Strain Fitness in Sphingobium sp. HT1-2 around GFF2842

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,893,258	-				-0.5
2,893,258	-				-2.0
2,893,258	-				-0.6
2,893,265	+				-0.2
2,893,265	+				+0.5
2,893,265	+				+1.7
2,893,265	+				+1.0
2,893,265	+				-0.4
2,893,265	+				+0.2
2,893,265	+				+0.2
2,893,265	+				-1.3
2,893,265	+				+0.2
2,893,265	+				-0.7
2,893,265	+				-0.3
2,893,265	+				+1.9
2,893,265	+				-1.1
2,893,265	+				-0.0
2,893,265	+				-1.7
2,893,265	+				-0.1
2,893,272	-		GFF2841	0.10	-0.8
2,893,273	-		GFF2841	0.10	-1.1
2,893,273	-		GFF2841	0.10	-1.5
2,893,273	-		GFF2841	0.10	+0.3
2,893,273	-		GFF2841	0.10	+0.7
2,893,273	-		GFF2841	0.10	-1.3
2,893,273	-		GFF2841	0.10	-0.4
2,893,273	-		GFF2841	0.10	+1.3
2,893,273	-		GFF2841	0.10	-0.1
2,893,273	-		GFF2841	0.10	-2.2
2,893,273	-		GFF2841	0.10	-1.3
2,893,273	-		GFF2841	0.10	+0.9
2,893,273	-		GFF2841	0.10	-0.3
2,893,273	-		GFF2841	0.10	-0.1
2,893,273	-		GFF2841	0.10	+0.7
2,893,273	-		GFF2841	0.10	+0.4
2,893,273	-		GFF2841	0.10	-0.5
2,893,273	-		GFF2841	0.10	-0.4
2,893,273	-		GFF2841	0.10	-0.8
2,893,273	-		GFF2841	0.10	+1.2
2,893,304	-		GFF2841	0.13	+0.2
2,893,344	+		GFF2841	0.17	-0.4
2,893,360	+		GFF2841	0.18	-0.3
2,893,362	+		GFF2841	0.18	-0.1
2,893,367	+		GFF2841	0.19	-1.7
2,893,367	+		GFF2841	0.19	-0.3
2,893,375	-		GFF2841	0.20	-0.1
2,893,375	-		GFF2841	0.20	-0.8
2,893,385	-		GFF2841	0.20	+1.8
2,893,394	+		GFF2841	0.21	-0.1
2,893,394	+		GFF2841	0.21	-0.2
2,893,394	+		GFF2841	0.21	-1.0
2,893,402	-		GFF2841	0.22	+0.1
2,893,402	-		GFF2841	0.22	-0.2
2,893,418	-		GFF2841	0.23	-1.4
2,893,420	+		GFF2841	0.24	+0.6
2,893,420	+		GFF2841	0.24	-0.5
2,893,420	+		GFF2841	0.24	-0.3
2,893,479	-		GFF2841	0.29	-0.2
2,893,491	+		GFF2841	0.30	+0.8
2,893,509	+		GFF2841	0.32	-1.1
2,893,518	+		GFF2841	0.33	-0.3
2,893,518	+		GFF2841	0.33	-0.3
2,893,521	-		GFF2841	0.33	+0.1
2,893,526	-		GFF2841	0.33	+0.7
2,893,531	-		GFF2841	0.34	+1.0
2,893,531	-		GFF2841	0.34	-0.4
2,893,536	+		GFF2841	0.34	+0.2
2,893,536	-		GFF2841	0.34	-2.3
2,893,541	-		GFF2841	0.35	-0.0
2,893,559	+		GFF2841	0.36	-2.3
2,893,569	+		GFF2841	0.37	-0.8
2,893,569	+		GFF2841	0.37	-1.5
2,893,579	+		GFF2841	0.38	+1.0
2,893,587	-		GFF2841	0.39	+0.7
2,893,611	+		GFF2841	0.41	+0.8
2,893,629	-		GFF2841	0.43	-0.9
2,893,652	-		GFF2841	0.45	+0.4
2,893,682	+		GFF2841	0.48	+0.1
2,893,700	-		GFF2841	0.49	-0.9
2,893,706	+		GFF2841	0.50	+0.1
2,893,719	+		GFF2841	0.51	-0.3
2,893,719	+		GFF2841	0.51	-0.8
2,893,746	+		GFF2841	0.53	+0.0
2,893,766	+		GFF2841	0.55	-0.8
2,893,788	+		GFF2841	0.57	+1.1
2,893,795	+		GFF2841	0.58	+0.0
2,893,795	+		GFF2841	0.58	-0.8
