Strain Fitness in Sphingobium sp. HT1-2 around GFF2843

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,894,982	+		GFF2842	0.49	+0.2
2,894,982	+		GFF2842	0.49	-0.8
2,894,984	-		GFF2842	0.49	+0.5
2,894,988	-		GFF2842	0.49	-0.4
2,894,990	-		GFF2842	0.49	-0.2
2,894,990	-		GFF2842	0.49	-0.6
2,894,995	-		GFF2842	0.49	+1.4
2,894,998	-		GFF2842	0.50	-1.7
2,895,001	+		GFF2842	0.50	-1.3
2,895,001	+		GFF2842	0.50	-0.6
2,895,001	-		GFF2842	0.50	+0.3
2,895,009	-		GFF2842	0.50	-2.1
2,895,022	+		GFF2842	0.51	-0.6
2,895,023	+		GFF2842	0.51	+0.9
2,895,028	+		GFF2842	0.52	-0.9
2,895,030	-		GFF2842	0.52	-1.0
2,895,030	-		GFF2842	0.52	-0.4
2,895,030	-		GFF2842	0.52	+0.3
2,895,035	-		GFF2842	0.52	+0.8
2,895,046	-		GFF2842	0.53	+0.1
2,895,047	-		GFF2842	0.53	+0.2
2,895,058	-		GFF2842	0.54	-0.4
2,895,062	+		GFF2842	0.54	-0.3
2,895,062	+		GFF2842	0.54	+0.1
2,895,070	-		GFF2842	0.54	-0.8
2,895,099	-		GFF2842	0.56	-0.8
2,895,106	+		GFF2842	0.57	-1.9
2,895,114	+		GFF2842	0.57	+0.6
2,895,119	+		GFF2842	0.58	-0.2
2,895,119	+		GFF2842	0.58	+1.4
2,895,122	-		GFF2842	0.58	-0.0
2,895,127	-		GFF2842	0.58	-0.1
2,895,127	-		GFF2842	0.58	-0.1
2,895,127	-		GFF2842	0.58	+0.1
2,895,127	-		GFF2842	0.58	-0.2
2,895,127	-		GFF2842	0.58	+0.5
2,895,127	-		GFF2842	0.58	-3.1
2,895,127	-		GFF2842	0.58	+0.4
2,895,137	+		GFF2842	0.59	-0.5
2,895,137	+		GFF2842	0.59	+0.7
2,895,137	+		GFF2842	0.59	+0.2
2,895,145	-		GFF2842	0.59	-1.5
2,895,145	-		GFF2842	0.59	+0.2
2,895,145	-		GFF2842	0.59	-0.6
2,895,150	+		GFF2842	0.60	+0.2
2,895,170	-		GFF2842	0.61	-0.2
2,895,185	+		GFF2842	0.62	-0.2
2,895,193	-		GFF2842	0.63	-0.3
2,895,197	-		GFF2842	0.63	-0.5
2,895,241	+		GFF2842	0.66	-0.8
2,895,245	+		GFF2842	0.66	+0.7
2,895,249	-		GFF2842	0.66	-0.6
2,895,249	-		GFF2842	0.66	+0.4
2,895,253	-		GFF2842	0.67	-1.1
2,895,253	-		GFF2842	0.67	+1.1
2,895,253	-		GFF2842	0.67	+0.7
2,895,294	+		GFF2842	0.69	+0.0
2,895,296	+		GFF2842	0.69	-0.4
2,895,296	+		GFF2842	0.69	-1.9
2,895,302	-		GFF2842	0.70	-0.1
2,895,302	-		GFF2842	0.70	+0.0
2,895,304	-		GFF2842	0.70	+0.8
2,895,304	-		GFF2842	0.70	+0.8
2,895,347	+		GFF2842	0.73	-0.2
2,895,351	+		GFF2842	0.73	-2.5
2,895,355	-		GFF2842	0.73	-0.9
2,895,356	-		GFF2842	0.73	-0.3
2,895,359	-		GFF2842	0.74	-0.1
2,895,370	-		GFF2842	0.74	-0.1
2,895,373	+		GFF2842	0.75	-0.3
2,895,392	+		GFF2842	0.76	-0.6
2,895,400	-		GFF2842	0.76	+0.2
2,895,410	-		GFF2842	0.77	-0.9
2,895,412	+		GFF2842	0.77	-0.2
2,895,415	-		GFF2842	0.77	+0.5
2,895,420	-		GFF2842	0.78	+0.0
2,895,429	+		GFF2842	0.78	-0.3
2,895,438	-		GFF2842	0.79	-1.1
2,895,443	-		GFF2842	0.79	+1.0
2,895,493	-		GFF2842	0.83	-0.1
2,895,493	-		GFF2842	0.83	-0.0
