Strain Fitness in Sphingobium sp. HT1-2 around GFF2853

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,908,465	-		GFF2852	0.21	+1.1
2,908,467	-		GFF2852	0.21	+1.8
2,908,467	-		GFF2852	0.21	+0.2
2,908,467	-		GFF2852	0.21	-0.7
2,908,467	-		GFF2852	0.21	-0.3
2,908,500	+		GFF2852	0.24	+0.2
2,908,505	+		GFF2852	0.25	-2.0
2,908,507	-		GFF2852	0.25	-0.3
2,908,512	-		GFF2852	0.25	-2.3
2,908,513	-		GFF2852	0.25	-0.0
2,908,513	-		GFF2852	0.25	-2.1
2,908,546	+		GFF2852	0.28	+0.7
2,908,556	+		GFF2852	0.29	-1.8
2,908,559	-		GFF2852	0.29	-0.6
2,908,559	-		GFF2852	0.29	+0.7
2,908,559	-		GFF2852	0.29	-0.4
2,908,564	-		GFF2852	0.29	+1.6
2,908,569	-		GFF2852	0.30	-0.7
2,908,608	-		GFF2852	0.33	-1.2
2,908,626	+		GFF2852	0.34	-0.3
2,908,626	+		GFF2852	0.34	-1.7
2,908,626	+		GFF2852	0.34	+0.2
2,908,626	+		GFF2852	0.34	+0.2
2,908,634	+		GFF2852	0.35	+0.1
2,908,634	-		GFF2852	0.35	+1.4
2,908,634	-		GFF2852	0.35	+1.0
2,908,634	-		GFF2852	0.35	-1.3
2,908,634	-		GFF2852	0.35	-0.3
2,908,642	-		GFF2852	0.36	-0.5
2,908,645	+		GFF2852	0.36	-0.1
2,908,653	+		GFF2852	0.36	+0.3
2,908,661	+		GFF2852	0.37	+0.3
2,908,674	-		GFF2852	0.38	+0.2
2,908,685	-		GFF2852	0.39	-1.2
2,908,723	-		GFF2852	0.42	-0.6
2,908,730	-		GFF2852	0.43	+0.4
2,908,730	-		GFF2852	0.43	-2.0
2,908,770	-		GFF2852	0.46	-1.0
2,908,775	-		GFF2852	0.46	+0.3
2,908,778	+		GFF2852	0.47	-0.2
2,908,778	+		GFF2852	0.47	-1.7
2,908,789	+		GFF2852	0.47	-0.8
2,908,789	+		GFF2852	0.47	+0.4
2,908,797	-		GFF2852	0.48	+0.6
2,908,841	+		GFF2852	0.52	-0.2
2,908,841	+		GFF2852	0.52	+0.0
2,908,841	+		GFF2852	0.52	+0.1
2,908,842	-		GFF2852	0.52	-0.7
2,908,844	-		GFF2852	0.52	+0.6
2,908,849	+		GFF2852	0.52	-1.6
2,908,849	-		GFF2852	0.52	-0.2
2,908,849	-		GFF2852	0.52	-1.8
2,908,849	-		GFF2852	0.52	+0.4
2,908,861	+		GFF2852	0.53	-0.7
2,908,861	+		GFF2852	0.53	+0.4
2,908,861	+		GFF2852	0.53	+0.4
2,908,863	+		GFF2852	0.53	-0.4
2,908,863	+		GFF2852	0.53	-0.2
2,908,869	-		GFF2852	0.54	+0.7
2,908,871	-		GFF2852	0.54	-1.1
2,908,871	-		GFF2852	0.54	-0.2
2,908,871	-		GFF2852	0.54	+0.3
2,908,871	-		GFF2852	0.54	+0.2
2,908,905	+		GFF2852	0.57	-0.3
2,908,953	-		GFF2852	0.61	-1.2
2,908,954	-		GFF2852	0.61	+0.7
2,908,954	-		GFF2852	0.61	-0.3
2,908,958	-		GFF2852	0.61	-1.0
2,908,978	+		GFF2852	0.63	-0.8