2,893,803	-		GFF2841	0.59	-1.0
2,893,815	-		GFF2841	0.60	-0.5
2,893,829	+		GFF2841	0.61	-2.1
2,893,830	-		GFF2841	0.61	-2.7
2,893,837	-		GFF2841	0.62	+0.7
2,893,847	-		GFF2841	0.63	-0.0
2,893,858	+		GFF2841	0.64	-0.1
2,893,861	+		GFF2841	0.64	+0.5
2,893,866	+		GFF2841	0.64	-2.0
2,893,867	-		GFF2841	0.65	+0.2
2,893,871	+		GFF2841	0.65	+1.4
2,893,871	+		GFF2841	0.65	-1.9
2,893,884	-		GFF2841	0.66	+0.6
2,893,886	+		GFF2841	0.66	+0.0
2,893,886	+		GFF2841	0.66	-0.2
2,893,891	+		GFF2841	0.67	-0.0
2,893,895	-		GFF2841	0.67	-0.3
2,893,913	+		GFF2841	0.69	-0.2
2,893,913	+		GFF2841	0.69	-0.0
2,893,923	+		GFF2841	0.70	+1.7
2,893,923	+		GFF2841	0.70	-0.0
2,893,928	+		GFF2841	0.70	-1.3
2,893,928	+		GFF2841	0.70	+1.1
2,893,928	+		GFF2841	0.70	-2.1
2,893,928	+		GFF2841	0.70	-0.1
2,893,928	+		GFF2841	0.70	+0.5
2,893,928	+		GFF2841	0.70	-0.3
2,893,928	+		GFF2841	0.70	-0.4
2,893,928	+		GFF2841	0.70	+0.6
2,893,936	-		GFF2841	0.71	-0.3
2,893,936	-		GFF2841	0.71	-1.1
2,893,987	+		GFF2841	0.76	-0.3
2,893,990	-		GFF2841	0.76	-2.3
2,893,995	-		GFF2841	0.76	+1.1
2,893,995	-		GFF2841	0.76	+0.8
2,894,039	+		GFF2841	0.80	-0.2
2,894,047	-		GFF2841	0.81	-1.3
2,894,061	-		GFF2841	0.82	-2.1
2,894,072	+		GFF2841	0.83	+0.2
2,894,072	+		GFF2841	0.83	+0.9
2,894,072	+		GFF2841	0.83	-0.3
2,894,072	+		GFF2841	0.83	-2.8
2,894,080	-		GFF2841	0.84	-2.5
2,894,100	-		GFF2841	0.86	-0.8
2,894,147	+				-0.9
2,894,148	-				-0.3
2,894,155	-				+0.2
2,894,155	-				-1.7
2,894,177	+				+0.4
2,894,177	+				-0.8
2,894,185	-				-0.6
2,894,185	-				-0.2
2,894,185	-				-0.8
2,894,185	-				-1.3
2,894,190	+				-0.6
2,894,195	+				+0.7
2,894,198	-				+0.9
2,894,221	-				-0.0
2,894,254	+				+0.8
2,894,308	-				-0.2
2,894,318	+				-0.2
2,894,318	+				-0.2
2,894,321	-				-1.2
2,894,321	-				-0.2
2,894,323	+				+0.1
2,894,323	+				-0.1
2,894,331	-				-0.7
2,894,337	-				+0.2
2,894,340	+				-0.9
2,894,362	+				+0.1
2,894,362	+				+0.6
2,894,362	+				-2.5
2,894,368	+				-0.1
2,894,370	-				+0.6
2,894,386	-				-2.1
2,894,414	+		GFF2842	0.11	+0.4
2,894,414	+		GFF2842	0.11	+0.8
2,894,414	+		GFF2842	0.11	-0.5
2,894,414	+		GFF2842	0.11	+0.3
2,894,422	-		GFF2842	0.11	-0.4
2,894,422	-		GFF2842	0.11	-1.5
2,894,422	-		GFF2842	0.11	+0.8
2,894,422	-		GFF2842	0.11	-1.0
2,894,451	-		GFF2842	0.13	-1.6
2,894,453	-		GFF2842	0.13	-0.3
2,894,474	+		GFF2842	0.15	-2.3
2,894,487	-		GFF2842	0.16	+0.0
2,894,508	-		GFF2842	0.17	-0.6
2,894,508	-		GFF2842	0.17	+0.7
2,894,516	-		GFF2842	0.18	+0.0
2,894,518	+		GFF2842	0.18	+0.4
2,894,527	+		GFF2842	0.18	-0.8
2,894,535	-		GFF2842	0.19	-0.5
2,894,535	-		GFF2842	0.19	+0.1
