Strain Fitness in Sphingobium sp. HT1-2 around GFF2871

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,927,726	+		GFF2870	0.23	+0.0
2,927,786	+		GFF2870	0.28	-1.3
2,927,786	+		GFF2870	0.28	-0.3
2,927,809	-		GFF2870	0.30	-0.1
2,927,814	-		GFF2870	0.31	+0.2
2,927,816	+		GFF2870	0.31	+0.2
2,927,833	+		GFF2870	0.32	-0.2
2,927,841	-		GFF2870	0.33	-2.1
2,927,846	-		GFF2870	0.33	-1.6
2,927,852	-		GFF2870	0.34	+0.1
2,927,874	+		GFF2870	0.36	+1.2
2,927,876	-		GFF2870	0.36	-0.7
2,927,882	-		GFF2870	0.36	+1.2
2,927,894	+		GFF2870	0.38	-0.6
2,927,894	+		GFF2870	0.38	-0.5
2,927,894	+		GFF2870	0.38	-0.3
2,927,894	+		GFF2870	0.38	-1.0
2,927,894	+		GFF2870	0.38	-0.5
2,927,894	+		GFF2870	0.38	-1.7
2,927,894	+		GFF2870	0.38	-0.4
2,927,894	+		GFF2870	0.38	-0.8
2,927,894	+		GFF2870	0.38	-0.1
2,927,894	+		GFF2870	0.38	-0.7
2,927,894	+		GFF2870	0.38	+1.2
2,927,894	+		GFF2870	0.38	+1.1
2,927,894	+		GFF2870	0.38	-0.8
2,927,894	+		GFF2870	0.38	-0.1
2,927,901	-		GFF2870	0.38	-0.8
2,927,902	-		GFF2870	0.38	-0.2
2,927,902	-		GFF2870	0.38	-0.7
2,927,902	-		GFF2870	0.38	+0.1
2,927,902	-		GFF2870	0.38	+0.4
2,927,902	-		GFF2870	0.38	+0.4
2,927,902	-		GFF2870	0.38	+0.1
2,927,902	-		GFF2870	0.38	-0.1
2,927,902	-		GFF2870	0.38	+0.5
2,927,903	-		GFF2870	0.38	-1.4
2,927,909	-		GFF2870	0.39	-1.3
2,927,910	+		GFF2870	0.39	-0.8
2,927,918	-		GFF2870	0.40	-0.2
2,927,930	-		GFF2870	0.41	-2.1
2,927,939	+		GFF2870	0.41	+1.2
2,927,947	-		GFF2870	0.42	-1.5
2,927,958	+		GFF2870	0.43	-0.8
2,927,963	+		GFF2870	0.43	-2.0
2,927,963	+		GFF2870	0.43	-0.7
2,927,971	-		GFF2870	0.44	+0.7
2,927,992	+		GFF2870	0.46	-0.1
2,928,052	-		GFF2870	0.51	-0.3
2,928,078	+		GFF2870	0.53	+0.1
2,928,087	+		GFF2870	0.54	-1.3
2,928,090	-		GFF2870	0.55	-2.4
2,928,107	-		GFF2870	0.56	-1.7
2,928,113	+		GFF2870	0.57	+1.2
2,928,121	+		GFF2870	0.57	+0.8
2,928,122	+		GFF2870	0.57	+0.1
2,928,122	+		GFF2870	0.57	+1.5
2,928,122	-		GFF2870	0.57	-0.2
2,928,166	+		GFF2870	0.61	+0.2
2,928,168	+		GFF2870	0.61	-1.1
2,928,175	-		GFF2870	0.62	-1.8
2,928,177	+		GFF2870	0.62	-0.1
2,928,178	+		GFF2870	0.62	+0.6
2,928,178	+		GFF2870	0.62	-2.4
2,928,183	+		GFF2870	0.63	-1.5
2,928,183	+		GFF2870	0.63	-0.1
2,928,186	-		GFF2870	0.63	+1.4
2,928,186	-		GFF2870	0.63	-0.5