2,908,986	+		GFF2852	0.63	-1.7
2,908,991	+		GFF2852	0.64	-0.6
2,908,992	+		GFF2852	0.64	+1.1
2,909,067	+		GFF2852	0.70	-0.6
2,909,069	+		GFF2852	0.70	+0.1
2,909,106	+		GFF2852	0.73	+0.5
2,909,114	-		GFF2852	0.74	-1.0
2,909,132	-		GFF2852	0.75	-0.4
2,909,134	+		GFF2852	0.75	+0.4
2,909,142	-		GFF2852	0.76	+0.1
2,909,158	-		GFF2852	0.77	+0.7
2,909,195	-		GFF2852	0.80	+0.2
2,909,195	-		GFF2852	0.80	+0.3
2,909,207	+		GFF2852	0.81	+0.1
2,909,214	+		GFF2852	0.82	-1.0
2,909,215	-		GFF2852	0.82	-1.0
2,909,226	-		GFF2852	0.83	-0.8
2,909,252	-		GFF2852	0.85	-1.9
2,909,287	+		GFF2852	0.88	-1.2
2,909,294	-		GFF2852	0.88	-1.0
2,909,295	-		GFF2852	0.88	+0.4
2,909,295	-		GFF2852	0.88	+0.3
2,909,295	-		GFF2852	0.88	-1.6
2,909,295	-		GFF2852	0.88	-1.6
2,909,320	+				+0.1
2,909,320	+				-1.3
2,909,320	+				-0.9
2,909,328	-				+0.4
2,909,328	-				+0.2
2,909,328	-				-0.2
2,909,352	-				+1.2
2,909,397	-				-0.4
2,909,397	-				-0.0
2,909,426	+				+0.2
2,909,429	-				-0.2
2,909,449	-				-0.6
2,909,469	+				-0.2
2,909,477	-				-2.0
2,909,486	+				-1.2
2,909,486	+				+0.2
2,909,487	+				+0.8
2,909,487	+				+0.3
2,909,491	+				+0.0
2,909,495	-				+0.7
2,909,495	-				+0.7
2,909,527	+				-1.8
2,909,527	+				+1.0
2,909,535	-				+0.2
2,909,558	+				+0.2
2,909,558	+				-3.0
2,909,558	+				+0.8
2,909,558	+				-1.9
2,909,558	+				-1.2
2,909,558	+				-2.2
2,909,558	+				+0.2
2,909,558	+				-0.9
2,909,558	+				+1.3
2,909,558	+				-0.9
2,909,560	+				-0.8
2,909,560	+				+0.9
2,909,560	-				+0.9
2,909,565	+				-0.9
2,909,565	+				+1.0
2,909,565	+				-0.0
2,909,565	+				-0.1
2,909,565	+				+0.9
2,909,565	+				-0.2
2,909,565	+				-0.3
2,909,566	-				-0.0
2,909,566	-				+0.3
2,909,566	-				-0.3
2,909,566	-				+0.4
2,909,566	-				+0.1
2,909,566	-				+0.0
2,909,566	-				-1.3
2,909,568	-				-0.2
2,909,568	-				+0.2
2,909,573	-				-0.4
2,909,573	-				+0.2
2,909,573	-				-0.2
2,909,573	-				+0.4
2,909,573	-				-0.6
2,909,573	-				-0.8
2,909,573	-				-0.0
2,909,578	+				-0.5
2,909,583	+				+0.4
2,909,583	+				+0.5
2,909,583	+				-2.1
2,909,588	-				+0.6
2,909,601	-				+0.8
2,909,641	+		GFF2853	0.12	+0.8
2,909,641	+		GFF2853	0.12	+0.1
2,909,649	-		GFF2853	0.13	-0.4
2,909,649	-		GFF2853	0.13	-0.6
2,909,649	-		GFF2853	0.13	+0.5
2,909,649	-		GFF2853	0.13	-2.1
