Strain Fitness in Sphingobium sp. HT1-2 around GFF2845

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,899,008	+		GFF2844	0.65	-0.3
2,899,016	-		GFF2844	0.65	+0.8
2,899,043	-		GFF2844	0.66	+0.5
2,899,050	-		GFF2844	0.66	-0.6
2,899,052	+		GFF2844	0.67	-0.5
2,899,060	+		GFF2844	0.67	+1.0
2,899,060	-		GFF2844	0.67	+0.2
2,899,062	-		GFF2844	0.67	-0.2
2,899,071	+		GFF2844	0.67	-0.6
2,899,071	+		GFF2844	0.67	-0.6
2,899,079	-		GFF2844	0.68	+0.2
2,899,084	-		GFF2844	0.68	-0.3
2,899,090	-		GFF2844	0.68	+0.6
2,899,097	+		GFF2844	0.68	-0.1
2,899,121	+		GFF2844	0.69	-0.5
2,899,121	+		GFF2844	0.69	-0.7
2,899,142	+		GFF2844	0.70	-0.1
2,899,174	-		GFF2844	0.71	-0.8
2,899,192	+		GFF2844	0.72	-1.1
2,899,206	+		GFF2844	0.72	+0.2
2,899,208	-		GFF2844	0.72	+0.3
2,899,288	+		GFF2844	0.75	+0.0
2,899,297	+		GFF2844	0.76	-1.6
2,899,297	+		GFF2844	0.76	-0.6
2,899,301	+		GFF2844	0.76	-0.0
2,899,305	-		GFF2844	0.76	+0.4
2,899,305	-		GFF2844	0.76	-0.9
2,899,318	+		GFF2844	0.77	-0.8
2,899,318	+		GFF2844	0.77	-0.2
2,899,326	-		GFF2844	0.77	-0.5
2,899,341	-		GFF2844	0.77	-0.5
2,899,341	-		GFF2844	0.77	+0.3
2,899,393	-		GFF2844	0.79	+0.7
2,899,393	-		GFF2844	0.79	+0.5
2,899,393	-		GFF2844	0.79	-1.1
2,899,395	+		GFF2844	0.79	+0.4
2,899,403	-		GFF2844	0.80	+0.1
2,899,427	+		GFF2844	0.81	+1.4
2,899,427	+		GFF2844	0.81	-0.7
2,899,427	+		GFF2844	0.81	+0.9
2,899,427	+		GFF2844	0.81	-0.1
2,899,427	+		GFF2844	0.81	-0.2
2,899,435	-		GFF2844	0.81	+1.0
2,899,435	-		GFF2844	0.81	+0.7
2,899,435	-		GFF2844	0.81	-2.6
2,899,435	-		GFF2844	0.81	-0.6
2,899,445	+		GFF2844	0.81	+0.3
2,899,447	-		GFF2844	0.81	+1.2
2,899,447	-		GFF2844	0.81	+1.0
2,899,519	+		GFF2844	0.84	-1.5
2,899,524	+		GFF2844	0.84	+0.5
2,899,532	-		GFF2844	0.85	-0.6
2,899,534	+		GFF2844	0.85	-1.4
2,899,559	+		GFF2844	0.86	+0.7
2,899,564	+		GFF2844	0.86	-0.7
2,899,569	+		GFF2844	0.86	-0.7
2,899,569	+		GFF2844	0.86	-0.9
2,899,572	-		GFF2844	0.86	+0.9
2,899,572	-		GFF2844	0.86	-0.8
2,899,572	-		GFF2844	0.86	+0.2
2,899,572	-		GFF2844	0.86	-1.7
2,899,598	+		GFF2844	0.87	-0.1
2,899,623	+		GFF2844	0.88	+0.7
2,899,623	+		GFF2844	0.88	-0.3
2,899,633	+		GFF2844	0.88	-1.3
2,899,633	+		GFF2844	0.88	+1.0
2,899,641	-		GFF2844	0.89	+0.3
