518	+		GFF2872	0.12	+0.3
2,929,522	-		GFF2872	0.13	-0.0
2,929,536	-		GFF2872	0.14	-0.7
2,929,551	+		GFF2872	0.16	-0.8
2,929,554	-		GFF2872	0.16	-0.3
2,929,564	+		GFF2872	0.17	-0.1
2,929,572	-		GFF2872	0.18	-0.2
2,929,573	+		GFF2872	0.18	-0.5
2,929,590	-		GFF2872	0.19	-0.7
2,929,618	-		GFF2872	0.22	-0.6
2,929,622	+		GFF2872	0.22	-0.2
2,929,636	-		GFF2872	0.24	-0.5
2,929,641	-		GFF2872	0.24	+0.5
2,929,654	+		GFF2872	0.25	-0.5
2,929,682	+		GFF2872	0.28	-1.1
2,929,682	+		GFF2872	0.28	+0.2
2,929,704	+		GFF2872	0.30	+0.6
2,929,721	-		GFF2872	0.32	-0.5
2,929,735	+		GFF2872	0.33	+1.8
2,929,743	-		GFF2872	0.34	-2.0
2,929,770	+		GFF2872	0.36	-0.3
2,929,788	-		GFF2872	0.38	-0.7
2,929,796	+		GFF2872	0.39	+1.1
2,929,798	+		GFF2872	0.39	+1.2
2,929,798	+		GFF2872	0.39	-0.5
2,929,804	-		GFF2872	0.39	-0.4
2,929,819	-		GFF2872	0.41	+0.2
2,929,819	-		GFF2872	0.41	-0.9
2,929,832	-		GFF2872	0.42	-2.1
2,929,840	+		GFF2872	0.43	-0.6
2,929,848	-		GFF2872	0.43	+0.2
2,929,858	-		GFF2872	0.44	-1.5
2,929,860	+		GFF2872	0.45	+0.8
2,929,882	-		GFF2872	0.47	+0.8
2,929,883	-		GFF2872	0.47	-2.0
2,929,918	+		GFF2872	0.50	-0.4
2,929,924	-		GFF2872	0.51	-2.1
2,929,945	+		GFF2872	0.53	+0.1
2,929,945	+		GFF2872	0.53	-1.2
2,929,945	+		GFF2872	0.53	-0.2
2,929,945	+		GFF2872	0.53	-0.2
2,929,953	-		GFF2872	0.53	-1.1
2,929,953	-		GFF2872	0.53	+1.2
2,929,953	-		GFF2872	0.53	+1.2
2,929,953	-		GFF2872	0.53	-1.8
2,929,953	-		GFF2872	0.53	+0.1
2,929,953	-		GFF2872	0.53	-0.4
2,929,967	-		GFF2872	0.55	+0.2
2,929,979	+		GFF2872	0.56	-1.6
2,929,979	+		GFF2872	0.56	+0.2
2,929,979	+		GFF2872	0.56	+0.5
2,929,979	+		GFF2872	0.56	-0.5
2,929,987	-		GFF2872	0.57	+0.2
2,929,987	-		GFF2872	0.57	-0.8
2,929,987	-		GFF2872	0.57	+0.2
2,929,987	-		GFF2872	0.57	+0.7
2,929,987	-		GFF2872	0.57	-0.4
2,929,987	-		GFF2872	0.57	-1.5
2,929,987	-		GFF2872	0.57	-1.7
2,929,987	-		GFF2872	0.57	-1.0
2,929,987	-		GFF2872	0.57	+0.8
2,929,987	-		GFF2872	0.57	-2.3
2,930,025	+		GFF2872	0.60	-0.6
2,930,033	-		GFF2872	0.61	-1.3
2,930,033	-		GFF2872	0.61	-2.1
2,930,047	+		GFF2872	0.62	-1.2
2,930,047	+		GFF2872	0.62	-1.1
2,930,047	+		GFF2872	0.62	-0.6
2,930,047	+		GFF2872	0.62	+0.4
2,930,047	+		GFF2872	0.62	+0.9
2,930,047	+		GFF2872	0.62	+0.7
2,930,047	+		GFF2872	0.62	+0.1
2,930,047	+		GFF2872	0.62	-2.6
2,930,047	+		GFF2872	0.62	-0.2
2,930,055	-		GFF2872	0.63	+0.0
2,930,055	-		GFF2872	0.63	-1.1
2,930,055	-		GFF2872	0.63	-0.6