2,909,666	-		GFF2853	0.14	-0.5
2,909,666	-		GFF2853	0.14	-0.2
2,909,731	+		GFF2853	0.18	+1.5
2,909,738	-		GFF2853	0.19	-0.0
2,909,738	-		GFF2853	0.19	+0.5
2,909,780	-		GFF2853	0.22	-0.2
2,909,855	+		GFF2853	0.27	-0.1
2,909,855	+		GFF2853	0.27	-1.4
2,909,855	+		GFF2853	0.27	-1.3
2,909,855	+		GFF2853	0.27	+0.4
2,909,855	+		GFF2853	0.27	-0.3
2,909,855	+		GFF2853	0.27	-0.3
2,909,857	-		GFF2853	0.27	-1.8
2,909,863	-		GFF2853	0.27	+0.1
2,909,863	-		GFF2853	0.27	-0.3
2,909,863	-		GFF2853	0.27	+1.0
2,909,866	+		GFF2853	0.27	-0.4
2,909,869	-		GFF2853	0.28	-0.6
2,909,872	+		GFF2853	0.28	-0.2
2,909,876	+		GFF2853	0.28	+0.2
2,909,880	-		GFF2853	0.28	-0.9
2,909,880	-		GFF2853	0.28	-0.3
2,909,880	-		GFF2853	0.28	-0.6
2,909,901	+		GFF2853	0.30	-1.5
2,909,901	+		GFF2853	0.30	+0.1
2,909,901	+		GFF2853	0.30	-0.7
2,909,901	+		GFF2853	0.30	-0.0
2,909,906	+		GFF2853	0.30	-0.6
2,909,906	+		GFF2853	0.30	+0.3
2,909,909	-		GFF2853	0.30	+0.2
2,909,914	-		GFF2853	0.30	-0.2
2,909,915	-		GFF2853	0.31	-0.2
2,909,922	+		GFF2853	0.31	+0.3
2,909,922	+		GFF2853	0.31	+1.3
2,909,922	+		GFF2853	0.31	+1.0
2,909,922	+		GFF2853	0.31	-0.2
2,909,922	+		GFF2853	0.31	+0.0
2,909,922	+		GFF2853	0.31	+0.6
2,909,924	-		GFF2853	0.31	-0.3
2,909,930	-		GFF2853	0.32	-0.0
2,909,955	-		GFF2853	0.33	+1.1
2,909,968	+		GFF2853	0.34	+0.9
2,909,969	-		GFF2853	0.34	-1.2
2,909,982	+		GFF2853	0.35	+0.2
2,909,982	+		GFF2853	0.35	+1.0
2,909,982	+		GFF2853	0.35	-2.6
2,909,990	-		GFF2853	0.36	-0.4
2,909,990	-		GFF2853	0.36	-0.0
2,910,019	-		GFF2853	0.37	-0.7
2,910,038	-		GFF2853	0.39	-0.1
2,910,043	+		GFF2853	0.39	-0.0
2,910,043	+		GFF2853	0.39	+0.3
2,910,043	+		GFF2853	0.39	+1.5
2,910,043	+		GFF2853	0.39	+0.4
2,910,043	+		GFF2853	0.39	-0.8
2,910,050	+		GFF2853	0.39	+0.2
2,910,050	+		GFF2853	0.39	-0.7
2,910,050	+		GFF2853	0.39	-0.1
2,910,051	-		GFF2853	0.40	+0.2
2,910,051	-		GFF2853	0.40	-0.7
2,910,058	-		GFF2853	0.40	+0.3
2,910,058	-		GFF2853	0.40	+1.1
2,910,058	-		GFF2853	0.40	-1.8
2,910,099	-		GFF2853	0.43	+0.0
2,910,101	-		GFF2853	0.43	-0.8
2,910,121	-		GFF2853	0.44	+0.4
2,910,122	-		GFF2853	0.44	-0.9
2,910,125	+		GFF2853	0.44	+0.8
2,910,134	-		GFF2853	0.45	-1.1
2,910,137	+		GFF2853	0.45	+0.4
2,910,181	-		GFF2853	0.48	+1.2
2,910,199	-		GFF2853	0.49	-2.6
2,910,203	+		GFF2853	0.50	-0.1