2,895,494	+		GFF2842	0.83	+0.6
2,895,509	+		GFF2842	0.84	-1.0
2,895,530	+		GFF2842	0.85	-0.9
2,895,541	+		GFF2842	0.86	-0.0
2,895,551	+		GFF2842	0.86	+0.6
2,895,590	-		GFF2842	0.89	-0.6
2,895,594	+		GFF2842	0.89	+0.9
2,895,649	+				-0.6
2,895,657	-				-0.8
2,895,661	+				+0.1
2,895,667	+				-1.1
2,895,669	-				-0.3
2,895,673	+				-2.2
2,895,674	+				+0.1
2,895,679	+				+0.5
2,895,679	+				+0.1
2,895,681	-				-0.3
2,895,682	-				-0.1
2,895,682	-				-1.0
2,895,682	-				-0.0
2,895,682	-				-1.7
2,895,684	+				+0.9
2,895,700	-				+0.1
2,895,702	-				+0.1
2,895,752	+				+0.2
2,895,773	+				+0.4
2,895,852	+				+0.1
2,895,882	+				-2.3
2,895,905	+				+0.7
2,895,905	+				-1.2
2,895,905	+				+0.8
2,895,905	+				-1.7
2,895,913	-				-2.1
2,895,913	-				+1.2
2,895,913	-				-0.8
2,895,913	-				-0.2
2,895,913	-				+0.9
2,895,918	-				-0.3
2,895,928	+				-2.5
2,895,928	+				+0.4
2,895,928	+				-0.0
2,895,928	+				+0.9
2,895,928	+				-2.0
2,895,928	+				-0.8
2,895,936	-				-0.5
2,895,946	+				+0.3
2,895,965	+				-0.8
2,895,986	+				-0.2
2,895,994	-				+1.0
2,895,994	-				-1.2
2,896,008	+				-0.0
2,896,010	-				-1.4
2,896,010	-				-2.0
2,896,016	-				+0.2
2,896,016	-				-1.0
2,896,016	-				+0.0
2,896,017	+				+0.4
2,896,021	-				-1.0
2,896,021	-				-0.8
2,896,024	+				-0.0
2,896,025	-				+0.2
2,896,032	-				+1.5
2,896,066	+				+0.8
2,896,084	+				-0.2
2,896,084	-				+0.3
2,896,106	-		GFF2843	0.11	-0.6
2,896,115	+		GFF2843	0.12	-0.1
2,896,115	+		GFF2843	0.12	-1.4
2,896,115	+		GFF2843	0.12	-0.0
2,896,131	+		GFF2843	0.13	-0.5
2,896,153	+		GFF2843	0.15	-1.0
2,896,164	-		GFF2843	0.16	+0.5
2,896,178	-		GFF2843	0.17	-1.3
2,896,192	+		GFF2843	0.18	-1.2
2,896,200	-		GFF2843	0.19	+0.8
2,896,221	-		GFF2843	0.21	+0.9
2,896,230	+		GFF2843	0.21	+0.2
2,896,230	+		GFF2843	0.21	-0.1
2,896,230	+		GFF2843	0.21	+1.0
2,896,230	+		GFF2843	0.21	-0.3
2,896,230	+		GFF2843	0.21	-0.2
2,896,238	-		GFF2843	0.22	-1.1
2,896,238	-		GFF2843	0.22	+0.2
2,896,238	-		GFF2843	0.22	+0.7
2,896,238	-		GFF2843	0.22	+1.3
2,896,238	-		GFF2843	0.22	+1.4
2,896,255	-		GFF2843	0.23	-1.2
2,896,267	-		GFF2843	0.24	-1.1
2,896,272	+		GFF2843	0.25	-0.0
2,896,287	+		GFF2843	0.26	-1.5
2,896,292	+		GFF2843	0.26	-0.6
2,896,295	-		GFF2843	0.26	-0.8
2,896,295	-		GFF2843	0.26	-1.2
2,896,297	+		GFF2843	0.27	+0.9
2,896,305	-		GFF2843	0.27	+0.1
2,896,315	-		GFF2843	0.28	-1.3
2,896,323	+		GFF2843	0.29	+0.2
2,896,376	+		GFF2843	0.33	-1.0
2,896,376	+		GFF2843	0.33	-2.4
2,896,384	-		GFF2843	0.33	-1.3
2,896,394	+		GFF2843	0.34	-0.1
2,896,425	+		GFF2843	0.37	-1.1
2,896,433	-		GFF2843	0.37	+0.2
2,896,435	-		GFF2843	0.37	-0.2