2,899,641	-		GFF2844	0.89	-0.8
2,899,660	+		GFF2844	0.89	-0.1
2,899,663	-		GFF2844	0.89	-0.1
2,899,673	-		GFF2844	0.90	-2.0
2,899,683	+				-1.2
2,899,691	-				+0.1
2,899,699	+				+1.6
2,899,747	-				+0.1
2,899,752	+				+0.4
2,899,785	+				-0.3
2,899,786	+				-0.8
2,899,786	+				-0.8
2,899,793	+				-0.0
2,899,793	+				-0.3
2,899,793	+				+0.5
2,899,793	+				-0.2
2,899,794	-				-0.1
2,899,794	-				-2.9
2,899,794	-				+0.4
2,899,794	-				+0.1
2,899,794	-				-1.1
2,899,801	+				+0.2
2,899,801	-				-0.9
2,899,801	-				-0.7
2,899,801	-				-0.1
2,899,859	+				-1.4
2,899,867	-				-0.1
2,899,877	-				-1.2
2,899,887	-				-0.8
2,899,931	-				+0.1
2,899,934	+				-0.6
2,899,948	+				-1.0
2,899,973	+				+0.3
2,900,025	+				+0.4
2,900,037	+				-0.3
2,900,042	+				-0.1
2,900,083	+				+0.4
2,900,083	+				+1.1
2,900,088	+				+1.1
2,900,096	-		GFF2845	0.10	-0.1
2,900,096	-		GFF2845	0.10	-1.0
2,900,096	-		GFF2845	0.10	-0.1
2,900,112	+		GFF2845	0.12	-1.0
2,900,115	-		GFF2845	0.12	-0.4
2,900,115	-		GFF2845	0.12	-0.1
2,900,115	-		GFF2845	0.12	-0.2
2,900,115	-		GFF2845	0.12	-0.8
2,900,117	+		GFF2845	0.12	-1.1
2,900,120	-		GFF2845	0.13	-0.1
2,900,120	-		GFF2845	0.13	-0.6
2,900,122	+		GFF2845	0.13	+0.8
2,900,125	-		GFF2845	0.13	+0.9
2,900,156	+		GFF2845	0.16	-0.8
2,900,167	+		GFF2845	0.17	-0.6
2,900,180	-		GFF2845	0.19	-0.8
2,900,182	-		GFF2845	0.19	+0.1
2,900,182	-		GFF2845	0.19	-0.8
2,900,193	+		GFF2845	0.20	+0.5
2,900,196	-		GFF2845	0.20	+1.5
2,900,196	-		GFF2845	0.20	+1.1
2,900,203	-		GFF2845	0.21	-0.3
2,900,211	+		GFF2845	0.22	-1.2
2,900,211	+		GFF2845	0.22	-1.1
2,900,211	+		GFF2845	0.22	-0.8
2,900,213	+		GFF2845	0.22	+0.2
2,900,213	+		GFF2845	0.22	-0.7
2,900,219	-		GFF2845	0.22	-0.5
2,900,225	-		GFF2845	0.23	-0.3
2,900,228	+		GFF2845	0.23	-0.9
2,900,228	+		GFF2845	0.23	-0.5
2,900,236	-		GFF2845	0.24	-0.4
2,900,236	-		GFF2845	0.24	-0.4
2,900,236	-		GFF2845	0.24	-0.3
2,900,238	+		GFF2845	0.24	-0.1
2,900,255	+		GFF2845	0.26	-0.6
2,900,258	-		GFF2845	0.26	-1.0
2,900,263	-		GFF2845	0.27	-0.5
2,900,269	-		GFF2845	0.27	+0.1
2,900,282	+		GFF2845	0.28	-0.2
2,900,306	+		GFF2845	0.31	-0.5
2,900,308	+		GFF2845	0.31	-0.5
2,900,314	-		GFF2845	0.32	-1.7