2,910,206	-		GFF2853	0.50	-1.0
2,910,229	+		GFF2853	0.51	+0.2
2,910,237	-		GFF2853	0.52	-0.6
2,910,237	-		GFF2853	0.52	+0.4
2,910,246	+		GFF2853	0.52	-0.6
2,910,251	+		GFF2853	0.53	+0.2
2,910,257	+		GFF2853	0.53	+0.4
2,910,322	-		GFF2853	0.58	-1.2
2,910,327	-		GFF2853	0.58	-1.9
2,910,371	+		GFF2853	0.61	+1.2
2,910,371	+		GFF2853	0.61	+0.4
2,910,371	+		GFF2853	0.61	-1.1
2,910,379	+		GFF2853	0.61	-1.4
2,910,379	+		GFF2853	0.61	-1.5
2,910,379	+		GFF2853	0.61	-0.2
2,910,379	+		GFF2853	0.61	+0.4
2,910,379	+		GFF2853	0.61	-0.8
2,910,379	-		GFF2853	0.61	-0.9
2,910,380	-		GFF2853	0.61	-1.3
2,910,384	+		GFF2853	0.62	+1.0
2,910,384	+		GFF2853	0.62	+1.2
2,910,387	-		GFF2853	0.62	-0.3
2,910,387	-		GFF2853	0.62	-0.9
2,910,387	-		GFF2853	0.62	-0.8
2,910,387	-		GFF2853	0.62	-2.7
2,910,387	-		GFF2853	0.62	+0.5
2,910,387	-		GFF2853	0.62	-0.2
2,910,387	-		GFF2853	0.62	+0.7
2,910,387	-		GFF2853	0.62	-1.1
2,910,387	-		GFF2853	0.62	-0.6
2,910,387	-		GFF2853	0.62	-0.9
2,910,387	-		GFF2853	0.62	-0.8
2,910,387	-		GFF2853	0.62	+1.4
2,910,424	-		GFF2853	0.64	-0.7
2,910,442	-		GFF2853	0.65	-2.8
2,910,445	+		GFF2853	0.66	-0.2
2,910,463	-		GFF2853	0.67	+0.3
2,910,464	+		GFF2853	0.67	+0.5
2,910,478	-		GFF2853	0.68	+0.5
2,910,488	+		GFF2853	0.69	-1.6
2,910,489	-		GFF2853	0.69	-0.1
2,910,533	-		GFF2853	0.72	-2.3
2,910,576	-		GFF2853	0.74	-0.3
2,910,585	+		GFF2853	0.75	+0.0
2,910,587	+		GFF2853	0.75	-0.8
2,910,602	+		GFF2853	0.76	-2.0
2,910,602	+		GFF2853	0.76	-1.0
2,910,602	+		GFF2853	0.76	-1.2
2,910,610	-		GFF2853	0.77	-0.2
2,910,613	+		GFF2853	0.77	-0.0
2,910,618	+		GFF2853	0.77	-1.3
2,910,623	+		GFF2853	0.77	-0.9
2,910,626	-		GFF2853	0.78	+0.3
2,910,631	-		GFF2853	0.78	+0.8
2,910,645	+		GFF2853	0.79	-1.5
2,910,672	+		GFF2853	0.81	+1.1
2,910,680	-		GFF2853	0.81	+1.1
2,910,680	-		GFF2853	0.81	+0.5
2,910,680	-		GFF2853	0.81	-3.3
2,910,686	-		GFF2853	0.82	-0.5
2,910,687	-		GFF2853	0.82	-1.0
2,910,713	+		GFF2853	0.83	-0.8
2,910,718	-		GFF2853	0.84	-0.3
2,910,727	+		GFF2853	0.84	-1.5
2,910,732	+		GFF2853	0.85	+0.0
2,910,733	+		GFF2853	0.85	-0.6
2,910,741	+		GFF2853	0.85	+0.4
2,910,759	+		GFF2853	0.86	+0.1
2,910,781	-		GFF2853	0.88	-0.3
2,910,797	+		GFF2853	0.89	-0.3
2,910,803	-		GFF2853	0.89	+0.2
2,910,826	+				-2.1
2,910,826	+				-1.7
2,910,826	+				+1.5