2,928,188	+		GFF2870	0.63	-1.7
2,928,188	+		GFF2870	0.63	-0.2
2,928,188	+		GFF2870	0.63	-0.4
2,928,188	+		GFF2870	0.63	-0.0
2,928,193	+		GFF2870	0.63	-2.3
2,928,196	-		GFF2870	0.64	-1.6
2,928,196	-		GFF2870	0.64	+0.0
2,928,196	-		GFF2870	0.64	-0.7
2,928,196	-		GFF2870	0.64	+0.2
2,928,196	-		GFF2870	0.64	-2.2
2,928,196	-		GFF2870	0.64	-0.5
2,928,201	-		GFF2870	0.64	-0.1
2,928,201	-		GFF2870	0.64	-0.2
2,928,201	-		GFF2870	0.64	+0.8
2,928,201	-		GFF2870	0.64	-0.5
2,928,201	-		GFF2870	0.64	-0.8
2,928,223	+		GFF2870	0.66	+0.4
2,928,225	-		GFF2870	0.66	+0.4
2,928,231	-		GFF2870	0.67	+0.8
2,928,233	-		GFF2870	0.67	-0.7
2,928,272	+		GFF2870	0.70	+0.6
2,928,272	+		GFF2870	0.70	+1.2
2,928,281	-		GFF2870	0.71	-1.8
2,928,281	-		GFF2870	0.71	+0.2
2,928,306	+		GFF2870	0.73	+0.1
2,928,330	-		GFF2870	0.75	-2.3
2,928,338	+		GFF2870	0.76	-0.5
2,928,347	-		GFF2870	0.77	+1.7
2,928,354	+		GFF2870	0.77	-1.1
2,928,354	+		GFF2870	0.77	-1.2
2,928,354	+		GFF2870	0.77	+0.0
2,928,357	+		GFF2870	0.78	-1.1
2,928,385	+		GFF2870	0.80	+1.8
2,928,395	+		GFF2870	0.81	+0.1
2,928,395	+		GFF2870	0.81	+0.9
2,928,395	+		GFF2870	0.81	+0.1
2,928,402	+		GFF2870	0.82	+1.0
2,928,415	-		GFF2870	0.83	-0.3
2,928,446	-		GFF2870	0.85	-0.4
2,928,464	-		GFF2870	0.87	-0.8
2,928,475	-		GFF2870	0.88	-0.3
2,928,477	+		GFF2870	0.88	-0.7
2,928,485	-		GFF2870	0.89	+0.7
2,928,493	+		GFF2870	0.89	-1.6
2,928,520	+				-0.8
2,928,520	+				-0.3
2,928,522	-				+0.7
2,928,522	-				-0.3
2,928,522	-				-0.6
2,928,535	+				+0.1
2,928,541	+				+0.8
2,928,543	-				-0.8
2,928,543	-				-2.3
2,928,549	+				+1.1
2,928,549	-				+0.9
2,928,551	+				+0.5
2,928,564	-				-1.2
2,928,596	+				-0.1
2,928,601	+				+0.5
2,928,650	+				-0.2
2,928,655	+				-0.7
2,928,655	+				+0.2
2,928,655	+				+0.7
2,928,663	-				-0.6
2,928,672	+				-1.9
2,928,672	+				+0.2
2,928,678	+				-1.2
2,928,678	+				-0.7
2,928,678	+				-0.6
2,928,680	-				+0.8
2,928,686	-				-0.3
2,928,686	-				-0.9
2,928,687	+				-0.5
2,928,687	+				+0.2
2,928,688	-				-1.9
2,928,695	-				+0.6
2,928,695	-				-0.5
2,928,700	-				-0.6
2,928,712	+				-0.4
2,928,720	+				-0.4
2,928,720	+				-1.0
2,928,720	-				+0.1
2,928,720	-				+0.7
2,928,720	-				-1.1
2,928,720	-				-0.4
2,928,720	-				+0.2