2,930,055	-		GFF2872	0.63	-0.3
2,930,055	-		GFF2872	0.63	-0.3
2,930,055	-		GFF2872	0.63	-0.3
2,930,082	-		GFF2872	0.65	+0.0
2,930,107	+		GFF2872	0.68	-0.6
2,930,113	-		GFF2872	0.68	-0.7
2,930,114	-		GFF2872	0.68	-1.6
2,930,119	-		GFF2872	0.69	-1.1
2,930,140	+		GFF2872	0.71	-0.8
2,930,181	+		GFF2872	0.75	+0.5
2,930,189	-		GFF2872	0.75	-2.7
2,930,196	+		GFF2872	0.76	+0.7
2,930,204	-		GFF2872	0.77	-0.9
2,930,233	+		GFF2872	0.80	-0.1
2,930,252	+		GFF2872	0.81	-0.5
2,930,264	-		GFF2872	0.83	+0.1
2,930,264	-		GFF2872	0.83	-1.3
2,930,379	-				-1.0
2,930,379	-				-0.6
2,930,384	-				+1.0
2,930,384	-				-1.6
2,930,387	+				+0.8
2,930,389	+				-0.8
2,930,395	-				-0.8
2,930,395	-				-0.5
2,930,397	-				+0.6
2,930,397	-				+0.8
2,930,397	-				+0.5
2,930,402	+				-0.3
2,930,402	+				+0.3
2,930,404	+				+0.4
2,930,412	-				+0.6
2,930,412	-				-1.2
2,930,412	-				+0.7
2,930,412	-				-0.5
2,930,421	+				+1.2
2,930,429	-				+0.2
2,930,429	-				+0.0
2,930,453	+				-0.8
2,930,461	-				-0.2
2,930,500	-				+0.3
2,930,515	-				+0.4
2,930,520	-				+0.2
2,930,527	+				-0.6
2,930,547	+		GFF2873	0.11	-1.2
2,930,555	-		GFF2873	0.12	-1.7
2,930,563	+		GFF2873	0.13	+1.1
2,930,566	+		GFF2873	0.14	+0.2
2,930,614	+		GFF2873	0.19	-0.5
2,930,614	+		GFF2873	0.19	+0.1
2,930,622	-		GFF2873	0.20	+1.5
2,930,622	-		GFF2873	0.20	-0.5
2,930,638	+		GFF2873	0.22	+0.7
2,930,638	+		GFF2873	0.22	-1.8
2,930,638	+		GFF2873	0.22	-0.6
2,930,638	+		GFF2873	0.22	+0.7
2,930,638	+		GFF2873	0.22	+0.0
2,930,646	-		GFF2873	0.23	-0.1
2,930,646	-		GFF2873	0.23	-0.1
2,930,646	-		GFF2873	0.23	-1.8
2,930,646	-		GFF2873	0.23	+1.3
2,930,678	-		GFF2873	0.26	-1.8
2,930,696	+		GFF2873	0.28	-1.0
2,930,704	-		GFF2873	0.29	-0.6
2,930,704	-		GFF2873	0.29	+0.1
2,930,711	-		GFF2873	0.30	-1.8
2,930,719	-		GFF2873	0.31	-0.6
2,930,729	-		GFF2873	0.32	-0.3
2,930,797	+		GFF2873	0.40	-0.2
2,930,851	+		GFF2873	0.46	+0.2
2,930,851	+		GFF2873	0.46	+0.4
2,930,851	+		GFF2873	0.46	-0.2
2,930,872	-		GFF2873	0.48	-0.6
2,930,882	-		GFF2873	0.49	-1.3
2,930,882	-		GFF2873	0.49	+0.2
2,930,886	+		GFF2873	0.50	-2.3
2,930,887	+		GFF2873	0.50	-0.4
2,930,887	+		GFF2873	0.50	-0.6
2,930,894	-		GFF2873	0.50	-1.0
2,930,894	-		GFF2873	0.50	-1.4
2,930,910	-		GFF2873	0.52	-2.3
2,930,982	+		GFF2873	0.60	-0.1
2,930,991	-		GFF2873	0.61	-0.6
2,930,993	+		GFF2873	0.62	+0.9
2,930,993	+		GFF2873	0.62	-2.6
2,930,998	+		GFF2873	0.62	+1.8
2,931,001	-		GFF2873	0.62	+0.0
