Strain Fitness in Sphingobium sp. HT1-2 around GFF2822

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,862,856	-				-0.6
2,862,856	-				-0.6
2,862,861	-				-2.1
2,862,925	-				-0.3
2,862,925	-				+0.1
2,862,942	-				-1.2
2,862,947	-				-1.2
2,862,952	-				-1.5
2,862,968	-				-0.0
2,862,968	-				-0.3
2,862,973	+				+0.2
2,862,997	+		GFF2821	0.11	-1.8
2,863,005	-		GFF2821	0.12	+1.7
2,863,044	+		GFF2821	0.16	+1.0
2,863,067	+		GFF2821	0.18	+0.7
2,863,067	+		GFF2821	0.18	+0.6
2,863,067	+		GFF2821	0.18	-0.3
2,863,115	-		GFF2821	0.23	-0.1
2,863,126	-		GFF2821	0.25	+0.7
2,863,126	-		GFF2821	0.25	-0.3
2,863,133	+		GFF2821	0.25	-0.1
2,863,133	+		GFF2821	0.25	-0.3
2,863,161	-		GFF2821	0.28	+1.4
2,863,170	+		GFF2821	0.29	-1.4
2,863,232	+		GFF2821	0.36	+0.3
2,863,242	+		GFF2821	0.37	-1.0
2,863,242	+		GFF2821	0.37	+0.2
2,863,243	+		GFF2821	0.37	-1.3
2,863,243	+		GFF2821	0.37	-0.5
2,863,251	-		GFF2821	0.37	+0.4
2,863,251	-		GFF2821	0.37	+1.1
2,863,277	-		GFF2821	0.40	+0.2
2,863,300	-		GFF2821	0.43	-0.2
2,863,309	-		GFF2821	0.43	-0.2
2,863,309	-		GFF2821	0.43	-0.7
2,863,326	+		GFF2821	0.45	-0.5
2,863,326	+		GFF2821	0.45	-0.8
2,863,334	-		GFF2821	0.46	-0.9
2,863,355	-		GFF2821	0.48	+0.9
2,863,437	-		GFF2821	0.57	+0.5
2,863,442	+		GFF2821	0.57	-0.4
2,863,452	-		GFF2821	0.58	-0.3
2,863,497	+		GFF2821	0.63	-0.3
2,863,502	+		GFF2821	0.63	+0.1
2,863,505	-		GFF2821	0.64	+1.5
2,863,510	-		GFF2821	0.64	-1.0
2,863,510	-		GFF2821	0.64	+0.3
2,863,510	-		GFF2821	0.64	-0.2
2,863,515	-		GFF2821	0.65	-1.0
2,863,517	-		GFF2821	0.65	+0.5
2,863,519	+		GFF2821	0.65	-0.3
2,863,538	-		GFF2821	0.67	-1.5
2,863,538	-		GFF2821	0.67	+1.0
2,863,555	+		GFF2821	0.69	-2.5
2,863,579	+		GFF2821	0.71	+1.1
2,863,584	+		GFF2821	0.72	-0.9
2,863,589	+		GFF2821	0.72	+0.4
2,863,605	+		GFF2821	0.74	-0.3
2,863,613	-		GFF2821	0.75	-1.5
2,863,613	-		GFF2821	0.75	+1.7
2,863,624	+		GFF2821	0.76	+0.9
2,863,640	+		GFF2821	0.78	-1.8
2,863,655	-		GFF2821	0.79	+0.1
2,863,655	-		GFF2821	0.79	-0.3
2,863,655	-		GFF2821	0.79	+0.2
2,863,655	-		GFF2821	0.79	+0.3
2,863,674	-		GFF2821	0.81	-0.0
2,863,685	+		GFF2821	0.82	-1.5
2,863,687	+		GFF2821	0.82	-1.2
2,863,687	+		GFF2821	0.82	-2.4
2,863,692	+		GFF2821	0.83	-0.5
2,863,692	+		GFF2821	0.83	-0.2
2,863,692	+		GFF2821	0.83	+0.2
2,863,692	+		GFF2821	0.83	-0.7
2,863,695	-		GFF2821	0.83	+0.3
2,863,697	+		GFF2821	0.83	-0.1
2,863,697	+		GFF2821	0.83	-1.7
2,863,697	+		GFF2821	0.83	-0.5
2,863,697	+		GFF2821	0.83	+0.4
2,863,697	+		GFF2821	0.83	-1.0
2,863,697	+		GFF2821	0.83	-0.8
2,863,700	-		GFF2821	0.84	-0.8
2,863,705	-		GFF2821	0.84	+1.0
2,863,705	-		GFF2821	0.84	+0.0
2,863,705	-		GFF2821	0.84	-0.6
