Strain Fitness in Sphingobium sp. HT1-2 around GFF2848

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,902,657	+				+1.4
2,902,694	+				-1.3
2,902,702	-				-1.3
2,902,702	-				+0.7
2,902,742	+				+0.7
2,902,742	+				+1.2
2,902,742	+				-0.0
2,902,744	-				-0.5
2,902,750	-				-1.3
2,902,750	-				-0.2
2,902,750	-				-1.2
2,902,750	-				+0.6
2,902,750	-				-1.4
2,902,756	-				-0.8
2,902,756	-				-1.1
2,902,762	-				-0.8
2,902,766	-				-0.1
2,902,795	+		GFF2847	0.13	+1.3
2,902,796	+		GFF2847	0.13	+0.5
2,902,796	+		GFF2847	0.13	-0.8
2,902,804	-		GFF2847	0.14	-0.7
2,902,804	-		GFF2847	0.14	-0.8
2,902,804	-		GFF2847	0.14	-0.4
2,902,804	-		GFF2847	0.14	-1.1
2,902,804	-		GFF2847	0.14	-0.8
2,902,804	-		GFF2847	0.14	+1.0
2,902,804	-		GFF2847	0.14	-1.0
2,902,804	-		GFF2847	0.14	-0.3
2,902,806	+		GFF2847	0.14	+0.2
2,902,807	+		GFF2847	0.14	+0.3
2,902,811	-		GFF2847	0.15	-0.8
2,902,817	+		GFF2847	0.15	+0.0
2,902,823	+		GFF2847	0.16	+0.7
2,902,823	+		GFF2847	0.16	-0.7
2,902,823	+		GFF2847	0.16	-1.7
2,902,823	+		GFF2847	0.16	+0.2
2,902,825	-		GFF2847	0.16	+0.8
2,902,831	-		GFF2847	0.17	+0.1
2,902,831	-		GFF2847	0.17	-2.3
2,902,831	-		GFF2847	0.17	-0.3
2,902,831	-		GFF2847	0.17	+0.3
2,902,844	+		GFF2847	0.18	-2.4
2,902,850	-		GFF2847	0.19	-0.0
2,902,873	+		GFF2847	0.21	-1.3
2,902,873	+		GFF2847	0.21	+0.0
2,902,890	+		GFF2847	0.23	-1.4
2,902,890	+		GFF2847	0.23	-1.8
2,902,890	+		GFF2847	0.23	-0.3
2,902,890	+		GFF2847	0.23	+1.4
2,902,891	+		GFF2847	0.23	-0.0
2,902,898	-		GFF2847	0.24	-1.3
2,902,909	-		GFF2847	0.25	-0.4
2,902,916	-		GFF2847	0.26	-0.8
2,902,921	-		GFF2847	0.26	-0.1
2,902,926	+		GFF2847	0.27	-0.1
2,902,929	-		GFF2847	0.27	-1.5
2,902,934	-		GFF2847	0.28	+0.8
2,902,945	+		GFF2847	0.29	-1.3
2,902,953	-		GFF2847	0.30	-0.3
2,902,961	+		GFF2847	0.31	-1.5
2,902,961	+		GFF2847	0.31	-1.5
2,902,961	+		GFF2847	0.31	+0.2
2,902,961	+		GFF2847	0.31	+0.1
2,902,962	-		GFF2847	0.31	-0.3
2,902,967	+		GFF2847	0.31	+0.9
2,902,969	-		GFF2847	0.32	-1.7
2,902,998	+		GFF2847	0.35	+0.4
2,902,998	+		GFF2847	0.35	-1.3
2,902,998	+		GFF2847	0.35	-0.4
2,903,000	+		GFF2847	0.35	+0.7
2,903,054	-		GFF2847	0.41	-1.2
2,903,059	+		GFF2847	0.41	+0.2
2,903,059	+		GFF2847	0.41	+1.2
2,903,067	-		GFF2847	0.42	+1.3
2,903,076	+		GFF2847	0.43	+0.5
2,903,079	-		GFF2847	0.43	-1.5
2,903,127	+		GFF2847	0.49	-0.1
2,903,135	-		GFF2847	0.49	+1.6
2,903,135	-		GFF2847	0.49	-0.0
2,903,135	-		GFF2847	0.49	-0.1
2,903,135	-		GFF2847	0.49	-0.4
2,903,162	-		GFF2847	0.52	-0.5
2,903,181	+		GFF2847	0.54	-0.2
2,903,181	+		GFF2847	0.54	+0.9
2,903,181	+		GFF2847	0.54	-2.1
2,903,181	+		GFF2847	0.54	-0.2