2,896,441	-		GFF2843	0.38	-0.3
2,896,447	+		GFF2843	0.38	-1.5
2,896,447	+		GFF2843	0.38	-1.1
2,896,447	+		GFF2843	0.38	-0.6
2,896,455	-		GFF2843	0.39	+0.1
2,896,476	-		GFF2843	0.41	-0.3
2,896,505	+		GFF2843	0.43	+0.0
2,896,513	-		GFF2843	0.44	+0.3
2,896,527	+		GFF2843	0.45	-1.1
2,896,532	+		GFF2843	0.45	-0.9
2,896,535	-		GFF2843	0.45	-1.0
2,896,545	-		GFF2843	0.46	-1.6
2,896,547	+		GFF2843	0.46	+0.6
2,896,547	+		GFF2843	0.46	-1.0
2,896,549	+		GFF2843	0.46	-0.9
2,896,549	+		GFF2843	0.46	-2.1
2,896,555	-		GFF2843	0.47	+1.2
2,896,555	-		GFF2843	0.47	+0.9
2,896,555	-		GFF2843	0.47	-0.3
2,896,563	-		GFF2843	0.48	-0.8
2,896,615	+		GFF2843	0.52	-0.1
2,896,615	+		GFF2843	0.52	+0.2
2,896,615	+		GFF2843	0.52	-0.9
2,896,618	-		GFF2843	0.52	-0.2
2,896,628	+		GFF2843	0.53	-0.2
2,896,628	+		GFF2843	0.53	-2.1
2,896,628	+		GFF2843	0.53	+0.1
2,896,628	-		GFF2843	0.53	-0.2
2,896,630	-		GFF2843	0.53	-0.9
2,896,631	-		GFF2843	0.53	+1.3
2,896,633	+		GFF2843	0.53	-1.6
2,896,633	+		GFF2843	0.53	-0.9
2,896,636	-		GFF2843	0.53	+0.2
2,896,636	-		GFF2843	0.53	+1.2
2,896,638	+		GFF2843	0.54	+0.8
2,896,638	-		GFF2843	0.54	-1.4
2,896,641	-		GFF2843	0.54	+0.4
2,896,641	-		GFF2843	0.54	+0.4
2,896,641	-		GFF2843	0.54	-1.3
2,896,663	+		GFF2843	0.56	-0.1
2,896,665	+		GFF2843	0.56	+0.3
2,896,665	+		GFF2843	0.56	-1.3
2,896,665	+		GFF2843	0.56	-1.7
2,896,665	+		GFF2843	0.56	+0.1
2,896,673	-		GFF2843	0.56	-1.5
2,896,673	-		GFF2843	0.56	-0.1
2,896,741	+		GFF2843	0.62	+0.5
2,896,744	-		GFF2843	0.62	-0.2
2,896,746	+		GFF2843	0.62	-1.8
2,896,746	+		GFF2843	0.62	-0.8
2,896,749	-		GFF2843	0.62	-0.0
2,896,749	-		GFF2843	0.62	+0.0
2,896,749	-		GFF2843	0.62	-1.2
2,896,751	+		GFF2843	0.62	+0.1
2,896,784	-		GFF2843	0.65	+0.3
2,896,795	+		GFF2843	0.66	-1.0
2,896,820	-		GFF2843	0.68	-0.7
2,896,835	+		GFF2843	0.69	+1.3
2,896,835	+		GFF2843	0.69	-0.8
2,896,846	+		GFF2843	0.70	-0.6
2,896,854	-		GFF2843	0.71	-0.6
2,896,854	-		GFF2843	0.71	+0.9
2,896,862	-		GFF2843	0.71	-2.1
2,896,888	+		GFF2843	0.73	+2.1
2,896,971	+		GFF2843	0.80	-1.0
2,896,971	+		GFF2843	0.80	-0.7
2,896,980	+		GFF2843	0.81	-0.0
2,896,985	+		GFF2843	0.81	-0.5
2,896,988	-		GFF2843	0.81	+0.1
2,896,990	+		GFF2843	0.81	+1.0
2,896,998	-		GFF2843	0.82	+0.6
2,897,007	-		GFF2843	0.83	+0.2
2,897,016	+		GFF2843	0.83	-0.9
2,897,064	-		GFF2843	0.87	+1.0
2,897,073	+		GFF2843	0.88	-0.2
2,897,078	+		GFF2843	0.88	-0.4
2,897,078	+		GFF2843	0.88	-0.2
2,897,078	+		GFF2843	0.88	+0.6
2,897,081	-		GFF2843	0.89	-0.3
2,897,081	-		GFF2843	0.89	+0.3
2,897,081	-		GFF2843	0.89	-0.8
2,897,083	+		GFF2843	0.89	-0.4
2,897,083	+		GFF2843	0.89	+1.0
2,897,083	+		GFF2843	0.89	+0.4