2,863,705	-		GFF2821	0.84	-0.4
2,863,705	-		GFF2821	0.84	-0.5
2,863,734	+		GFF2821	0.87	+0.3
2,863,756	+		GFF2821	0.90	-0.2
2,863,773	+				-1.1
2,863,778	+				-0.7
2,863,778	+				-0.7
2,863,778	+				+0.2
2,863,778	+				-1.4
2,863,778	+				+0.2
2,863,778	+				-0.1
2,863,781	-				+0.3
2,863,783	+				-1.3
2,863,786	-				-0.5
2,863,786	-				-2.0
2,863,786	-				+0.6
2,863,786	-				+0.8
2,863,788	+				-0.0
2,863,799	+				-1.3
2,863,804	+				+0.7
2,863,804	+				-0.0
2,863,812	-				+0.8
2,863,812	-				-2.7
2,863,812	-				+0.7
2,863,814	+				-1.0
2,863,814	+				-1.3
2,863,822	-				-0.6
2,863,822	-				+0.4
2,863,822	-				-0.7
2,863,835	+				+0.3
2,863,846	-				-0.7
2,863,852	+				-1.3
2,863,860	-				+0.7
2,863,869	+				-0.1
2,863,870	-				-1.7
2,863,875	-				-1.0
2,863,875	-				-0.7
2,863,875	-				+0.7
2,863,877	-				-0.9
2,863,877	-				-1.1
2,863,877	-				-1.1
2,863,877	-				-0.1
2,863,886	+				-0.8
2,863,887	-				-0.1
2,863,891	+				-1.7
2,863,910	+				+0.3
2,863,918	-				+0.1
2,863,918	-				-0.7
2,863,918	-				+0.6
2,863,918	-				-0.1
2,863,934	+		GFF2822	0.10	-1.5
2,863,934	+		GFF2822	0.10	-0.3
2,863,960	+		GFF2822	0.13	+0.5
2,863,960	+		GFF2822	0.13	-1.0
2,863,960	+		GFF2822	0.13	+0.1
2,863,960	+		GFF2822	0.13	-2.6
2,863,960	+		GFF2822	0.13	-0.4
2,863,960	+		GFF2822	0.13	+0.1
2,863,968	-		GFF2822	0.14	-1.5
2,863,968	-		GFF2822	0.14	-1.0
2,863,968	-		GFF2822	0.14	+0.7
2,863,974	+		GFF2822	0.15	-0.3
2,863,974	+		GFF2822	0.15	+1.2
2,863,974	+		GFF2822	0.15	-0.3
2,863,974	+		GFF2822	0.15	-1.3
2,863,977	-		GFF2822	0.16	-1.5
2,863,982	-		GFF2822	0.16	-0.0
2,863,982	-		GFF2822	0.16	-2.0
2,863,982	-		GFF2822	0.16	-0.5
2,863,982	-		GFF2822	0.16	-1.0
2,863,987	-		GFF2822	0.17	-0.4
2,863,987	-		GFF2822	0.17	-0.1
2,863,987	-		GFF2822	0.17	-1.8
2,863,993	-		GFF2822	0.18	-0.7
2,863,995	+		GFF2822	0.18	-1.0
2,864,002	+		GFF2822	0.19	+0.1
2,864,010	-		GFF2822	0.20	+0.7
2,864,030	+		GFF2822	0.22	+0.6
2,864,036	+		GFF2822	0.23	+1.4
2,864,036	+		GFF2822	0.23	+1.5
2,864,047	+		GFF2822	0.24	+0.1
2,864,047	+		GFF2822	0.24	+0.4
2,864,050	-		GFF2822	0.25	-0.9
2,864,052	+		GFF2822	0.25	-0.0
2,864,060	-		GFF2822	0.26	+0.7
2,864,060	-		GFF2822	0.26	-1.1
2,864,060	-		GFF2822	0.26	+1.0
2,864,075	-		GFF2822	0.28	-0.5
2,864,101	+		GFF2822	0.31	-0.0
2,864,152	+		GFF2822	0.38	+1.0
2,864,152	+		GFF2822	0.38	-2.1
2,864,152	+		GFF2822	0.38	-0.3
2,864,152	+		GFF2822	0.38	-0.8
2,864,152	+		GFF2822	0.38	-1.3
2,864,160	-		GFF2822	0.39	-0.1
2,864,160	-		GFF2822	0.39	-0.2
2,864,160	-		GFF2822	0.39	-0.2
2,864,160	-		GFF2822	0.39	+0.4
2,864,160	-		GFF2822	0.39	-1.3
2,864,160	-		GFF2822	0.39	-1.9