2,894,535	-		GFF2842	0.19	+0.2
2,894,535	-		GFF2842	0.19	+0.4
2,894,540	+		GFF2842	0.19	-1.6
2,894,553	+		GFF2842	0.20	-0.2
2,894,593	+		GFF2842	0.23	-0.8
2,894,597	+		GFF2842	0.23	+0.6
2,894,607	+		GFF2842	0.24	-2.3
2,894,644	+		GFF2842	0.26	+0.5
2,894,644	+		GFF2842	0.26	-0.4
2,894,644	+		GFF2842	0.26	+0.5
2,894,644	+		GFF2842	0.26	-1.0
2,894,644	+		GFF2842	0.26	-1.0
2,894,644	+		GFF2842	0.26	+1.1
2,894,644	+		GFF2842	0.26	+0.9
2,894,644	+		GFF2842	0.26	+0.2
2,894,644	+		GFF2842	0.26	-1.0
2,894,644	+		GFF2842	0.26	-0.3
2,894,644	+		GFF2842	0.26	-0.8
2,894,644	+		GFF2842	0.26	-1.2
2,894,644	+		GFF2842	0.26	-0.5
2,894,652	-		GFF2842	0.27	+0.3
2,894,652	-		GFF2842	0.27	+0.4
2,894,652	-		GFF2842	0.27	-0.2
2,894,652	-		GFF2842	0.27	-0.4
2,894,652	-		GFF2842	0.27	-2.1
2,894,652	-		GFF2842	0.27	+0.4
2,894,652	-		GFF2842	0.27	-1.0
2,894,652	-		GFF2842	0.27	-1.5
2,894,652	-		GFF2842	0.27	+0.9
2,894,652	-		GFF2842	0.27	-1.2
2,894,652	-		GFF2842	0.27	-0.5
2,894,652	-		GFF2842	0.27	+1.2
2,894,652	-		GFF2842	0.27	-0.6
2,894,652	-		GFF2842	0.27	-0.5
2,894,652	-		GFF2842	0.27	+0.0
2,894,652	-		GFF2842	0.27	-0.3
2,894,652	-		GFF2842	0.27	-0.8
2,894,652	-		GFF2842	0.27	-0.3
2,894,652	-		GFF2842	0.27	+0.4
2,894,654	+		GFF2842	0.27	-0.1
2,894,668	-		GFF2842	0.28	-0.7
2,894,679	+		GFF2842	0.28	-1.3
2,894,679	+		GFF2842	0.28	-2.6
2,894,679	+		GFF2842	0.28	-0.8
2,894,679	+		GFF2842	0.28	-0.2
2,894,718	+		GFF2842	0.31	+0.6
2,894,725	-		GFF2842	0.32	-0.4
2,894,725	-		GFF2842	0.32	-0.8
2,894,735	-		GFF2842	0.32	-0.8
2,894,747	-		GFF2842	0.33	+1.2
2,894,750	+		GFF2842	0.33	-1.7
2,894,753	-		GFF2842	0.33	-0.2
2,894,758	-		GFF2842	0.34	-0.4
2,894,780	-		GFF2842	0.35	+0.4
2,894,780	-		GFF2842	0.35	+0.4
2,894,790	-		GFF2842	0.36	+1.7
2,894,824	-		GFF2842	0.38	+1.4
2,894,830	+		GFF2842	0.39	-0.3
2,894,836	+		GFF2842	0.39	-0.2
2,894,839	-		GFF2842	0.39	-1.1
2,894,850	-		GFF2842	0.40	-0.7
2,894,852	-		GFF2842	0.40	-1.3
2,894,860	-		GFF2842	0.41	-1.0
2,894,860	-		GFF2842	0.41	-0.5
2,894,884	-		GFF2842	0.42	+0.5
2,894,930	-		GFF2842	0.45	+0.3
2,894,943	-		GFF2842	0.46	-0.8
2,894,982	+		GFF2842	0.49	+0.2
2,894,982	+		GFF2842	0.49	-0.8
2,894,984	-		GFF2842	0.49	+0.5
2,894,988	-		GFF2842	0.49	-0.4
2,894,990	-		GFF2842	0.49	-0.2
2,894,990	-		GFF2842	0.49	-0.6
2,894,995	-		GFF2842	0.49	+1.4
2,894,998	-		GFF2842	0.50	-1.7
2,895,001	+		GFF2842	0.50	-1.3
2,895,001	+		GFF2842	0.50	-0.6
2,895,001	-		GFF2842	0.50	+0.3
2,895,009	-		GFF2842	0.50	-2.1
2,895,022	+		GFF2842	0.51	-0.6
2,895,023	+		GFF2842	0.51	+0.9
2,895,028	+		GFF2842	0.52	-0.9
2,895,030	-		GFF2842	0.52	-1.0
2,895,030	-		GFF2842	0.52	-0.4