2,903,182	-		GFF2847	0.55	-0.5
2,903,182	-		GFF2847	0.55	-0.8
2,903,182	-		GFF2847	0.55	+0.6
2,903,189	-		GFF2847	0.55	-1.6
2,903,189	-		GFF2847	0.55	-1.8
2,903,189	-		GFF2847	0.55	-1.9
2,903,189	-		GFF2847	0.55	-2.0
2,903,196	+		GFF2847	0.56	+0.7
2,903,196	+		GFF2847	0.56	+0.0
2,903,196	+		GFF2847	0.56	+0.2
2,903,204	-		GFF2847	0.57	+0.4
2,903,224	-		GFF2847	0.59	-2.1
2,903,280	-		GFF2847	0.65	-0.5
2,903,309	-		GFF2847	0.68	+0.7
2,903,347	+		GFF2847	0.72	-1.6
2,903,395	+		GFF2847	0.77	-2.0
2,903,402	+		GFF2847	0.78	-0.5
2,903,402	+		GFF2847	0.78	-0.3
2,903,402	+		GFF2847	0.78	-0.8
2,903,402	+		GFF2847	0.78	+0.2
2,903,402	+		GFF2847	0.78	+0.0
2,903,402	+		GFF2847	0.78	+0.2
2,903,409	-		GFF2847	0.79	+0.7
2,903,409	-		GFF2847	0.79	-0.0
2,903,410	-		GFF2847	0.79	+0.0
2,903,410	-		GFF2847	0.79	-1.0
2,903,410	-		GFF2847	0.79	-0.9
2,903,410	-		GFF2847	0.79	-3.1
2,903,410	-		GFF2847	0.79	-0.8
2,903,415	-		GFF2847	0.80	-1.9
2,903,435	-		GFF2847	0.82	-0.3
2,903,471	+		GFF2847	0.86	+1.3
2,903,487	+		GFF2847	0.87	+0.2
2,903,495	-		GFF2847	0.88	+0.6
2,903,495	-		GFF2847	0.88	-1.2
2,903,556	+				-0.1
2,903,561	+				-0.3
2,903,564	-				+0.2
2,903,566	+				-2.0
2,903,566	+				-1.8
2,903,566	+				-1.3
2,903,566	+				+0.3
2,903,566	+				+0.4
2,903,566	+				-1.2
2,903,569	-				-0.3
2,903,569	-				-0.5
2,903,574	-				-0.6
2,903,574	-				+1.0
2,903,574	-				-0.2
2,903,574	-				-0.2
2,903,574	-				+0.4
2,903,577	+				+0.2
2,903,586	-				+1.0
2,903,591	-				-0.9
2,903,593	-				-1.5
2,903,593	-				-0.1
2,903,595	+				-1.7
2,903,599	+				+0.5
2,903,613	+				-0.9
2,903,634	+				+0.8
2,903,634	+				-0.3
2,903,635	+				-0.5
2,903,635	+				-0.1
2,903,635	+				-0.6
2,903,639	+				-0.1
2,903,642	-				+0.9
2,903,643	-				-0.1
2,903,643	-				-3.0
2,903,643	-				-0.1
2,903,643	-				+0.8
2,903,643	-				+1.2
2,903,643	-				-0.9
2,903,667	+				-0.8
2,903,675	-				-0.8
2,903,690	+				+0.0
2,903,696	+				-0.6
2,903,698	-				-0.4
2,903,698	-				+1.4
2,903,698	-				+0.2
2,903,698	-				-0.0
2,903,698	-				+0.2
2,903,698	-				+0.2
2,903,698	-				-1.0
2,903,698	-				+1.0
2,903,709	-				+0.6
2,903,758	-				+0.0
2,903,785	-		GFF2848	0.12	-0.2
2,903,806	-		GFF2848	0.14	+0.5
2,903,837	-		GFF2848	0.17	+0.5
2,903,851	+		GFF2848	0.18	+0.7
2,903,851	+		GFF2848	0.18	-1.2
2,903,851	+		GFF2848	0.18	-1.0
2,903,851	+		GFF2848	0.18	-0.2
2,903,851	+		GFF2848	0.18	-1.1
2,903,851	+		GFF2848	0.18	-1.3
2,903,859	-		GFF2848	0.19	+1.2
2,903,859	-		GFF2848	0.19	-0.6
2,903,859	-		GFF2848	0.19	+0.0
2,903,859	-		GFF2848	0.19	-0.6
2,903,859	-		GFF2848	0.19	+0.2
2,903,859	-		GFF2848	0.19	-0.1
