Strain Fitness in Sphingobium sp. HT1-2 around GFF2861

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,917,131	-		GFF2859	0.57	-0.5
2,917,131	-		GFF2859	0.57	-0.8
2,917,165	+		GFF2859	0.60	-0.1
2,917,208	-		GFF2859	0.63	-0.2
2,917,212	-		GFF2859	0.63	-0.6
2,917,225	+		GFF2859	0.64	-0.2
2,917,225	+		GFF2859	0.64	+0.7
2,917,233	-		GFF2859	0.65	+0.6
2,917,233	-		GFF2859	0.65	+0.2
2,917,233	-		GFF2859	0.65	-1.4
2,917,233	-		GFF2859	0.65	-0.2
2,917,233	-		GFF2859	0.65	+0.3
2,917,255	+		GFF2859	0.67	-0.2
2,917,303	-		GFF2859	0.70	-1.3
2,917,322	+		GFF2859	0.72	+0.8
2,917,335	-		GFF2859	0.73	-1.9
2,917,337	+		GFF2859	0.73	-0.3
2,917,337	+		GFF2859	0.73	-0.7
2,917,345	-		GFF2859	0.73	+1.2
2,917,345	-		GFF2859	0.73	-1.7
2,917,345	-		GFF2859	0.73	-1.5
2,917,345	-		GFF2859	0.73	-0.3
2,917,345	-		GFF2859	0.73	-2.5
2,917,361	-		GFF2859	0.75	-0.8
2,917,439	+		GFF2859	0.81	+0.8
2,917,439	+		GFF2859	0.81	-1.0
2,917,447	-		GFF2859	0.81	-0.6
2,917,492	+		GFF2859	0.85	-2.1
2,917,498	+		GFF2859	0.85	-1.6
2,917,498	+		GFF2859	0.85	+0.4
2,917,498	+		GFF2859	0.85	+0.4
2,917,498	+		GFF2859	0.85	-1.4
2,917,498	+		GFF2859	0.85	-2.3
2,917,498	+		GFF2859	0.85	-0.6
2,917,498	+		GFF2859	0.85	+1.1
2,917,498	+		GFF2859	0.85	+1.1
2,917,498	+		GFF2859	0.85	+0.5
2,917,506	-		GFF2859	0.86	-1.0
2,917,506	-		GFF2859	0.86	-1.6
2,917,506	-		GFF2859	0.86	-2.5
2,917,506	-		GFF2859	0.86	-0.3
2,917,506	-		GFF2859	0.86	-1.0
2,917,506	-		GFF2859	0.86	+1.1
2,917,506	-		GFF2859	0.86	-1.9
2,917,506	-		GFF2859	0.86	-2.5
2,917,506	-		GFF2859	0.86	-0.2
2,917,515	+		GFF2859	0.87	+1.0
2,917,534	+		GFF2859	0.88	+0.4
2,917,534	+		GFF2859	0.88	+0.2
2,917,537	-		GFF2859	0.88	-1.3
2,917,542	-		GFF2859	0.89	-0.5
2,917,542	-		GFF2859	0.89	-0.3
2,917,566	-				+0.2
2,917,576	-				+0.7
2,917,603	+				-0.5
2,917,603	+				-0.2
2,917,603	+				-0.2
2,917,606	-				-0.6
2,917,608	+				+0.5
2,917,608	+				-0.9
2,917,608	+				-0.8
2,917,611	-				-1.2
2,917,611	-				-1.8
2,917,611	-				+0.4
2,917,616	+				+1.1
2,917,616	-				+1.5
2,917,618	+				-1.0
2,917,624	-				-0.3
2,917,631	-				-2.1
2,917,635	+				-0.6
2,917,635	+				+0.4
2,917,635	+				-0.8
2,917,635	+				-1.2
2,917,637	+				+0.7
2,917,637	+				-0.1
2,917,637	+				+0.2
2,917,637	+				-0.5
2,917,637	+				-1.2
2,917,643	-				+0.8
2,917,645	-				+0.4
2,917,645	-				-0.5
2,917,650	-				+0.5
