Strain Fitness in Sphingobium sp. HT1-2 around GFF2828

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,871,802	+		GFF2827	0.43	-0.1
2,871,802	+		GFF2827	0.43	-0.4
2,871,802	+		GFF2827	0.43	+0.1
2,871,802	+		GFF2827	0.43	+0.1
2,871,810	-		GFF2827	0.44	+0.0
2,871,810	-		GFF2827	0.44	+0.5
2,871,810	-		GFF2827	0.44	-1.7
2,871,810	-		GFF2827	0.44	-1.8
2,871,819	+		GFF2827	0.44	+0.9
2,871,829	-		GFF2827	0.45	-0.8
2,871,846	+		GFF2827	0.46	-0.2
2,871,885	-		GFF2827	0.48	+0.7
2,871,921	+		GFF2827	0.50	+0.2
2,871,929	-		GFF2827	0.51	+0.2
2,871,934	+		GFF2827	0.51	-1.6
2,871,936	+		GFF2827	0.51	-0.8
2,871,936	+		GFF2827	0.51	-0.4
2,871,937	-		GFF2827	0.51	+0.2
2,871,942	-		GFF2827	0.52	-0.2
2,871,944	-		GFF2827	0.52	-1.3
2,871,944	-		GFF2827	0.52	-0.6
2,871,944	-		GFF2827	0.52	-1.8
2,871,980	-		GFF2827	0.54	-0.8
2,871,986	-		GFF2827	0.54	-0.2
2,871,990	+		GFF2827	0.55	+0.1
2,871,998	-		GFF2827	0.55	-0.4
2,872,001	+		GFF2827	0.55	-2.2
2,872,019	-		GFF2827	0.56	-0.2
2,872,041	+		GFF2827	0.58	-1.9
2,872,049	-		GFF2827	0.58	-0.5
2,872,049	-		GFF2827	0.58	+0.3
2,872,054	+		GFF2827	0.58	-1.7
2,872,054	+		GFF2827	0.58	-0.3
2,872,054	+		GFF2827	0.58	-0.4
2,872,054	-		GFF2827	0.58	+0.4
2,872,062	-		GFF2827	0.59	+1.2
2,872,062	-		GFF2827	0.59	+0.2
2,872,066	-		GFF2827	0.59	-1.8
2,872,068	+		GFF2827	0.59	+1.1
2,872,068	+		GFF2827	0.59	-1.2
2,872,092	+		GFF2827	0.61	-0.3
2,872,092	+		GFF2827	0.61	+1.5
2,872,093	+		GFF2827	0.61	+0.4
2,872,100	-		GFF2827	0.61	-1.2
2,872,100	-		GFF2827	0.61	-0.2
2,872,104	+		GFF2827	0.61	-1.5
2,872,104	+		GFF2827	0.61	-1.2
2,872,104	+		GFF2827	0.61	-1.8
2,872,112	-		GFF2827	0.62	-1.4
2,872,112	-		GFF2827	0.62	-0.1
2,872,112	-		GFF2827	0.62	-1.1
2,872,114	-		GFF2827	0.62	-1.0
2,872,119	+		GFF2827	0.62	+0.1
2,872,150	+		GFF2827	0.64	+0.3
2,872,154	-		GFF2827	0.64	-1.3
2,872,158	-		GFF2827	0.65	+0.7
2,872,176	+		GFF2827	0.66	+0.9
2,872,176	+		GFF2827	0.66	-0.7
2,872,184	-		GFF2827	0.66	-1.5
2,872,184	-		GFF2827	0.66	-0.3
2,872,191	-		GFF2827	0.66	+0.3
2,872,195	+		GFF2827	0.67	+0.0
2,872,195	+		GFF2827	0.67	+0.6
2,872,200	+		GFF2827	0.67	-1.8
2,872,200	+		GFF2827	0.67	-0.0
2,872,200	+		GFF2827	0.67	-0.3
2,872,203	-		GFF2827	0.67	-1.3
2,872,203	-		GFF2827	0.67	-0.7
2,872,208	-		GFF2827	0.68	+0.2
2,872,208	-		GFF2827	0.68	-2.2
2,872,208	-		GFF2827	0.68	-0.3
2,872,210	-		GFF2827	0.68	+0.4
2,872,221	+		GFF2827	0.68	-1.5
2,872,228	+		GFF2827	0.69	-0.8
2,872,229	+		GFF2827	0.69	-0.2
2,872,230	-		GFF2827	0.69	+0.2
2,872,236	-		GFF2827	0.69	+0.9