2,900,314	-		GFF2845	0.32	-1.5
2,900,316	+		GFF2845	0.32	-0.3
2,900,328	+		GFF2845	0.33	-2.3
2,900,328	+		GFF2845	0.33	-0.3
2,900,328	+		GFF2845	0.33	+1.0
2,900,328	+		GFF2845	0.33	-1.5
2,900,328	+		GFF2845	0.33	+0.4
2,900,328	+		GFF2845	0.33	-3.1
2,900,328	+		GFF2845	0.33	+0.9
2,900,336	-		GFF2845	0.34	-2.0
2,900,336	-		GFF2845	0.34	+0.5
2,900,341	-		GFF2845	0.34	+0.5
2,900,409	-		GFF2845	0.41	-0.1
2,900,431	+		GFF2845	0.43	-0.6
2,900,432	+		GFF2845	0.43	-0.0
2,900,432	+		GFF2845	0.43	-0.8
2,900,439	-		GFF2845	0.44	-1.7
2,900,440	-		GFF2845	0.44	-1.8
2,900,455	+		GFF2845	0.45	-0.9
2,900,460	+		GFF2845	0.46	+0.4
2,900,467	+		GFF2845	0.46	+0.4
2,900,468	+		GFF2845	0.47	-1.3
2,900,468	+		GFF2845	0.47	-0.1
2,900,475	-		GFF2845	0.47	+0.2
2,900,475	-		GFF2845	0.47	+0.5
2,900,476	-		GFF2845	0.47	-1.2
2,900,476	-		GFF2845	0.47	-1.9
2,900,509	-		GFF2845	0.51	-0.3
2,900,529	+		GFF2845	0.53	-0.3
2,900,529	+		GFF2845	0.53	-0.1
2,900,537	-		GFF2845	0.53	-1.1
2,900,549	+		GFF2845	0.54	+0.3
2,900,557	-		GFF2845	0.55	+0.1
2,900,571	-		GFF2845	0.57	-0.7
2,900,571	-		GFF2845	0.57	+0.1
2,900,571	-		GFF2845	0.57	-1.4
2,900,578	+		GFF2845	0.57	+0.7
2,900,578	+		GFF2845	0.57	-0.2
2,900,600	+		GFF2845	0.59	+0.9
2,900,600	+		GFF2845	0.59	-1.7
2,900,600	+		GFF2845	0.59	-1.3
2,900,600	+		GFF2845	0.59	-0.0
2,900,600	+		GFF2845	0.59	+0.9
2,900,600	+		GFF2845	0.59	-0.7
2,900,603	-		GFF2845	0.60	+0.3
2,900,608	-		GFF2845	0.60	+0.9
2,900,608	-		GFF2845	0.60	+0.9
2,900,608	-		GFF2845	0.60	-0.6
2,900,608	-		GFF2845	0.60	-1.2
2,900,608	-		GFF2845	0.60	-1.2
2,900,610	+		GFF2845	0.60	+1.3
2,900,613	-		GFF2845	0.61	-1.7
2,900,624	+		GFF2845	0.62	+0.5
2,900,624	+		GFF2845	0.62	-2.9
2,900,649	+		GFF2845	0.64	-2.8
2,900,668	+		GFF2845	0.66	+0.9
2,900,679	-		GFF2845	0.67	-2.7
2,900,679	-		GFF2845	0.67	+0.6
2,900,704	+		GFF2845	0.70	-0.7
2,900,709	+		GFF2845	0.70	-2.0
2,900,709	+		GFF2845	0.70	-1.5
2,900,712	-		GFF2845	0.70	-1.7
2,900,717	-		GFF2845	0.71	-0.3
2,900,729	-		GFF2845	0.72	-0.1
2,900,732	+		GFF2845	0.72	+0.5
2,900,733	-		GFF2845	0.72	-0.2
2,900,739	-		GFF2845	0.73	+0.0
2,900,748	+		GFF2845	0.74	+0.6
2,900,827	+		GFF2845	0.82	-0.3
2,900,827	+		GFF2845	0.82	-1.0