2,931,001	-		GFF2873	0.62	+0.1
2,931,001	-		GFF2873	0.62	-3.9
2,931,035	-		GFF2873	0.66	+0.3
2,931,045	-		GFF2873	0.67	+0.0
2,931,056	+		GFF2873	0.69	-0.4
2,931,064	-		GFF2873	0.70	-0.2
2,931,064	-		GFF2873	0.70	+0.9
2,931,064	-		GFF2873	0.70	-0.2
2,931,079	-		GFF2873	0.71	-0.4
2,931,081	+		GFF2873	0.72	+0.1
2,931,086	+		GFF2873	0.72	-0.0
2,931,086	+		GFF2873	0.72	+0.8
2,931,089	-		GFF2873	0.72	-1.7
2,931,089	-		GFF2873	0.72	-0.3
2,931,089	-		GFF2873	0.72	-0.3
2,931,094	-		GFF2873	0.73	-0.2
2,931,094	-		GFF2873	0.73	-0.6
2,931,103	-		GFF2873	0.74	-1.2
2,931,145	+		GFF2873	0.79	-0.2
2,931,153	-		GFF2873	0.80	-1.1
2,931,153	-		GFF2873	0.80	-1.7
2,931,160	+		GFF2873	0.80	+0.0
2,931,185	-		GFF2873	0.83	-0.6
2,931,185	-		GFF2873	0.83	-0.0
2,931,185	-		GFF2873	0.83	+0.4
2,931,195	-		GFF2873	0.84	+0.8
2,931,196	+		GFF2873	0.84	+0.0
2,931,204	-		GFF2873	0.85	-0.8
2,931,210	+		GFF2873	0.86	+0.8
2,931,212	+		GFF2873	0.86	+0.1
2,931,219	+		GFF2873	0.87	+1.0
2,931,242	+		GFF2873	0.90	-0.7
2,931,242	+		GFF2873	0.90	+0.2
2,931,245	-				-1.3
2,931,245	-				+0.4
2,931,250	-				-1.2
2,931,250	-				-1.5
2,931,250	-				+0.1
2,931,312	+				-0.3
2,931,312	+				+0.1
2,931,315	-				-1.2
2,931,317	-				-0.2
2,931,320	-				+0.8
2,931,356	+				+1.2
2,931,356	+				-0.8
2,931,356	+				-0.1
2,931,364	-				+0.2
2,931,364	-				-1.1
2,931,364	-				-0.1
2,931,379	-				-1.8
2,931,471	-				-1.0
2,931,481	+				-0.5
2,931,485	-				+0.3
2,931,515	+				-0.7
2,931,515	+				-0.7
2,931,515	+				-2.0
2,931,518	-				+0.8
2,931,518	-				-0.3
2,931,523	-				+0.6
2,931,523	-				-0.3
2,931,523	-				+0.8
2,931,523	-				-0.0
2,931,534	+				+0.3
2,931,534	+				-0.1
2,931,534	+				+0.8
2,931,534	+				-0.0
2,931,541	+				+0.4
2,931,559	-				-1.2
2,931,579	+				-0.2
2,931,579	-				+0.8
2,931,580	+				+1.1
2,931,589	+				-0.3
2,931,589	+				-1.3
2,931,597	-				-0.6
2,931,597	-				-1.8
2,931,607	-				-0.1
2,931,621	-				-1.2
2,931,633	+				+1.1
2,931,638	+				-0.2
2,931,641	-				+0.1
2,931,646	-				+0.2
2,931,648	+				-0.2
2,931,648	+				-1.3
2,931,648	+				+0.1
2,931,652	+				+0.1
2,931,655	-				-0.8
2,931,656	-				+1.2
2,931,656	-				+0.9
2,931,665	-				+1.2
2,931,666	+				+0.7
2,931,673	+				-0.9
2,931,673	-				+0.2
2,931,675	+				-0.5
2,931,683	-				+0.4
2,931,683	-				+1.1
2,931,703	+		GFF2874	0.10	+0.6
2,931,727	+		GFF2874	0.11	-0.7
2,931,733	-		GFF2874	0.12	+0.4
2,931,750	+		GFF2874	0.13	-0.9