2,872,236	-		GFF2827	0.69	-0.2
2,872,236	-		GFF2827	0.69	-2.3
2,872,236	-		GFF2827	0.69	-1.0
2,872,238	+		GFF2827	0.69	-0.8
2,872,253	-		GFF2827	0.70	+1.2
2,872,357	+		GFF2827	0.76	-1.9
2,872,365	-		GFF2827	0.77	+0.3
2,872,373	-		GFF2827	0.77	+0.1
2,872,374	-		GFF2827	0.77	+0.0
2,872,374	-		GFF2827	0.77	+1.9
2,872,374	-		GFF2827	0.77	-0.2
2,872,375	-		GFF2827	0.77	+1.1
2,872,375	-		GFF2827	0.77	-0.5
2,872,375	-		GFF2827	0.77	-0.4
2,872,380	-		GFF2827	0.78	+0.2
2,872,391	+		GFF2827	0.78	+0.5
2,872,415	-		GFF2827	0.80	+0.0
2,872,442	+		GFF2827	0.81	+0.4
2,872,442	+		GFF2827	0.81	+1.0
2,872,446	+		GFF2827	0.82	+0.5
2,872,446	+		GFF2827	0.82	+0.8
2,872,459	-		GFF2827	0.82	-0.5
2,872,491	-		GFF2827	0.84	-0.9
2,872,491	-		GFF2827	0.84	-0.7
2,872,496	+		GFF2827	0.85	+0.0
2,872,526	-		GFF2827	0.86	-0.3
2,872,526	-		GFF2827	0.86	-0.6
2,872,541	+		GFF2827	0.87	+0.5
2,872,541	+		GFF2827	0.87	-1.8
2,872,541	+		GFF2827	0.87	-1.0
2,872,546	+		GFF2827	0.88	+0.1
2,872,549	-		GFF2827	0.88	+0.1
2,872,549	-		GFF2827	0.88	+0.3
2,872,549	-		GFF2827	0.88	-0.2
2,872,554	-		GFF2827	0.88	-0.2
2,872,558	+		GFF2827	0.88	+0.2
2,872,566	-		GFF2827	0.89	+1.2
2,872,574	+		GFF2827	0.89	+0.7
2,872,582	-		GFF2827	0.90	-2.6
2,872,603	-				+1.5
2,872,614	-				-0.6
2,872,620	+				+0.3
2,872,622	+				+0.5
2,872,634	+				+0.5
2,872,638	-				-1.9
2,872,639	+				+0.1
2,872,641	-				+0.5
2,872,644	+				-0.2
2,872,644	+				-0.3
2,872,644	+				-0.4
2,872,652	-				-0.2
2,872,655	-				-0.5
2,872,655	-				-0.4
2,872,655	-				-0.3
2,872,675	+				+0.6
2,872,683	-				+0.8
2,872,684	-				-0.0
2,872,688	-				+0.5
2,872,694	+				-0.7
2,872,694	+				-1.2
2,872,702	-				-0.2
2,872,733	+				-1.7
2,872,733	+				+0.5
2,872,733	+				+0.1
2,872,733	+				-1.1
2,872,733	+				+0.2
2,872,733	+				-0.4
2,872,741	-				-1.9
2,872,741	-				-0.5
2,872,751	-				+0.9
2,872,756	-				+0.1
2,872,756	-				-1.7
2,872,761	-				-1.5
2,872,761	-				-0.3
2,872,761	-				+0.2
2,872,776	-				+1.1
2,872,820	+				-1.5
2,872,820	+				-2.2
2,872,828	-				-0.7
2,872,828	-				-1.5
2,872,859	-		GFF2828	0.15	+0.1
2,872,901	-		GFF2828	0.24	+0.1
2,872,904	+		GFF2828	0.24	-0.2
2,872,905	+		GFF2828	0.24	-1.1
2,872,912	-		GFF2828	0.26	-2.0
2,872,929	+		GFF2828	0.30	-1.6
2,872,943	+		GFF2828	0.33	+0.2
2,872,951	-		GFF2828	0.34	+0.1
2,872,953	+		GFF2828	0.35	-0.2
2,873,005	+		GFF2828	0.46	+0.2
2,873,005	+		GFF2828	0.46	-1.6
2,873,010	+		GFF2828	0.47	+0.4
2,873,027	+		GFF2828	0.51	+0.7
2,873,033	+		GFF2828	0.52	+0.3
2,873,033	+		GFF2828	0.52	-0.2