2,910,826	+				-0.7
2,910,852	+				-1.0
2,910,852	+				-0.3
2,910,852	+				-0.2
2,910,852	+				-0.3
2,910,852	+				-1.1
2,910,852	+				-0.0
2,910,852	+				+0.3
2,910,855	-				+0.0
2,910,857	+				-0.3
2,910,860	-				+0.8
2,910,860	-				-0.0
2,910,860	-				-0.3
2,910,860	-				+0.1
2,910,860	-				+0.4
2,910,865	-				+1.0
2,910,870	-				-0.6
2,910,884	-				-0.5
2,910,886	-				-0.2
2,910,886	-				+0.8
2,910,895	+				-2.0
2,910,903	-				-1.0
2,910,903	-				-0.1
2,910,909	+				-0.7
2,910,942	+				-1.4
2,910,955	+				-0.3
2,910,974	+				-1.7
2,910,977	-				+0.4
2,910,979	+				-1.2
2,910,979	+				-0.3
2,910,981	-				+0.4
2,910,996	+				-1.5
2,911,006	+		GFF2854	0.11	+0.0
2,911,006	+		GFF2854	0.11	-1.3
2,911,012	+		GFF2854	0.12	-1.2
2,911,012	+		GFF2854	0.12	-1.5
2,911,014	-		GFF2854	0.13	-2.1
2,911,018	+		GFF2854	0.14	+0.6
2,911,026	+		GFF2854	0.16	-1.4
2,911,026	+		GFF2854	0.16	-0.1
2,911,039	+		GFF2854	0.19	+0.2
2,911,085	-		GFF2854	0.29	+0.3
2,911,095	+		GFF2854	0.32	-0.7
2,911,100	+		GFF2854	0.33	-0.3
2,911,126	+		GFF2854	0.39	-0.3
2,911,133	+		GFF2854	0.41	-0.7
2,911,133	+		GFF2854	0.41	-2.8
2,911,134	-		GFF2854	0.41	+1.3
2,911,134	-		GFF2854	0.41	-0.2
2,911,141	-		GFF2854	0.42	-0.6
2,911,164	+		GFF2854	0.48	-0.4
2,911,188	+		GFF2854	0.53	-0.5
2,911,189	+		GFF2854	0.54	-0.2
2,911,189	+		GFF2854	0.54	-1.6
2,911,189	+		GFF2854	0.54	+1.4
2,911,195	-		GFF2854	0.55	-0.3
2,911,197	-		GFF2854	0.55	-2.1
2,911,197	-		GFF2854	0.55	-0.3
2,911,197	-		GFF2854	0.55	+0.0
2,911,197	-		GFF2854	0.55	+0.2
2,911,197	-		GFF2854	0.55	-1.1
2,911,197	-		GFF2854	0.55	-1.6
2,911,197	-		GFF2854	0.55	+0.9
2,911,197	-		GFF2854	0.55	-0.6
2,911,202	-		GFF2854	0.57	+0.7
2,911,245	+		GFF2854	0.67	-0.9
2,911,261	+		GFF2854	0.70	+0.6
2,911,261	+		GFF2854	0.70	-0.1
2,911,264	-		GFF2854	0.71	+0.7
2,911,279	-		GFF2854	0.75	-1.0
2,911,280	+		GFF2854	0.75	-0.1
2,911,280	+		GFF2854	0.75	+1.4
2,911,295	+		GFF2854	0.78	-1.2
2,911,295	+		GFF2854	0.78	+0.4
2,911,295	+		GFF2854	0.78	-0.1
2,911,319	-		GFF2854	0.84	-0.7
2,911,325	+		GFF2854	0.85	-1.0
2,911,325	+		GFF2854	0.85	-0.2
2,911,330	+		GFF2854	0.86	+0.8
2,911,330	+		GFF2854	0.86	-0.9
2,911,333	-		GFF2854	0.87	-0.5
2,911,338	-		GFF2854	0.88	-1.9
2,911,338	-		GFF2854	0.88	-0.9
2,911,397	+				+0.3
2,911,397	+				+0.4