2,864,232	+		GFF2822	0.48	-1.0
2,864,241	-		GFF2822	0.49	-2.8
2,864,241	-		GFF2822	0.49	-1.8
2,864,244	+		GFF2822	0.49	+1.6
2,864,244	+		GFF2822	0.49	+0.4
2,864,244	+		GFF2822	0.49	-0.0
2,864,252	-		GFF2822	0.50	-1.8
2,864,265	+		GFF2822	0.52	+0.3
2,864,270	+		GFF2822	0.52	+0.2
2,864,270	+		GFF2822	0.52	+0.3
2,864,277	+		GFF2822	0.53	+0.2
2,864,277	-		GFF2822	0.53	-0.3
2,864,278	-		GFF2822	0.53	-1.6
2,864,278	-		GFF2822	0.53	-1.1
2,864,278	-		GFF2822	0.53	+0.4
2,864,278	-		GFF2822	0.53	-0.2
2,864,278	-		GFF2822	0.53	-1.2
2,864,278	-		GFF2822	0.53	-0.2
2,864,287	+		GFF2822	0.55	-2.0
2,864,295	+		GFF2822	0.56	-1.8
2,864,295	+		GFF2822	0.56	-1.5
2,864,295	+		GFF2822	0.56	-0.2
2,864,295	+		GFF2822	0.56	-0.7
2,864,295	+		GFF2822	0.56	-1.3
2,864,295	+		GFF2822	0.56	-0.5
2,864,295	+		GFF2822	0.56	-0.1
2,864,295	+		GFF2822	0.56	+0.1
2,864,295	+		GFF2822	0.56	-1.6
2,864,295	+		GFF2822	0.56	-0.2
2,864,295	+		GFF2822	0.56	-1.1
2,864,295	+		GFF2822	0.56	-2.2
2,864,295	+		GFF2822	0.56	-1.0
2,864,303	-		GFF2822	0.57	-0.1
2,864,303	-		GFF2822	0.57	+0.8
2,864,303	-		GFF2822	0.57	+0.3
2,864,303	-		GFF2822	0.57	-1.4
2,864,303	-		GFF2822	0.57	-0.2
2,864,303	-		GFF2822	0.57	-1.6
2,864,303	-		GFF2822	0.57	-0.0
2,864,303	-		GFF2822	0.57	-0.3
2,864,303	-		GFF2822	0.57	+0.5
2,864,303	-		GFF2822	0.57	+0.1
2,864,303	-		GFF2822	0.57	-1.4
2,864,303	-		GFF2822	0.57	+0.6
2,864,305	+		GFF2822	0.57	-0.3
2,864,305	+		GFF2822	0.57	-0.2
2,864,305	-		GFF2822	0.57	-1.8
2,864,305	-		GFF2822	0.57	-0.0
2,864,305	-		GFF2822	0.57	-0.2
2,864,313	-		GFF2822	0.58	-1.7
2,864,333	+		GFF2822	0.60	+0.3
2,864,343	+		GFF2822	0.62	+0.2
2,864,353	+		GFF2822	0.63	+1.1
2,864,353	+		GFF2822	0.63	-0.8
2,864,389	+		GFF2822	0.67	-0.8
2,864,402	-		GFF2822	0.69	-0.9
2,864,405	+		GFF2822	0.69	-0.4
2,864,415	+		GFF2822	0.71	-0.1
2,864,419	-		GFF2822	0.71	-0.3
2,864,425	+		GFF2822	0.72	-0.0
2,864,433	-		GFF2822	0.73	+0.9
2,864,443	+		GFF2822	0.74	-0.2
2,864,443	+		GFF2822	0.74	+0.1
2,864,448	+		GFF2822	0.75	+1.6
2,864,454	+		GFF2822	0.76	-0.7
2,864,454	+		GFF2822	0.76	-1.3
2,864,454	+		GFF2822	0.76	+0.7
2,864,456	-		GFF2822	0.76	-0.2
2,864,456	-		GFF2822	0.76	+0.7
2,864,462	-		GFF2822	0.77	+0.5
2,864,462	-		GFF2822	0.77	-1.5
2,864,462	-		GFF2822	0.77	-1.5
2,864,462	-		GFF2822	0.77	+0.5
2,864,462	-		GFF2822	0.77	-2.1
2,864,462	-		GFF2822	0.77	+0.2
2,864,464	-		GFF2822	0.77	-0.0
2,864,469	+		GFF2822	0.77	+0.3
2,864,472	+		GFF2822	0.78	+0.4
2,864,475	-		GFF2822	0.78	+0.1
2,864,480	+		GFF2822	0.79	-1.3
2,864,483	-		GFF2822	0.79	-0.8
2,864,486	+		GFF2822	0.80	-0.8
2,864,486	+		GFF2822	0.80	-1.3
2,864,490	-		GFF2822	0.80	-1.4