2,917,756	+		GFF2860	0.14	-0.9
2,917,759	-		GFF2860	0.15	+0.7
2,917,762	-		GFF2860	0.16	-2.2
2,917,764	-		GFF2860	0.16	-0.8
2,917,809	+		GFF2860	0.26	-0.8
2,917,815	-		GFF2860	0.28	+0.5
2,917,815	-		GFF2860	0.28	-0.9
2,917,817	-		GFF2860	0.28	-0.3
2,917,817	-		GFF2860	0.28	-0.2
2,917,817	-		GFF2860	0.28	-1.6
2,917,844	+		GFF2860	0.34	-1.1
2,917,847	+		GFF2860	0.35	-0.0
2,917,847	+		GFF2860	0.35	-0.3
2,917,860	-		GFF2860	0.38	-1.3
2,917,860	-		GFF2860	0.38	-0.8
2,917,865	+		GFF2860	0.39	-1.5
2,917,865	+		GFF2860	0.39	-0.7
2,917,865	+		GFF2860	0.39	+0.7
2,917,865	+		GFF2860	0.39	-1.3
2,917,865	+		GFF2860	0.39	-2.1
2,917,865	+		GFF2860	0.39	-0.3
2,917,865	+		GFF2860	0.39	-0.3
2,917,865	+		GFF2860	0.39	-1.5
2,917,865	+		GFF2860	0.39	-0.0
2,917,873	-		GFF2860	0.41	+0.4
2,917,873	-		GFF2860	0.41	+0.4
2,917,873	-		GFF2860	0.41	-2.0
2,917,882	+		GFF2860	0.43	-0.3
2,917,884	+		GFF2860	0.43	+0.5
2,917,890	-		GFF2860	0.45	-1.3
2,917,890	-		GFF2860	0.45	-0.7
2,917,918	+		GFF2860	0.51	-0.5
2,917,949	+		GFF2860	0.58	-1.7
2,917,954	+		GFF2860	0.59	-3.0
2,917,954	+		GFF2860	0.59	+0.9
2,917,957	-		GFF2860	0.60	+0.5
2,917,957	-		GFF2860	0.60	+0.3
2,917,962	-		GFF2860	0.61	-0.4
2,917,962	-		GFF2860	0.61	+0.1
2,917,962	-		GFF2860	0.61	-0.5
2,917,966	+		GFF2860	0.62	+0.7
2,917,966	+		GFF2860	0.62	-0.7
2,917,966	+		GFF2860	0.62	-0.2
2,917,974	-		GFF2860	0.64	-0.0
2,917,976	+		GFF2860	0.64	+1.1
2,917,976	+		GFF2860	0.64	+0.8
2,917,978	+		GFF2860	0.65	-0.0
2,917,984	-		GFF2860	0.66	-0.3
2,917,984	-		GFF2860	0.66	+0.4
2,917,984	-		GFF2860	0.66	+0.1
2,918,008	+		GFF2860	0.72	+0.0
2,918,008	+		GFF2860	0.72	-0.2
2,918,008	+		GFF2860	0.72	-0.4
2,918,010	-		GFF2860	0.72	-1.3
2,918,016	-		GFF2860	0.74	-0.8
2,918,016	-		GFF2860	0.74	-1.5
2,918,016	-		GFF2860	0.74	-0.9
2,918,016	-		GFF2860	0.74	-0.1
2,918,016	-		GFF2860	0.74	-0.1
2,918,016	-		GFF2860	0.74	-1.1
2,918,057	-		GFF2860	0.83	-0.9
2,918,057	-		GFF2860	0.83	-0.4
2,918,059	+		GFF2860	0.83	+0.6
2,918,059	+		GFF2860	0.83	-1.0
2,918,059	+		GFF2860	0.83	-0.2
2,918,059	+		GFF2860	0.83	-1.0
2,918,059	+		GFF2860	0.83	-0.8
2,918,067	-		GFF2860	0.85	+1.4
2,918,067	-		GFF2860	0.85	+1.6
2,918,067	-		GFF2860	0.85	-1.2
2,918,067	-		GFF2860	0.85	-1.2
2,918,067	-		GFF2860	0.85	-0.6
2,918,067	-		GFF2860	0.85	-1.6
2,918,067	-		GFF2860	0.85	+0.6
2,918,067	-		GFF2860	0.85	+0.3