2,895,030	-		GFF2842	0.52	+0.3
2,895,035	-		GFF2842	0.52	+0.8
2,895,046	-		GFF2842	0.53	+0.1
2,895,047	-		GFF2842	0.53	+0.2
2,895,058	-		GFF2842	0.54	-0.4
2,895,062	+		GFF2842	0.54	-0.3
2,895,062	+		GFF2842	0.54	+0.1
2,895,070	-		GFF2842	0.54	-0.8
2,895,099	-		GFF2842	0.56	-0.8
2,895,106	+		GFF2842	0.57	-1.9
2,895,114	+		GFF2842	0.57	+0.6
2,895,119	+		GFF2842	0.58	-0.2
2,895,119	+		GFF2842	0.58	+1.4
2,895,122	-		GFF2842	0.58	-0.0
2,895,127	-		GFF2842	0.58	-0.1
2,895,127	-		GFF2842	0.58	-0.1
2,895,127	-		GFF2842	0.58	+0.1
2,895,127	-		GFF2842	0.58	-0.2
2,895,127	-		GFF2842	0.58	+0.5
2,895,127	-		GFF2842	0.58	-3.1
2,895,127	-		GFF2842	0.58	+0.4
2,895,137	+		GFF2842	0.59	-0.5
2,895,137	+		GFF2842	0.59	+0.7
2,895,137	+		GFF2842	0.59	+0.2
2,895,145	-		GFF2842	0.59	-1.5
2,895,145	-		GFF2842	0.59	+0.2
2,895,145	-		GFF2842	0.59	-0.6
2,895,150	+		GFF2842	0.60	+0.2
2,895,170	-		GFF2842	0.61	-0.2
2,895,185	+		GFF2842	0.62	-0.2
2,895,193	-		GFF2842	0.63	-0.3
2,895,197	-		GFF2842	0.63	-0.5
2,895,241	+		GFF2842	0.66	-0.8
2,895,245	+		GFF2842	0.66	+0.7
2,895,249	-		GFF2842	0.66	-0.6
2,895,249	-		GFF2842	0.66	+0.4
2,895,253	-		GFF2842	0.67	-1.1
2,895,253	-		GFF2842	0.67	+1.1
2,895,253	-		GFF2842	0.67	+0.7
2,895,294	+		GFF2842	0.69	+0.0
2,895,296	+		GFF2842	0.69	-0.4
2,895,296	+		GFF2842	0.69	-1.9
2,895,302	-		GFF2842	0.70	-0.1
2,895,302	-		GFF2842	0.70	+0.0
2,895,304	-		GFF2842	0.70	+0.8
2,895,304	-		GFF2842	0.70	+0.8
2,895,347	+		GFF2842	0.73	-0.2
2,895,351	+		GFF2842	0.73	-2.5
2,895,355	-		GFF2842	0.73	-0.9
2,895,356	-		GFF2842	0.73	-0.3
2,895,359	-		GFF2842	0.74	-0.1
2,895,370	-		GFF2842	0.74	-0.1
2,895,373	+		GFF2842	0.75	-0.3
2,895,392	+		GFF2842	0.76	-0.6
2,895,400	-		GFF2842	0.76	+0.2
2,895,410	-		GFF2842	0.77	-0.9
2,895,412	+		GFF2842	0.77	-0.2
2,895,415	-		GFF2842	0.77	+0.5
2,895,420	-		GFF2842	0.78	+0.0
2,895,429	+		GFF2842	0.78	-0.3
2,895,438	-		GFF2842	0.79	-1.1
2,895,443	-		GFF2842	0.79	+1.0
2,895,493	-		GFF2842	0.83	-0.1
2,895,493	-		GFF2842	0.83	-0.0
2,895,494	+		GFF2842	0.83	+0.6
2,895,509	+		GFF2842	0.84	-1.0
2,895,530	+		GFF2842	0.85	-0.9
2,895,541	+		GFF2842	0.86	-0.0
2,895,551	+		GFF2842	0.86	+0.6
2,895,590	-		GFF2842	0.89	-0.6
2,895,594	+		GFF2842	0.89	+0.9
2,895,649	+				-0.6
2,895,657	-				-0.8
2,895,661	+				+0.1
2,895,667	+				-1.1
2,895,669	-				-0.3
2,895,673	+				-2.2
2,895,674	+				+0.1
2,895,679	+				+0.5
2,895,679	+				+0.1
2,895,681	-				-0.3
2,895,682	-				-0.1
2,895,682	-				-1.0
2,895,682	-				-0.0
2,895,682	-				-1.7
2,895,684	+				+0.9
2,895,700	-				+0.1
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