2,928,720	-				-1.1
2,928,720	-				-0.3
2,928,778	+				-0.8
2,928,789	+		GFF2871	0.11	+0.2
2,928,803	+		GFF2871	0.13	-0.3
2,928,808	+		GFF2871	0.13	+0.4
2,928,808	+		GFF2871	0.13	-1.7
2,928,811	-		GFF2871	0.14	+1.5
2,928,816	-		GFF2871	0.15	-0.7
2,928,816	-		GFF2871	0.15	-1.2
2,928,823	+		GFF2871	0.16	-0.9
2,928,823	+		GFF2871	0.16	-1.3
2,928,823	+		GFF2871	0.16	+0.4
2,928,831	-		GFF2871	0.17	+0.5
2,928,831	-		GFF2871	0.17	+0.4
2,928,831	-		GFF2871	0.17	-0.2
2,928,854	+		GFF2871	0.20	-0.8
2,928,854	+		GFF2871	0.20	-0.0
2,928,906	-		GFF2871	0.28	+0.4
2,928,909	+		GFF2871	0.28	-0.5
2,928,917	-		GFF2871	0.29	-1.0
2,928,928	-		GFF2871	0.31	+2.0
2,928,939	+		GFF2871	0.33	-0.5
2,928,939	+		GFF2871	0.33	-0.2
2,928,939	+		GFF2871	0.33	-0.1
2,928,939	+		GFF2871	0.33	-1.1
2,928,939	+		GFF2871	0.33	-1.1
2,928,939	+		GFF2871	0.33	-1.3
2,928,947	-		GFF2871	0.34	+0.2
2,928,947	-		GFF2871	0.34	+0.5
2,928,947	-		GFF2871	0.34	+0.3
2,928,947	-		GFF2871	0.34	-0.0
2,928,947	-		GFF2871	0.34	+1.1
2,928,947	-		GFF2871	0.34	-1.0
2,928,971	+		GFF2871	0.37	-0.9
2,928,975	-		GFF2871	0.38	-0.5
2,928,980	-		GFF2871	0.39	-0.1
2,928,980	-		GFF2871	0.39	+0.3
2,928,980	-		GFF2871	0.39	+0.4
2,928,986	-		GFF2871	0.40	-1.5
2,928,986	-		GFF2871	0.40	-0.8
2,929,008	+		GFF2871	0.43	+1.1
2,929,008	+		GFF2871	0.43	-0.0
2,929,016	+		GFF2871	0.44	+0.1
2,929,016	+		GFF2871	0.44	-0.9
2,929,019	+		GFF2871	0.45	-1.3
2,929,029	-		GFF2871	0.46	+1.2
2,929,037	+		GFF2871	0.47	-0.3
2,929,037	+		GFF2871	0.47	+1.3
2,929,045	-		GFF2871	0.48	+0.2
2,929,045	-		GFF2871	0.48	-0.4
2,929,055	+		GFF2871	0.50	-1.1
2,929,060	+		GFF2871	0.51	-0.9
2,929,060	+		GFF2871	0.51	-0.3
2,929,063	-		GFF2871	0.51	-0.7
2,929,072	+		GFF2871	0.52	+1.2
2,929,079	+		GFF2871	0.53	+0.8
2,929,079	+		GFF2871	0.53	-1.9
2,929,087	-		GFF2871	0.55	-1.8
2,929,106	+		GFF2871	0.57	-0.8
2,929,106	+		GFF2871	0.57	-0.7
2,929,106	+		GFF2871	0.57	-0.9
2,929,106	+		GFF2871	0.57	+0.2
2,929,106	+		GFF2871	0.57	+1.0
2,929,106	+		GFF2871	0.57	-2.3
2,929,106	+		GFF2871	0.57	+0.5
2,929,114	-		GFF2871	0.59	-0.5
2,929,114	-		GFF2871	0.59	-1.1
2,929,114	-		GFF2871	0.59	+0.8
2,929,114	-		GFF2871	0.59	+0.4
2,929,114	-		GFF2871	0.59	+1.0
2,929,114	-		GFF2871	0.59	+0.4