2,918,067	-		GFF2860	0.85	-1.4
2,918,067	-		GFF2860	0.85	-1.7
2,918,067	-		GFF2860	0.85	+0.2
2,918,070	-		GFF2860	0.86	-1.5
2,918,074	+		GFF2860	0.87	-2.0
2,918,163	+				-1.6
2,918,194	+				-0.3
2,918,231	+		GFF2861	0.11	-1.3
2,918,234	-		GFF2861	0.11	-1.3
2,918,234	-		GFF2861	0.11	-0.4
2,918,236	+		GFF2861	0.11	-0.8
2,918,241	+		GFF2861	0.12	-1.1
2,918,241	+		GFF2861	0.12	-0.7
2,918,241	+		GFF2861	0.12	-0.5
2,918,246	+		GFF2861	0.12	+1.8
2,918,246	+		GFF2861	0.12	-0.0
2,918,246	+		GFF2861	0.12	+1.0
2,918,246	+		GFF2861	0.12	-1.6
2,918,249	-		GFF2861	0.13	-0.2
2,918,249	-		GFF2861	0.13	-1.3
2,918,249	-		GFF2861	0.13	-0.4
2,918,249	-		GFF2861	0.13	+0.2
2,918,249	-		GFF2861	0.13	+0.9
2,918,249	-		GFF2861	0.13	+1.3
2,918,251	+		GFF2861	0.13	-0.8
2,918,251	+		GFF2861	0.13	-0.2
2,918,254	-		GFF2861	0.13	+0.7
2,918,254	-		GFF2861	0.13	-0.1
2,918,254	-		GFF2861	0.13	-1.6
2,918,254	-		GFF2861	0.13	+0.2
2,918,254	-		GFF2861	0.13	-0.1
2,918,254	-		GFF2861	0.13	-0.2
2,918,259	-		GFF2861	0.14	-1.0
2,918,259	-		GFF2861	0.14	+0.2
2,918,265	+		GFF2861	0.14	+0.9
2,918,265	+		GFF2861	0.14	+0.1
2,918,273	-		GFF2861	0.15	-0.3
2,918,273	-		GFF2861	0.15	-1.2
2,918,273	-		GFF2861	0.15	+0.2
2,918,278	+		GFF2861	0.16	+0.3
2,918,286	+		GFF2861	0.17	-0.6
2,918,297	+		GFF2861	0.18	+0.9
2,918,305	-		GFF2861	0.19	-0.8
2,918,310	-		GFF2861	0.19	-0.3
2,918,310	-		GFF2861	0.19	-1.2
2,918,310	-		GFF2861	0.19	-0.7
2,918,310	-		GFF2861	0.19	-0.1
2,918,310	-		GFF2861	0.19	-0.6
2,918,310	-		GFF2861	0.19	-0.3
2,918,338	-		GFF2861	0.22	+1.0
2,918,340	+		GFF2861	0.23	-1.4
2,918,348	-		GFF2861	0.23	-0.8
2,918,366	+		GFF2861	0.25	+0.4
2,918,366	+		GFF2861	0.25	+0.4
2,918,370	+		GFF2861	0.26	-0.2
2,918,374	-		GFF2861	0.26	-1.5
2,918,374	-		GFF2861	0.26	+0.0
2,918,374	-		GFF2861	0.26	+0.2
2,918,388	-		GFF2861	0.28	+1.5
2,918,388	-		GFF2861	0.28	-0.4
2,918,399	+		GFF2861	0.29	+1.7
2,918,399	-		GFF2861	0.29	+0.8
2,918,407	-		GFF2861	0.30	-0.5
2,918,442	+		GFF2861	0.34	+0.2
2,918,442	+		GFF2861	0.34	-1.1
2,918,452	+		GFF2861	0.35	+0.7
2,918,457	+		GFF2861	0.35	-1.2
2,918,457	+		GFF2861	0.35	+0.5
2,918,457	+		GFF2861	0.35	-1.8
2,918,460	-		GFF2861	0.35	-0.4
2,918,462	+		GFF2861	0.36	+0.7
2,918,465	-		GFF2861	0.36	+0.2
2,918,477	+		GFF2861	0.37	-0.4
2,918,531	-		GFF2861	0.43	-1.2
2,918,550	-		GFF2861	0.45	+0.8
2,918,560	-		GFF2861	0.46	-1.3