2,864,494	-		GFF2822	0.81	+0.3
2,864,494	-		GFF2822	0.81	-1.5
2,864,535	-		GFF2822	0.86	+1.2
2,864,547	+		GFF2822	0.87	+0.3
2,864,547	+		GFF2822	0.87	-0.6
2,864,550	+		GFF2822	0.88	-1.0
2,864,552	+		GFF2822	0.88	-0.7
2,864,552	+		GFF2822	0.88	+0.1
2,864,552	+		GFF2822	0.88	-0.9
2,864,552	+		GFF2822	0.88	+0.2
2,864,552	+		GFF2822	0.88	-1.8
2,864,555	-		GFF2822	0.88	-0.7
2,864,560	-		GFF2822	0.89	-0.2
2,864,560	-		GFF2822	0.89	+0.3
2,864,560	-		GFF2822	0.89	-0.7
2,864,560	-		GFF2822	0.89	-1.5
2,864,560	-		GFF2822	0.89	-1.3
2,864,565	-		GFF2822	0.90	-0.8
2,864,565	-		GFF2822	0.90	-2.0
2,864,570	-				-1.7
2,864,583	-				-0.1
2,864,596	-				+1.0
2,864,634	-				-0.2
2,864,669	-				+0.3
2,864,669	-				-0.7
2,864,687	-				-0.7
2,864,691	+				+0.2
2,864,696	+				-0.3
2,864,696	+				-0.8
2,864,697	-				+1.3
2,864,706	+				-0.2
2,864,710	+				+1.0
2,864,714	-				+0.4
2,864,718	-				-0.9
2,864,753	+		GFF2823	0.12	+0.2
2,864,753	+		GFF2823	0.12	+0.2
2,864,763	+		GFF2823	0.13	-0.1
2,864,781	+		GFF2823	0.15	-1.2
2,864,786	+		GFF2823	0.16	-2.2
2,864,802	+		GFF2823	0.18	-1.0
2,864,804	-		GFF2823	0.18	+0.7
2,864,819	+		GFF2823	0.20	-3.0
2,864,819	+		GFF2823	0.20	-2.3
2,864,827	-		GFF2823	0.21	-1.1
2,864,827	-		GFF2823	0.21	+0.3
2,864,833	+		GFF2823	0.22	-2.0
2,864,833	+		GFF2823	0.22	-1.2
2,864,891	+		GFF2823	0.29	+0.5
2,864,904	-		GFF2823	0.31	-0.7
2,864,910	+		GFF2823	0.31	-1.0
2,864,910	-		GFF2823	0.31	-1.3
2,864,951	+		GFF2823	0.37	+0.4
2,864,957	+		GFF2823	0.37	+0.8
2,864,957	+		GFF2823	0.37	-2.3
2,864,957	+		GFF2823	0.37	-0.1
2,864,957	+		GFF2823	0.37	+0.2
2,864,957	+		GFF2823	0.37	-0.3
2,864,957	+		GFF2823	0.37	-2.4
2,864,957	+		GFF2823	0.37	-1.9
2,864,957	+		GFF2823	0.37	+0.1
2,864,961	+		GFF2823	0.38	+1.1
2,864,965	-		GFF2823	0.38	-0.8
2,864,965	-		GFF2823	0.38	-1.1
2,864,965	-		GFF2823	0.38	-1.0
2,864,981	-		GFF2823	0.40	+0.1
2,864,983	+		GFF2823	0.41	+0.3
2,864,992	-		GFF2823	0.42	-0.8
2,865,014	+		GFF2823	0.44	-1.0
2,865,014	+		GFF2823	0.44	-0.8
2,865,016	+		GFF2823	0.45	-1.3
2,865,016	+		GFF2823	0.45	+0.7
2,865,024	-		GFF2823	0.46	-2.8
2,865,024	-		GFF2823	0.46	+0.1
2,865,024	-		GFF2823	0.46	-1.5
2,865,046	+		GFF2823	0.48	-1.3
2,865,049	-		GFF2823	0.49	-0.8
2,865,063	+		GFF2823	0.50	-0.8
2,865,073	+		GFF2823	0.52	+0.7
2,865,081	-		GFF2823	0.53	-2.9
2,865,081	-		GFF2823	0.53	-2.5
2,865,081	-		GFF2823	0.53	+0.5
2,865,081	-		GFF2823	0.53	+0.6
2,865,081	-		GFF2823	0.53	-1.8
2,865,081	-		GFF2823	0.53	-1.9
2,865,093	-		GFF2823	0.54	-3.3
2,865,134	-		GFF2823	0.59	-0.1
2,865,139	-		GFF2823	0.60	-1.4
2,865,144	-		GFF2823	0.60	+0.1
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