2,900,827	+		GFF2845	0.82	-1.4
2,900,827	+		GFF2845	0.82	-0.1
2,900,827	+		GFF2845	0.82	-2.0
2,900,835	-		GFF2845	0.82	-0.5
2,900,835	-		GFF2845	0.82	+0.2
2,900,860	-		GFF2845	0.85	+0.4
2,900,887	-		GFF2845	0.87	+0.9
2,900,902	+		GFF2845	0.89	+1.4
2,900,902	+		GFF2845	0.89	+0.0
2,900,902	+		GFF2845	0.89	-2.3
2,900,907	+		GFF2845	0.89	-0.5
2,900,913	+				+1.3
2,900,921	-				-1.8
2,900,934	-				+0.8
2,900,934	-				-2.2
2,900,948	-				-1.5
2,900,955	-				+0.5
2,900,969	-				-0.8
2,901,008	+				-0.0
2,901,008	+				-0.2
2,901,010	-				-0.8
2,901,016	-				+0.4
2,901,016	-				-0.7
2,901,016	-				+0.5
2,901,016	-				+0.4
2,901,016	-				+0.0
2,901,016	-				+0.9
2,901,016	-				-0.3
2,901,026	-				-0.6
2,901,026	-				+0.1
2,901,026	-				+0.2
2,901,030	-				-0.9
2,901,033	+				-0.7
2,901,059	+				-0.7
2,901,116	-				-0.8
2,901,122	+				-1.5
2,901,126	-				-0.6
2,901,126	-				+0.5
2,901,126	-				-0.1
2,901,128	+				+0.6
2,901,130	-				-1.6
2,901,131	-				+0.1
2,901,149	+				-2.1
2,901,162	+				+0.0
2,901,170	-				-1.8
2,901,170	-				-0.9
2,901,186	+				-0.5
2,901,188	+				-0.1
2,901,188	+				+0.2
2,901,188	+				-0.4
2,901,188	+				-0.5
2,901,188	+				+0.8
2,901,193	+				-1.6
2,901,193	+				-0.9
2,901,193	+				+0.2
2,901,196	-				+0.1
2,901,196	-				-0.0
2,901,196	-				-0.2
2,901,196	-				+0.1
2,901,196	-				-1.3
2,901,196	-				-0.0
2,901,196	-				+0.2
2,901,196	-				-1.3
2,901,196	-				+0.1
2,901,196	-				-0.1
2,901,196	-				-0.7
2,901,201	-				+0.7
2,901,201	-				-1.3
2,901,201	-				-1.6
2,901,201	-				+0.5
2,901,201	-				-0.1
2,901,201	-				-0.8
2,901,223	-				+1.1
2,901,227	-		GFF2846	0.10	-0.8
2,901,236	+		GFF2846	0.11	-0.7
2,901,236	+		GFF2846	0.11	-1.2
2,901,236	+		GFF2846	0.11	+0.6
2,901,236	+		GFF2846	0.11	-1.2
2,901,236	+		GFF2846	0.11	-1.2
2,901,236	+		GFF2846	0.11	-0.0
2,901,236	+		GFF2846	0.11	+0.2
2,901,246	+		GFF2846	0.11	-1.3
2,901,246	+		GFF2846	0.11	+0.8
2,901,259	+		GFF2846	0.12	-0.4
2,901,281	+		GFF2846	0.14	+0.7
2,901,281	+		GFF2846	0.14	+0.8
2,901,297	-		GFF2846	0.15	-0.4
2,901,364	+		GFF2846	0.19	-0.8
2,901,395	-		GFF2846	0.21	+0.1
2,901,395	-		GFF2846	0.21	-0.7
2,901,435	+		GFF2846	0.23	-0.5
2,901,451	+		GFF2846	0.24	+1.1