2,911,397	+				+0.9
2,911,403	+				-0.3
2,911,405	-				+0.5
2,911,405	-				-0.8
2,911,405	-				-0.5
2,911,408	+				-0.2
2,911,421	-				-0.8
2,911,421	-				-1.0
2,911,423	+				+1.5
2,911,423	+				-2.2
2,911,449	+				+0.1
2,911,464	-				-0.6
2,911,509	+		GFF2855	0.14	-0.3
2,911,514	+		GFF2855	0.14	+0.1
2,911,514	+		GFF2855	0.14	-0.8
2,911,514	+		GFF2855	0.14	-0.4
2,911,514	+		GFF2855	0.14	-0.7
2,911,520	+		GFF2855	0.15	-0.1
2,911,522	-		GFF2855	0.15	+0.4
2,911,543	+		GFF2855	0.17	+0.0
2,911,550	+		GFF2855	0.18	+1.9
2,911,550	+		GFF2855	0.18	-0.7
2,911,550	+		GFF2855	0.18	-0.7
2,911,550	+		GFF2855	0.18	-1.3
2,911,558	-		GFF2855	0.19	-0.4
2,911,558	-		GFF2855	0.19	-0.1
2,911,560	+		GFF2855	0.19	+1.4
2,911,562	+		GFF2855	0.20	-1.1
2,911,567	+		GFF2855	0.20	-0.7
2,911,567	+		GFF2855	0.20	+0.2
2,911,568	-		GFF2855	0.20	-1.1
2,911,570	-		GFF2855	0.20	-0.1
2,911,570	-		GFF2855	0.20	-1.6
2,911,580	-		GFF2855	0.22	+0.5
2,911,618	-		GFF2855	0.26	-0.1
2,911,626	-		GFF2855	0.27	-1.1
2,911,627	-		GFF2855	0.27	-0.1
2,911,662	-		GFF2855	0.31	-0.8
2,911,704	-		GFF2855	0.35	-2.0
2,911,721	+		GFF2855	0.37	+0.1
2,911,721	+		GFF2855	0.37	-2.1
2,911,721	+		GFF2855	0.37	-0.4
2,911,729	-		GFF2855	0.38	-0.1
2,911,766	+		GFF2855	0.42	-1.0
2,911,774	+		GFF2855	0.43	-2.9
2,911,779	-		GFF2855	0.43	+0.5
2,911,780	+		GFF2855	0.44	-0.0
2,911,780	+		GFF2855	0.44	-0.6
2,911,780	+		GFF2855	0.44	-1.1
2,911,780	+		GFF2855	0.44	-0.5
2,911,780	+		GFF2855	0.44	-0.4
2,911,780	+		GFF2855	0.44	+0.9
2,911,780	-		GFF2855	0.44	-1.7
2,911,788	-		GFF2855	0.44	-1.0
2,911,788	-		GFF2855	0.44	+0.0
2,911,788	-		GFF2855	0.44	-0.3
2,911,788	-		GFF2855	0.44	-0.3
2,911,788	-		GFF2855	0.44	-1.6
2,911,788	-		GFF2855	0.44	+0.7
2,911,833	+		GFF2855	0.49	+0.2
2,911,835	+		GFF2855	0.50	+0.1
2,911,841	-		GFF2855	0.50	+0.6
2,911,844	+		GFF2855	0.51	-1.0
2,911,849	+		GFF2855	0.51	-1.9
2,911,849	+		GFF2855	0.51	+0.2
2,911,854	+		GFF2855	0.52	-1.3
2,911,854	+		GFF2855	0.52	-1.2
2,911,857	-		GFF2855	0.52	-0.2
2,911,859	+		GFF2855	0.52	+0.4
2,911,861	-		GFF2855	0.52	-0.1
2,911,888	-		GFF2855	0.55	+0.6
2,911,903	+		GFF2855	0.57	-1.5
2,911,903	+		GFF2855	0.57	+0.4
2,911,911	-		GFF2855	0.58	+0.2
2,911,911	-		GFF2855	0.58	-0.0
2,911,926	-		GFF2855	0.60	-0.8
2,911,934	+		GFF2855	0.61	-0.3