2,897,083	+		GFF2843	0.89	+0.0
2,897,083	+		GFF2843	0.89	-1.1
2,897,083	+		GFF2843	0.89	+0.6
2,897,091	-		GFF2843	0.89	-1.8
2,897,091	-		GFF2843	0.89	-0.1
2,897,091	-		GFF2843	0.89	-1.3
2,897,091	-		GFF2843	0.89	-1.8
2,897,091	-		GFF2843	0.89	-1.5
2,897,091	-		GFF2843	0.89	-0.2
2,897,091	-		GFF2843	0.89	-0.5
2,897,091	-		GFF2843	0.89	+0.7
2,897,091	-		GFF2843	0.89	-0.3
2,897,091	-		GFF2843	0.89	-0.2
2,897,104	+				-0.2
2,897,129	-				-0.8
2,897,131	-				-0.0
2,897,135	+				+1.7
2,897,173	-				+0.3
2,897,181	-				-1.3
2,897,205	+				+0.4
2,897,205	+				-0.7
2,897,213	+				-0.6
2,897,213	+				+0.1
2,897,215	+				+0.7
2,897,223	-				+0.0
2,897,223	-				-0.6
2,897,238	-				-0.3
2,897,239	+				-2.3
2,897,247	-				+0.9
2,897,259	+				-2.5
2,897,259	+				-0.7
2,897,279	+				+0.1
2,897,279	+				-1.2
2,897,279	+				+2.1
2,897,279	+				-1.4
2,897,279	+				-0.1
2,897,279	+				+0.2
2,897,279	+				+0.1
2,897,279	+				-0.8
2,897,279	+				+0.6
2,897,279	+				-0.7
2,897,279	+				+0.1
2,897,279	+				+1.3
2,897,279	+				-0.2
2,897,279	+				+0.8
2,897,284	+				-0.1
2,897,287	-				-1.3
2,897,287	-				+0.3
2,897,287	-				-1.2
2,897,308	-				-1.1
2,897,326	-				+0.5
2,897,341	+				-1.8
2,897,354	+				-0.9
2,897,354	+				-0.2
2,897,354	+				+1.4
2,897,362	-				-0.2
2,897,362	-				-0.5
2,897,362	-				-0.2
2,897,366	-				-1.4
2,897,405	-				-1.5
2,897,405	-				+0.7
2,897,409	+				+0.2
2,897,426	+				-0.1
2,897,444	-				-0.7
2,897,460	-				+0.4
2,897,460	-				+0.3
2,897,462	-				+0.3
2,897,464	+				-0.1
2,897,469	+				-2.3
2,897,482	-				-0.2
2,897,486	+				+0.9
2,897,486	+				-0.3
2,897,486	+				+0.9
2,897,486	+				-1.6
2,897,494	-				-0.1
2,897,494	-				-0.0
2,897,504	-				+0.5
2,897,513	-				+1.0
2,897,543	+		GFF2844	0.10	-0.0
2,897,578	-		GFF2844	0.11	-2.1
2,897,581	-		GFF2844	0.11	+1.1
2,897,583	+		GFF2844	0.12	-0.7
2,897,591	-		GFF2844	0.12	-2.6
2,897,591	-		GFF2844	0.12	-1.1
2,897,591	-		GFF2844	0.12	+0.2
2,897,597	-		GFF2844	0.12	-2.0
2,897,616	+		GFF2844	0.13	+0.4
2,897,616	+		GFF2844	0.13	-0.1
2,897,619	-		GFF2844	0.13	-0.2
2,897,619	-		GFF2844	0.13	+0.2
2,897,636	+		GFF2844	0.14	+1.2
2,897,636	+		GFF2844	0.14	+0.5
2,897,636	+		GFF2844	0.14	-1.8
2,897,636	+		GFF2844	0.14	-1.5
2,897,641	+		GFF2844	0.14	+0.3
2,897,649	-		GFF2844	0.14	+0.2
2,897,649	-		GFF2844	0.14	-1.3
2,897,649	-		GFF2844	0.14	-1.9
2,897,649	-		GFF2844	0.14	-0.7
2,897,654	-		GFF2844	0.14	-0.8
2,897,659	+		GFF2844	0.14	+0.3
2,897,666	+		GFF2844	0.15	-0.5
2,897,689	-		GFF2844	0.16	-0.1
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2,898,186	+		GFF2844	0.34	-1.3
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