2,931,750	+		GFF2874	0.13	-1.3
2,931,750	+		GFF2874	0.13	-1.2
2,931,758	-		GFF2874	0.13	-1.0
2,931,758	-		GFF2874	0.13	-0.3
2,931,758	-		GFF2874	0.13	-0.1
2,931,758	-		GFF2874	0.13	-0.0
2,931,763	-		GFF2874	0.13	+0.2
2,931,767	+		GFF2874	0.13	-0.6
2,931,785	+		GFF2874	0.14	+0.9
2,931,785	+		GFF2874	0.14	+0.1
2,931,785	+		GFF2874	0.14	-0.1
2,931,785	+		GFF2874	0.14	-0.7
2,931,785	+		GFF2874	0.14	-2.0
2,931,793	-		GFF2874	0.15	-2.3
2,931,793	-		GFF2874	0.15	+0.1
2,931,793	-		GFF2874	0.15	-1.3
2,931,793	-		GFF2874	0.15	+1.0
2,931,793	-		GFF2874	0.15	-0.4
2,931,793	-		GFF2874	0.15	-1.5
2,931,793	-		GFF2874	0.15	-0.1
2,931,793	-		GFF2874	0.15	-1.7
2,931,799	+		GFF2874	0.15	-0.5
2,931,800	+		GFF2874	0.15	-3.0
2,931,808	+		GFF2874	0.15	-0.5
2,931,808	-		GFF2874	0.15	-1.2
2,931,824	-		GFF2874	0.16	-0.3
2,931,843	+		GFF2874	0.17	-1.0
2,931,848	+		GFF2874	0.17	+1.4
2,931,848	+		GFF2874	0.17	-0.3
2,931,853	-		GFF2874	0.18	+0.5
2,931,856	-		GFF2874	0.18	+0.2
2,931,863	+		GFF2874	0.18	+0.0
2,931,871	-		GFF2874	0.18	-0.0
2,931,871	-		GFF2874	0.18	-0.3
2,931,881	-		GFF2874	0.19	-0.1
2,931,898	-		GFF2874	0.20	-0.6
2,931,913	-		GFF2874	0.20	+0.0
2,931,919	-		GFF2874	0.21	-0.1
2,931,924	-		GFF2874	0.21	+0.3
2,931,924	-		GFF2874	0.21	+0.3
2,931,926	+		GFF2874	0.21	+0.2
2,931,934	-		GFF2874	0.21	+0.6
2,931,999	-		GFF2874	0.25	+1.2
2,932,001	-		GFF2874	0.25	+0.0
2,932,003	+		GFF2874	0.25	+0.9
2,932,028	-		GFF2874	0.26	-0.1
2,932,041	+		GFF2874	0.27	-2.2
2,932,049	-		GFF2874	0.27	+0.7
2,932,064	+		GFF2874	0.28	+0.9
2,932,072	-		GFF2874	0.28	-0.5
2,932,082	-		GFF2874	0.29	-1.6
2,932,099	+		GFF2874	0.29	+0.9
2,932,104	+		GFF2874	0.30	-0.4
2,932,104	+		GFF2874	0.30	+1.0
2,932,112	-		GFF2874	0.30	-0.3
2,932,131	-		GFF2874	0.31	+0.1
2,932,131	-		GFF2874	0.31	-0.3
2,932,140	+		GFF2874	0.31	-0.8
2,932,155	-		GFF2874	0.32	-0.8
2,932,155	-		GFF2874	0.32	+0.3
2,932,155	-		GFF2874	0.32	+0.9
2,932,176	-		GFF2874	0.33	-1.1
2,932,186	+		GFF2874	0.34	-0.1
2,932,186	+		GFF2874	0.34	+0.2
2,932,202	+		GFF2874	0.34	-0.2
2,932,204	-		GFF2874	0.34	-1.6
2,932,217	-		GFF2874	0.35	-1.5
2,932,217	-		GFF2874	0.35	+0.0
2,932,217	-		GFF2874	0.35	+0.1
2,932,217	-		GFF2874	0.35	+0.3
2,932,233	+		GFF2874	0.36	+0.4
2,932,263	+		GFF2874	0.37	-1.0
2,932,265	+		GFF2874	0.37	+0.4
2,932,271	-		GFF2874	0.38	-0.2
2,932,277	-		GFF2874	0.38	-1.4
2,932,311	+		GFF2874	0.40	-1.1
2,932,320	+		GFF2874	0.40	-1.3