2,873,033	+		GFF2828	0.52	-0.2
2,873,034	+		GFF2828	0.52	-2.0
2,873,035	-		GFF2828	0.53	+1.3
2,873,041	-		GFF2828	0.54	-2.7
2,873,042	-		GFF2828	0.54	-0.6
2,873,042	-		GFF2828	0.54	-2.3
2,873,044	+		GFF2828	0.55	-0.7
2,873,045	+		GFF2828	0.55	+0.3
2,873,045	+		GFF2828	0.55	+0.7
2,873,050	+		GFF2828	0.56	+1.4
2,873,050	+		GFF2828	0.56	-0.7
2,873,051	-		GFF2828	0.56	-0.7
2,873,058	-		GFF2828	0.58	+0.2
2,873,058	-		GFF2828	0.58	+0.4
2,873,069	+		GFF2828	0.60	+0.6
2,873,077	-		GFF2828	0.62	-0.4
2,873,077	-		GFF2828	0.62	-0.4
2,873,077	-		GFF2828	0.62	+0.1
2,873,077	-		GFF2828	0.62	+0.2
2,873,087	-		GFF2828	0.64	-1.2
2,873,104	+		GFF2828	0.68	+1.0
2,873,112	-		GFF2828	0.69	-0.4
2,873,112	-		GFF2828	0.69	-1.2
2,873,114	+		GFF2828	0.70	+0.2
2,873,159	+		GFF2828	0.79	+1.5
2,873,159	+		GFF2828	0.79	-2.3
2,873,159	+		GFF2828	0.79	-1.1
2,873,160	+		GFF2828	0.80	-0.1
2,873,160	+		GFF2828	0.80	-0.5
2,873,160	+		GFF2828	0.80	-0.8
2,873,160	+		GFF2828	0.80	-0.4
2,873,167	-		GFF2828	0.81	-2.2
2,873,167	-		GFF2828	0.81	-0.3
2,873,168	-		GFF2828	0.81	-2.2
2,873,168	-		GFF2828	0.81	-0.5
2,873,168	-		GFF2828	0.81	-1.0
2,873,168	-		GFF2828	0.81	+0.4
2,873,168	-		GFF2828	0.81	-0.1
2,873,168	-		GFF2828	0.81	-0.8
2,873,188	+		GFF2828	0.86	-0.2
2,873,287	-				+0.4
2,873,369	-				-0.8
2,873,374	+				-0.2
2,873,374	+				-0.4
2,873,396	+				-2.7
2,873,396	+				-2.2
2,873,396	+				+0.7
2,873,399	-				-1.7
2,873,401	+				-0.8
2,873,404	-				-0.1
2,873,404	-				-0.5
2,873,416	+				+0.2
2,873,418	+				-0.3
2,873,428	+				+0.1
2,873,444	+				+1.5
2,873,449	+				+0.2
2,873,452	-				-0.5
2,873,467	+				+0.0
2,873,473	-				+0.4
2,873,475	-				-0.3
2,873,475	-				-0.2
2,873,499	+		GFF2829	0.11	+0.6
2,873,519	+		GFF2829	0.13	+0.3
2,873,534	+		GFF2829	0.15	-2.4
2,873,534	+		GFF2829	0.15	-0.7
2,873,542	-		GFF2829	0.16	+1.7
2,873,572	-		GFF2829	0.18	+0.9
2,873,572	-		GFF2829	0.18	+0.2
2,873,615	-		GFF2829	0.23	-0.6
2,873,618	+		GFF2829	0.23	-0.4
2,873,618	+		GFF2829	0.23	-0.0
2,873,618	+		GFF2829	0.23	-0.2
2,873,618	+		GFF2829	0.23	-0.9
2,873,618	+		GFF2829	0.23	-0.9
2,873,621	-		GFF2829	0.23	-2.2
2,873,623	+		GFF2829	0.23	-0.3
2,873,626	-		GFF2829	0.24	+0.5
2,873,626	-		GFF2829	0.24	+0.2
2,873,626	-		GFF2829	0.24	+0.5
2,873,629	+		GFF2829	0.24	+1.7
2,873,629	+		GFF2829	0.24	-1.1
2,873,649	+		GFF2829	0.26	-1.5
2,873,657	-		GFF2829	0.26	+1.0
2,873,659	+		GFF2829	0.27	+0.5
2,873,659	+		GFF2829	0.27	-1.3
2,873,659	+		GFF2829	0.27	+0.2
2,873,659	+		GFF2829	0.27	-1.2
2,873,659	+		GFF2829	0.27	-0.5