2,918,592	+		GFF2861	0.50	+0.1
2,918,610	+		GFF2861	0.52	-1.1
2,918,612	-		GFF2861	0.52	+0.8
2,918,617	-		GFF2861	0.52	-1.2
2,918,618	-		GFF2861	0.53	-0.8
2,918,618	-		GFF2861	0.53	-0.8
2,918,630	+		GFF2861	0.54	+0.5
2,918,637	-		GFF2861	0.55	-1.3
2,918,638	+		GFF2861	0.55	-0.6
2,918,647	+		GFF2861	0.56	-1.0
2,918,647	+		GFF2861	0.56	-1.7
2,918,647	+		GFF2861	0.56	+0.4
2,918,648	-		GFF2861	0.56	-0.7
2,918,648	-		GFF2861	0.56	-2.9
2,918,648	-		GFF2861	0.56	+1.0
2,918,653	+		GFF2861	0.56	+0.2
2,918,653	+		GFF2861	0.56	-0.1
2,918,653	+		GFF2861	0.56	-1.8
2,918,658	+		GFF2861	0.57	+0.9
2,918,666	-		GFF2861	0.58	+1.0
2,918,676	-		GFF2861	0.59	-1.8
2,918,679	+		GFF2861	0.59	+1.1
2,918,679	+		GFF2861	0.59	-0.8
2,918,708	-		GFF2861	0.62	-0.1
2,918,733	-		GFF2861	0.65	-1.1
2,918,735	+		GFF2861	0.65	+0.4
2,918,747	-		GFF2861	0.66	-0.7
2,918,757	+		GFF2861	0.68	+0.5
2,918,757	+		GFF2861	0.68	-0.6
2,918,757	-		GFF2861	0.68	-0.8
2,918,765	-		GFF2861	0.68	-0.1
2,918,816	-		GFF2861	0.74	-0.2
2,918,820	-		GFF2861	0.74	+0.4
2,918,836	+		GFF2861	0.76	+0.4
2,918,844	+		GFF2861	0.77	-0.5
2,918,874	+		GFF2861	0.80	-1.1
2,918,874	+		GFF2861	0.80	-0.0
2,918,874	+		GFF2861	0.80	+0.8
2,918,874	+		GFF2861	0.80	-0.1
2,918,874	+		GFF2861	0.80	+1.1
2,918,874	+		GFF2861	0.80	+0.3
2,918,874	+		GFF2861	0.80	+0.8
2,918,874	+		GFF2861	0.80	-0.9
2,918,874	+		GFF2861	0.80	-1.8
2,918,874	+		GFF2861	0.80	+0.6
2,918,874	+		GFF2861	0.80	-1.3
2,918,874	+		GFF2861	0.80	-0.5
2,918,874	+		GFF2861	0.80	-0.5
2,918,874	+		GFF2861	0.80	+0.2
2,918,874	+		GFF2861	0.80	-1.3
2,918,874	+		GFF2861	0.80	-0.3
2,918,881	+		GFF2861	0.81	-0.2
2,918,881	+		GFF2861	0.81	-0.5
2,918,881	+		GFF2861	0.81	-1.7
2,918,881	+		GFF2861	0.81	-2.6
2,918,881	+		GFF2861	0.81	+0.3
2,918,881	+		GFF2861	0.81	+0.2
2,918,881	+		GFF2861	0.81	+0.0
2,918,881	+		GFF2861	0.81	-0.1
2,918,881	+		GFF2861	0.81	+0.8
2,918,881	+		GFF2861	0.81	-0.3
2,918,881	+		GFF2861	0.81	+0.7
2,918,881	+		GFF2861	0.81	-0.6
2,918,882	-		GFF2861	0.81	-0.5
2,918,882	-		GFF2861	0.81	+1.0
2,918,882	-		GFF2861	0.81	+1.0
2,918,882	-		GFF2861	0.81	-0.3
2,918,882	-		GFF2861	0.81	+0.8
2,918,882	-		GFF2861	0.81	-0.8
2,918,882	-		GFF2861	0.81	+0.0
2,918,882	-		GFF2861	0.81	-0.1
2,918,882	-		GFF2861	0.81	-0.5
2,918,882	-		GFF2861	0.81	+0.1
2,918,882	-		GFF2861	0.81	+0.2
2,918,882	-		GFF2861	0.81	-0.8