2,929,114	-		GFF2871	0.59	+0.8
2,929,114	-		GFF2871	0.59	+1.1
2,929,114	-		GFF2871	0.59	-1.0
2,929,114	-		GFF2871	0.59	+0.8
2,929,114	-		GFF2871	0.59	+0.8
2,929,114	-		GFF2871	0.59	+0.7
2,929,114	-		GFF2871	0.59	-0.7
2,929,114	-		GFF2871	0.59	-0.1
2,929,114	-		GFF2871	0.59	-0.2
2,929,114	-		GFF2871	0.59	-2.9
2,929,114	-		GFF2871	0.59	-0.3
2,929,114	-		GFF2871	0.59	-0.3
2,929,114	-		GFF2871	0.59	-0.9
2,929,114	-		GFF2871	0.59	-0.4
2,929,125	-		GFF2871	0.60	-1.6
2,929,128	+		GFF2871	0.61	-0.8
2,929,136	-		GFF2871	0.62	+0.2
2,929,136	-		GFF2871	0.62	+2.0
2,929,136	-		GFF2871	0.62	+0.5
2,929,141	+		GFF2871	0.63	-0.9
2,929,141	-		GFF2871	0.63	-0.3
2,929,152	-		GFF2871	0.64	-1.1
2,929,178	+		GFF2871	0.68	+0.2
2,929,183	+		GFF2871	0.69	-0.3
2,929,188	+		GFF2871	0.70	+1.0
2,929,196	-		GFF2871	0.71	-1.3
2,929,226	+		GFF2871	0.75	-0.1
2,929,261	-		GFF2871	0.80	+0.0
2,929,278	+		GFF2871	0.83	-0.3
2,929,307	-		GFF2871	0.87	+0.2
2,929,307	-		GFF2871	0.87	-0.1
2,929,322	+		GFF2871	0.89	-0.3
2,929,327	+				-1.5
2,929,330	-				+0.3
2,929,335	-				+0.2
2,929,341	+				+0.3
2,929,394	+				-1.3
2,929,394	+				-0.1
2,929,394	+				-0.2
2,929,402	-				-0.1
2,929,402	-				-1.9
2,929,402	-				-1.9
2,929,409	+				+1.1
2,929,419	-				+0.9
2,929,419	-				-1.1
2,929,423	-				+0.2
2,929,443	-				-1.1
2,929,443	-				-0.1
2,929,454	-				-1.2
2,929,473	-				-0.3
2,929,502	-		GFF2872	0.11	-0.3
2,929,518	+		GFF2872	0.12	+0.3
2,929,522	-		GFF2872	0.13	-0.0
2,929,536	-		GFF2872	0.14	-0.7
2,929,551	+		GFF2872	0.16	-0.8
2,929,554	-		GFF2872	0.16	-0.3
2,929,564	+		GFF2872	0.17	-0.1
2,929,572	-		GFF2872	0.18	-0.2
2,929,573	+		GFF2872	0.18	-0.5
2,929,590	-		GFF2872	0.19	-0.7
2,929,618	-		GFF2872	0.22	-0.6
2,929,622	+		GFF2872	0.22	-0.2
2,929,636	-		GFF2872	0.24	-0.5
2,929,641	-		GFF2872	0.24	+0.5
2,929,654	+		GFF2872	0.25	-0.5
2,929,682	+		GFF2872	0.28	-1.1
2,929,682	+		GFF2872	0.28	+0.2
2,929,704	+		GFF2872	0.30	+0.6
2,929,721	-		GFF2872	0.32	-0.5
2,929,735	+		GFF2872	0.33	+1.8
2,929,743	-		GFF2872	0.34	-2.0
2,929,770	+		GFF2872	0.36	-0.3
2,929,788	-		GFF2872	0.38	-0.7
2,929,796	+		GFF2872	0.39	+1.1
2,929,798	+		GFF2872	0.39	+1.2
2,929,798	+		GFF2872	0.39	-0.5
2,929,804	-		GFF2872	0.39	-0.4
2,929,819	-		GFF2872	0.41	+0.2