2,903,859	-		GFF2848	0.19	-2.1
2,903,859	-		GFF2848	0.19	-1.2
2,903,859	-		GFF2848	0.19	-0.5
2,903,859	-		GFF2848	0.19	+0.3
2,903,882	+		GFF2848	0.21	+0.7
2,903,882	+		GFF2848	0.21	+2.0
2,903,882	+		GFF2848	0.21	+0.4
2,903,890	-		GFF2848	0.21	-0.9
2,903,890	-		GFF2848	0.21	+0.7
2,903,911	-		GFF2848	0.23	+0.4
2,903,918	+		GFF2848	0.24	-0.1
2,903,918	+		GFF2848	0.24	+0.6
2,903,921	-		GFF2848	0.24	+0.4
2,903,949	-		GFF2848	0.27	-2.1
2,904,008	+		GFF2848	0.32	+0.3
2,904,008	+		GFF2848	0.32	-0.3
2,904,008	+		GFF2848	0.32	-0.7
2,904,008	+		GFF2848	0.32	+0.5
2,904,008	+		GFF2848	0.32	-0.9
2,904,011	-		GFF2848	0.33	-0.9
2,904,016	-		GFF2848	0.33	+0.3
2,904,016	-		GFF2848	0.33	-1.7
2,904,016	-		GFF2848	0.33	+1.7
2,904,016	-		GFF2848	0.33	-3.0
2,904,016	-		GFF2848	0.33	-1.2
2,904,016	-		GFF2848	0.33	+0.1
2,904,021	-		GFF2848	0.34	-0.1
2,904,038	-		GFF2848	0.35	-0.4
2,904,058	-		GFF2848	0.37	-0.5
2,904,059	-		GFF2848	0.37	-0.9
2,904,061	-		GFF2848	0.37	-0.9
2,904,101	+		GFF2848	0.41	-1.3
2,904,111	+		GFF2848	0.42	-0.2
2,904,111	+		GFF2848	0.42	+1.2
2,904,117	+		GFF2848	0.42	-0.4
2,904,119	-		GFF2848	0.43	+0.1
2,904,119	-		GFF2848	0.43	-2.2
2,904,122	+		GFF2848	0.43	+0.1
2,904,122	+		GFF2848	0.43	+0.5
2,904,130	-		GFF2848	0.44	-0.7
2,904,130	-		GFF2848	0.44	-0.8
2,904,130	-		GFF2848	0.44	+0.2
2,904,140	-		GFF2848	0.44	+0.5
2,904,154	+		GFF2848	0.46	-0.9
2,904,159	+		GFF2848	0.46	+0.0
2,904,159	+		GFF2848	0.46	-0.9
2,904,159	+		GFF2848	0.46	-1.4
2,904,166	-		GFF2848	0.47	+0.6
2,904,179	+		GFF2848	0.48	+0.3
2,904,202	+		GFF2848	0.50	-1.8
2,904,202	+		GFF2848	0.50	+0.1
2,904,202	+		GFF2848	0.50	-0.3
2,904,202	+		GFF2848	0.50	-0.4
2,904,202	+		GFF2848	0.50	-0.3
2,904,202	+		GFF2848	0.50	-0.9
2,904,210	-		GFF2848	0.51	-1.2
2,904,210	-		GFF2848	0.51	-1.6
2,904,210	-		GFF2848	0.51	-1.1
2,904,210	-		GFF2848	0.51	-0.9
2,904,210	-		GFF2848	0.51	-0.3
2,904,210	-		GFF2848	0.51	+0.9
2,904,213	+		GFF2848	0.51	+0.4
2,904,217	-		GFF2848	0.52	-1.0
2,904,235	+		GFF2848	0.53	-1.6
2,904,235	+		GFF2848	0.53	-0.6
2,904,235	+		GFF2848	0.53	+0.2
2,904,235	+		GFF2848	0.53	+0.6
2,904,235	+		GFF2848	0.53	-0.1
2,904,235	+		GFF2848	0.53	-0.5
2,904,235	+		GFF2848	0.53	+0.2
2,904,235	+		GFF2848	0.53	+0.8
2,904,235	+		GFF2848	0.53	-2.3
2,904,235	+		GFF2848	0.53	-0.8
2,904,235	+		GFF2848	0.53	-1.4
2,904,235	+		GFF2848	0.53	-0.5
2,904,238	+		GFF2848	0.53	-0.7
2,904,243	-		GFF2848	0.54	-0.9
2,904,243	-		GFF2848	0.54	-1.1
2,904,243	-		GFF2848	0.54	-1.5
2,904,243	-		GFF2848	0.54	-1.9
2,904,243	-		GFF2848	0.54	-1.2
2,904,243	-		GFF2848	0.54	-0.1
2,904,243	-		GFF2848	0.54	-2.6