2,918,882	-		GFF2861	0.81	-0.8
2,918,882	-		GFF2861	0.81	-1.6
2,918,882	-		GFF2861	0.81	+0.4
2,918,882	-		GFF2861	0.81	-0.6
2,918,882	-		GFF2861	0.81	-0.8
2,918,882	-		GFF2861	0.81	+0.2
2,918,882	-		GFF2861	0.81	-0.3
2,918,882	-		GFF2861	0.81	-0.2
2,918,882	-		GFF2861	0.81	+0.3
2,918,882	-		GFF2861	0.81	-0.7
2,918,882	-		GFF2861	0.81	+0.1
2,918,882	-		GFF2861	0.81	-0.3
2,918,882	-		GFF2861	0.81	+2.0
2,918,882	-		GFF2861	0.81	-0.3
2,918,889	-		GFF2861	0.82	+0.0
2,918,889	-		GFF2861	0.82	-0.1
2,918,889	-		GFF2861	0.82	-0.4
2,918,889	-		GFF2861	0.82	-0.3
2,918,889	-		GFF2861	0.82	+0.9
2,918,889	-		GFF2861	0.82	-1.8
2,918,889	-		GFF2861	0.82	+0.4
2,918,894	-		GFF2861	0.82	-1.1
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2,918,905	+		GFF2861	0.83	-1.0
2,918,905	+		GFF2861	0.83	-2.8
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2,918,942	+		GFF2861	0.87	+0.3
2,918,942	+		GFF2861	0.87	+0.4
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2,918,942	+		GFF2861	0.87	-0.3
2,918,942	+		GFF2861	0.87	+1.0
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2,918,942	+		GFF2861	0.87	+0.7
2,918,942	+		GFF2861	0.87	-0.8
2,918,942	+		GFF2861	0.87	+1.9
2,918,950	-		GFF2861	0.88	-1.1
2,918,950	-		GFF2861	0.88	+1.5
2,918,950	-		GFF2861	0.88	+1.1
2,918,995	-				-1.1
2,919,062	+				+0.8
2,919,067	+				-1.3
2,919,068	-				+0.5
2,919,072	+				-1.5
2,919,075	-				-0.8
2,919,083	+				+0.8
2,919,083	+				+2.2
2,919,088	+				-0.7
2,919,088	+				-0.0
2,919,088	+				-1.2
2,919,088	+				-1.1
2,919,088	+				+0.6
2,919,089	-				-0.7
2,919,096	-				-0.1
2,919,101	+				+1.0
2,919,106	+				-2.1
2,919,106	+				-2.3
2,919,114	-				-0.3
2,919,114	-				+0.4
2,919,114	-				-2.1
2,919,116	-				+0.2
2,919,119	-				+0.1
2,919,130	+				+0.0
2,919,138	-				-1.2
2,919,184	+				-0.2
2,919,207	-				+0.2
2,919,207	-				-0.3
2,919,207	-				-1.2
2,919,247	+				-2.7
2,919,247	+				-1.8
2,919,247	+				-1.0
2,919,257	+				-0.3
2,919,257	+				-0.5
2,919,283	+				-1.8
2,919,311	+				-0.6
2,919,336	+				-0.3
2,919,343	-				-0.3
2,919,344	-				-2.5
2,919,353	+				+0.7
2,919,353	+				-0.8
2,919,372	-				-1.0
2,919,377	-				+1.6
2,919,377	-				+1.6
2,919,379	+				-1.6
2,919,379	+				-0.7
2,919,387	-				-0.4
2,919,387	-				-1.0
2,919,387	-				-0.4
2,919,400	+				+0.7
2,919,435	+		GFF2862	0.11	-0.6