2,873,659	+		GFF2829	0.27	-1.6
2,873,659	+		GFF2829	0.27	+0.8
2,873,659	+		GFF2829	0.27	-0.8
2,873,667	-		GFF2829	0.27	-0.3
2,873,667	-		GFF2829	0.27	+0.0
2,873,667	-		GFF2829	0.27	-1.3
2,873,667	-		GFF2829	0.27	+0.2
2,873,667	-		GFF2829	0.27	+0.4
2,873,667	-		GFF2829	0.27	+0.1
2,873,667	-		GFF2829	0.27	-0.4
2,873,667	-		GFF2829	0.27	-1.0
2,873,667	-		GFF2829	0.27	-0.5
2,873,674	-		GFF2829	0.28	-0.2
2,873,681	+		GFF2829	0.29	+0.1
2,873,687	+		GFF2829	0.29	-2.2
2,873,700	+		GFF2829	0.31	-1.0
2,873,700	-		GFF2829	0.31	-1.5
2,873,705	-		GFF2829	0.31	-0.2
2,873,708	-		GFF2829	0.31	-2.8
2,873,728	-		GFF2829	0.33	+1.1
2,873,759	-		GFF2829	0.36	-0.3
2,873,765	-		GFF2829	0.37	-0.8
2,873,771	+		GFF2829	0.37	+1.5
2,873,777	+		GFF2829	0.38	-1.5
2,873,777	+		GFF2829	0.38	+1.1
2,873,785	-		GFF2829	0.39	-1.3
2,873,805	+		GFF2829	0.41	-1.4
2,873,813	+		GFF2829	0.41	-1.9
2,873,818	+		GFF2829	0.42	+1.0
2,873,818	+		GFF2829	0.42	-0.3
2,873,818	+		GFF2829	0.42	-2.8
2,873,818	+		GFF2829	0.42	-1.4
2,873,823	+		GFF2829	0.42	+1.0
2,873,826	-		GFF2829	0.43	+1.0
2,873,826	-		GFF2829	0.43	-1.6
2,873,826	-		GFF2829	0.43	+0.4
2,873,826	-		GFF2829	0.43	+0.9
2,873,826	-		GFF2829	0.43	-1.3
2,873,826	-		GFF2829	0.43	+0.0
2,873,831	-		GFF2829	0.43	-0.2
2,873,841	-		GFF2829	0.44	+0.3
2,873,847	-		GFF2829	0.45	-1.2
2,873,877	+		GFF2829	0.47	-1.4
2,873,882	+		GFF2829	0.48	+0.1
2,873,886	+		GFF2829	0.48	-0.0
2,873,891	+		GFF2829	0.49	-1.8
2,873,894	-		GFF2829	0.49	+0.4
2,873,896	+		GFF2829	0.49	-0.7
2,873,899	-		GFF2829	0.49	-2.5
2,873,901	+		GFF2829	0.50	-0.3
2,873,903	+		GFF2829	0.50	-0.9
2,873,906	+		GFF2829	0.50	-1.5
2,873,906	+		GFF2829	0.50	-0.0
2,873,906	+		GFF2829	0.50	-1.5
2,873,919	-		GFF2829	0.51	-1.3
2,873,931	-		GFF2829	0.53	+0.8
2,873,933	+		GFF2829	0.53	+0.2
2,873,936	-		GFF2829	0.53	-0.6
2,873,948	-		GFF2829	0.54	-0.2
2,873,951	+		GFF2829	0.54	+1.1
2,873,958	-		GFF2829	0.55	-0.2
2,873,990	-		GFF2829	0.58	-0.0
2,873,998	+		GFF2829	0.59	-0.3
2,874,072	+		GFF2829	0.66	-0.0
2,874,072	+		GFF2829	0.66	-1.7
2,874,072	+		GFF2829	0.66	-0.7
2,874,081	+		GFF2829	0.67	-0.2
2,874,112	+		GFF2829	0.70	-0.6
2,874,114	+		GFF2829	0.70	+1.0
2,874,114	+		GFF2829	0.70	+0.6
2,874,122	-		GFF2829	0.71	-0.4
2,874,125	+		GFF2829	0.71	-0.8
2,874,134	+		GFF2829	0.72	+0.2
2,874,134	+		GFF2829	0.72	-1.5
2,874,142	-		GFF2829	0.73	+0.3
2,874,179	+		GFF2829	0.76	+0.2
2,874,193	-		GFF2829	0.77	-0.5
2,874,198	-		GFF2829	0.78	+0.4
2,874,216	-		GFF2829	0.80	-1.3
2,874,216	-		GFF2829	0.80	+0.7
2,874,250	-		GFF2829	0.83	+0.7