2,901,451	-		GFF2846	0.24	-0.1
2,901,452	+		GFF2846	0.25	-1.8
2,901,477	-		GFF2846	0.26	+0.1
2,901,484	+		GFF2846	0.27	-0.8
2,901,484	+		GFF2846	0.27	-1.7
2,901,484	+		GFF2846	0.27	+0.6
2,901,484	+		GFF2846	0.27	-0.7
2,901,484	+		GFF2846	0.27	-1.8
2,901,492	-		GFF2846	0.27	-0.8
2,901,492	-		GFF2846	0.27	+0.7
2,901,492	-		GFF2846	0.27	-0.1
2,901,492	-		GFF2846	0.27	-1.5
2,901,505	+		GFF2846	0.28	+0.4
2,901,516	-		GFF2846	0.29	-0.7
2,901,527	+		GFF2846	0.29	+0.5
2,901,528	+		GFF2846	0.29	+0.4
2,901,536	+		GFF2846	0.30	-1.2
2,901,536	-		GFF2846	0.30	+0.4
2,901,556	-		GFF2846	0.31	+0.9
2,901,580	+		GFF2846	0.33	+0.5
2,901,580	+		GFF2846	0.33	-0.8
2,901,580	+		GFF2846	0.33	-1.1
2,901,580	+		GFF2846	0.33	-0.3
2,901,588	-		GFF2846	0.33	+1.8
2,901,588	-		GFF2846	0.33	-1.5
2,901,588	-		GFF2846	0.33	-0.3
2,901,588	-		GFF2846	0.33	-0.7
2,901,588	-		GFF2846	0.33	+0.5
2,901,588	-		GFF2846	0.33	-0.7
2,901,588	-		GFF2846	0.33	-1.5
2,901,606	-		GFF2846	0.34	-1.0
2,901,614	+		GFF2846	0.35	-1.8
2,901,645	+		GFF2846	0.37	-0.9
2,901,650	+		GFF2846	0.37	+0.1
2,901,682	+		GFF2846	0.39	-1.9
2,901,687	+		GFF2846	0.40	-0.6
2,901,695	-		GFF2846	0.40	-0.1
2,901,695	-		GFF2846	0.40	-1.9
2,901,720	+		GFF2846	0.42	-0.8
2,901,720	+		GFF2846	0.42	-0.0
2,901,726	+		GFF2846	0.42	-0.5
2,901,728	-		GFF2846	0.42	-1.0
2,901,728	-		GFF2846	0.42	-0.0
2,901,734	-		GFF2846	0.42	+0.2
2,901,734	-		GFF2846	0.42	-1.3
2,901,734	-		GFF2846	0.42	-0.7
2,901,750	+		GFF2846	0.44	-0.9
2,901,750	+		GFF2846	0.44	+1.0
2,901,764	+		GFF2846	0.44	-1.0
2,901,769	+		GFF2846	0.45	-0.0
2,901,777	-		GFF2846	0.45	-0.4
2,901,781	-		GFF2846	0.45	-0.2
2,901,781	-		GFF2846	0.45	-0.2
2,901,783	+		GFF2846	0.46	-2.2
2,901,798	-		GFF2846	0.47	-2.8
2,901,835	-		GFF2846	0.49	-1.3
2,901,860	-		GFF2846	0.51	+0.2
2,901,887	+		GFF2846	0.52	-1.3
2,901,887	+		GFF2846	0.52	+0.5
2,901,928	-		GFF2846	0.55	+0.0
2,901,951	+		GFF2846	0.56	-0.9
2,901,954	-		GFF2846	0.56	-2.0
2,901,960	-		GFF2846	0.57	-0.1
2,901,964	+		GFF2846	0.57	-0.4
2,901,964	+		GFF2846	0.57	-0.4
2,901,972	-		GFF2846	0.58	-0.8
2,901,972	-		GFF2846	0.58	-1.2
2,901,972	-		GFF2846	0.58	-0.2
2,901,972	-		GFF2846	0.58	-1.3
2,902,000	+		GFF2846	0.59	-0.5