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2,919,486	+		GFF2862	0.12	-0.3
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2,919,498	+		GFF2862	0.13	-1.2
2,919,498	+		GFF2862	0.13	-0.6
2,919,498	+		GFF2862	0.13	-0.9
2,919,506	-		GFF2862	0.13	-1.5
2,919,506	-		GFF2862	0.13	-0.4
2,919,522	+		GFF2862	0.13	+0.7
2,919,522	+		GFF2862	0.13	+0.7
2,919,522	+		GFF2862	0.13	+0.7
2,919,522	+		GFF2862	0.13	+1.0
2,919,522	+		GFF2862	0.13	-0.0
2,919,522	+		GFF2862	0.13	-0.3
2,919,522	+		GFF2862	0.13	+0.1
2,919,522	+		GFF2862	0.13	+0.5
2,919,523	-		GFF2862	0.13	+0.1
2,919,530	-		GFF2862	0.14	-1.4
2,919,530	-		GFF2862	0.14	-0.1
2,919,530	-		GFF2862	0.14	+0.2
2,919,530	-		GFF2862	0.14	+0.1
2,919,530	-		GFF2862	0.14	+0.3
2,919,530	-		GFF2862	0.14	-1.0
2,919,530	-		GFF2862	0.14	-0.4
2,919,553	-		GFF2862	0.14	-0.5
2,919,554	-		GFF2862	0.14	+1.4
2,919,587	-		GFF2862	0.15	-2.6
2,919,587	-		GFF2862	0.15	-2.7
2,919,602	-		GFF2862	0.16	+1.1
2,919,611	+		GFF2862	0.16	-0.8
2,919,619	-		GFF2862	0.16	-1.2
2,919,619	-		GFF2862	0.16	-0.3
2,919,629	+		GFF2862	0.17	-1.1
2,919,637	-		GFF2862	0.17	+0.0
2,919,646	+		GFF2862	0.17	-0.2
2,919,646	+		GFF2862	0.17	+0.5
2,919,646	+		GFF2862	0.17	+1.6
2,919,646	+		GFF2862	0.17	+0.3
2,919,651	+		GFF2862	0.17	-0.1
2,919,654	-		GFF2862	0.17	-0.6
2,919,654	-		GFF2862	0.17	+0.0
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2,919,722	+		GFF2862	0.19	-2.0
2,919,723	+		GFF2862	0.19	-0.6
2,919,730	+		GFF2862	0.20	-2.3
2,919,743	-		GFF2862	0.20	-2.6
2,919,760	+		GFF2862	0.21	+0.0
2,919,768	+		GFF2862	0.21	-0.7
2,919,774	+		GFF2862	0.21	-0.8
2,919,787	+		GFF2862	0.21	+1.1
2,919,809	-		GFF2862	0.22	+0.6
2,919,827	-		GFF2862	0.23	-0.8
2,919,844	-		GFF2862	0.23	+0.3
2,919,846	+		GFF2862	0.23	-0.1
2,919,868	+		GFF2862	0.24	-0.6
2,919,876	-		GFF2862	0.24	-0.2
2,919,885	-		GFF2862	0.24	+0.4
2,919,905	-		GFF2862	0.25	-2.5
2,919,911	-		GFF2862	0.25	-0.9
2,919,913	+		GFF2862	0.25	+0.4
2,919,913	+		GFF2862	0.25	-1.5
2,919,913	+		GFF2862	0.25	-0.3
2,919,913	+		GFF2862	0.25	-1.5
2,919,921	-		GFF2862	0.25	+0.2
2,919,921	-		GFF2862	0.25	-0.3
2,919,921	-		GFF2862	0.25	-1.1
2,919,921	-		GFF2862	0.25	-0.7
2,919,926	-		GFF2862	0.26	-0.3
2,919,935	+		GFF2862	0.26	-0.3
2,919,971	+		GFF2862	0.27	+0.8
2,919,989	-		GFF2862	0.27	+0.8
2,920,017	+		GFF2862	0.28	+0.4
2,920,034	+		GFF2862	0.29	-0.8
2,920,039	+		GFF2862	0.29	-0.7