2,904,243	-		GFF2848	0.54	-0.9
2,904,243	-		GFF2848	0.54	-0.8
2,904,243	-		GFF2848	0.54	+1.2
2,904,243	-		GFF2848	0.54	-0.6
2,904,258	+		GFF2848	0.55	+0.9
2,904,266	-		GFF2848	0.56	-0.5
2,904,302	-		GFF2848	0.59	+0.2
2,904,316	+		GFF2848	0.61	+0.8
2,904,316	+		GFF2848	0.61	+0.6
2,904,316	+		GFF2848	0.61	-0.6
2,904,324	-		GFF2848	0.61	-0.8
2,904,324	-		GFF2848	0.61	-0.3
2,904,339	+		GFF2848	0.63	+0.7
2,904,359	+		GFF2848	0.65	-1.2
2,904,374	+		GFF2848	0.66	-0.1
2,904,374	+		GFF2848	0.66	-2.1
2,904,374	+		GFF2848	0.66	-2.4
2,904,374	+		GFF2848	0.66	-0.8
2,904,374	+		GFF2848	0.66	+0.3
2,904,374	+		GFF2848	0.66	+0.1
2,904,374	+		GFF2848	0.66	-1.6
2,904,374	+		GFF2848	0.66	+1.1
2,904,374	+		GFF2848	0.66	-0.0
2,904,379	+		GFF2848	0.66	-0.3
2,904,382	-		GFF2848	0.67	-0.8
2,904,382	-		GFF2848	0.67	-0.7
2,904,382	-		GFF2848	0.67	-1.5
2,904,382	-		GFF2848	0.67	-0.6
2,904,382	-		GFF2848	0.67	-0.3
2,904,382	-		GFF2848	0.67	+0.0
2,904,382	-		GFF2848	0.67	-1.9
2,904,391	+		GFF2848	0.67	+0.1
2,904,392	+		GFF2848	0.68	-0.5
2,904,392	+		GFF2848	0.68	-0.9
2,904,392	+		GFF2848	0.68	-0.1
2,904,399	-		GFF2848	0.68	-0.8
2,904,406	+		GFF2848	0.69	+0.4
2,904,436	+		GFF2848	0.72	+0.2
2,904,451	-		GFF2848	0.73	-1.2
2,904,477	+		GFF2848	0.75	+0.8
2,904,487	+		GFF2848	0.76	-1.0
2,904,487	+		GFF2848	0.76	-0.6
2,904,487	+		GFF2848	0.76	-1.4
2,904,487	+		GFF2848	0.76	+0.2
2,904,487	+		GFF2848	0.76	+0.2
2,904,487	+		GFF2848	0.76	-0.4
2,904,487	+		GFF2848	0.76	-1.6
2,904,487	+		GFF2848	0.76	-1.2
2,904,487	+		GFF2848	0.76	+0.1
2,904,487	+		GFF2848	0.76	-1.0
2,904,487	+		GFF2848	0.76	-0.6
2,904,487	+		GFF2848	0.76	-1.5
2,904,487	+		GFF2848	0.76	-1.3
2,904,487	+		GFF2848	0.76	-0.6
2,904,487	+		GFF2848	0.76	-0.5
2,904,487	+		GFF2848	0.76	-0.9
2,904,487	+		GFF2848	0.76	-0.4
2,904,487	+		GFF2848	0.76	-1.6
2,904,487	+		GFF2848	0.76	+1.2
2,904,487	+		GFF2848	0.76	-0.3
2,904,487	+		GFF2848	0.76	+0.6
2,904,487	+		GFF2848	0.76	+0.2
2,904,487	+		GFF2848	0.76	-0.6
2,904,487	+		GFF2848	0.76	+0.1
2,904,487	+		GFF2848	0.76	+0.5
2,904,487	+		GFF2848	0.76	-0.3
2,904,487	+		GFF2848	0.76	-0.1
2,904,487	+		GFF2848	0.76	-1.8
2,904,487	+		GFF2848	0.76	-0.3
2,904,487	+		GFF2848	0.76	+0.2
2,904,487	+		GFF2848	0.76	+0.8
2,904,487	+		GFF2848	0.76	+0.4
2,904,487	+		GFF2848	0.76	-0.3
2,904,487	+		GFF2848	0.76	-0.3
2,904,495	-		GFF2848	0.77	-0.2
2,904,495	-		GFF2848	0.77	+1.0
2,904,495	-		GFF2848	0.77	-1.3
2,904,495	-		GFF2848	0.77	-0.7
2,904,495	-		GFF2848	0.77	-1.7
2,904,495	-		GFF2848	0.77	-1.7
2,904,495	-		GFF2848	0.77	+0.9
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