2,929,819	-		GFF2872	0.41	-0.9
2,929,832	-		GFF2872	0.42	-2.1
2,929,840	+		GFF2872	0.43	-0.6
2,929,848	-		GFF2872	0.43	+0.2
2,929,858	-		GFF2872	0.44	-1.5
2,929,860	+		GFF2872	0.45	+0.8
2,929,882	-		GFF2872	0.47	+0.8
2,929,883	-		GFF2872	0.47	-2.0
2,929,918	+		GFF2872	0.50	-0.4
2,929,924	-		GFF2872	0.51	-2.1
2,929,945	+		GFF2872	0.53	+0.1
2,929,945	+		GFF2872	0.53	-1.2
2,929,945	+		GFF2872	0.53	-0.2
2,929,945	+		GFF2872	0.53	-0.2
2,929,953	-		GFF2872	0.53	-1.1
2,929,953	-		GFF2872	0.53	+1.2
2,929,953	-		GFF2872	0.53	+1.2
2,929,953	-		GFF2872	0.53	-1.8
2,929,953	-		GFF2872	0.53	+0.1
2,929,953	-		GFF2872	0.53	-0.4
2,929,967	-		GFF2872	0.55	+0.2
2,929,979	+		GFF2872	0.56	-1.6
2,929,979	+		GFF2872	0.56	+0.2
2,929,979	+		GFF2872	0.56	+0.5
2,929,979	+		GFF2872	0.56	-0.5
2,929,987	-		GFF2872	0.57	+0.2
2,929,987	-		GFF2872	0.57	-0.8
2,929,987	-		GFF2872	0.57	+0.2
2,929,987	-		GFF2872	0.57	+0.7
2,929,987	-		GFF2872	0.57	-0.4
2,929,987	-		GFF2872	0.57	-1.5
2,929,987	-		GFF2872	0.57	-1.7
2,929,987	-		GFF2872	0.57	-1.0
2,929,987	-		GFF2872	0.57	+0.8
2,929,987	-		GFF2872	0.57	-2.3
2,930,025	+		GFF2872	0.60	-0.6
2,930,033	-		GFF2872	0.61	-1.3
2,930,033	-		GFF2872	0.61	-2.1
2,930,047	+		GFF2872	0.62	-1.2
2,930,047	+		GFF2872	0.62	-1.1
2,930,047	+		GFF2872	0.62	-0.6
2,930,047	+		GFF2872	0.62	+0.4
2,930,047	+		GFF2872	0.62	+0.9
2,930,047	+		GFF2872	0.62	+0.7
2,930,047	+		GFF2872	0.62	+0.1
2,930,047	+		GFF2872	0.62	-2.6
2,930,047	+		GFF2872	0.62	-0.2
2,930,055	-		GFF2872	0.63	+0.0
2,930,055	-		GFF2872	0.63	-1.1
2,930,055	-		GFF2872	0.63	-0.6
2,930,055	-		GFF2872	0.63	-0.3
2,930,055	-		GFF2872	0.63	-0.3
2,930,055	-		GFF2872	0.63	-0.3
2,930,082	-		GFF2872	0.65	+0.0
2,930,107	+		GFF2872	0.68	-0.6
2,930,113	-		GFF2872	0.68	-0.7
2,930,114	-		GFF2872	0.68	-1.6
2,930,119	-		GFF2872	0.69	-1.1
2,930,140	+		GFF2872	0.71	-0.8
2,930,181	+		GFF2872	0.75	+0.5
2,930,189	-		GFF2872	0.75	-2.7
2,930,196	+		GFF2872	0.76	+0.7
2,930,204	-		GFF2872	0.77	-0.9
2,930,233	+		GFF2872	0.80	-0.1
2,930,252	+		GFF2872	0.81	-0.5
2,930,264	-		GFF2872	0.83	+0.1
2,930,264	-		GFF2872	0.83	-1.3
2,930,379	-				-1.0
2,930,379	-				-0.6
2,930,384	-				+1.0
2,930,384	-				-1.6
2,930,387	+				+0.8
2,930,389	+				-0.8