Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF26 and GFF27 overlap by 4 nucleotides GFF27 and GFF28 are separated by 59 nucleotides GFF28 and GFF29 are separated by 330 nucleotides GFF29 and GFF30 overlap by 1 nucleotides
GFF26 - hypothetical protein, at 18,011 to 24,946
GFF26
GFF27 - hypothetical protein, at 24,943 to 25,254
GFF27
GFF28 - hypothetical protein, at 25,314 to 25,427
GFF28
GFF29 - hypothetical protein, at 25,758 to 26,288
GFF29
GFF30 - hypothetical protein, at 26,288 to 26,803
GFF30
Position (kb) 25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.383 kb on - strand at 24.447 kb on + strand at 24.447 kb on + strand at 24.448 kb on - strand at 24.503 kb on + strand at 24.511 kb on - strand at 24.511 kb on - strand at 24.548 kb on + strand at 24.548 kb on + strand at 24.556 kb on - strand at 24.567 kb on - strand at 24.574 kb on + strand at 24.575 kb on + strand at 24.577 kb on - strand at 24.604 kb on - strand at 24.651 kb on - strand at 24.689 kb on + strand at 24.697 kb on - strand at 24.720 kb on + strand at 24.800 kb on + strand at 24.801 kb on + strand at 24.808 kb on - strand at 24.811 kb on + strand at 24.813 kb on + strand at 24.814 kb on - strand at 24.829 kb on + strand at 24.829 kb on + strand at 24.829 kb on + strand at 24.829 kb on + strand at 24.829 kb on + strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.832 kb on - strand at 24.837 kb on - strand at 24.837 kb on - strand at 24.837 kb on - strand at 24.847 kb on + strand at 24.871 kb on - strand at 24.881 kb on - strand at 24.909 kb on + strand at 24.917 kb on - strand at 24.926 kb on + strand at 24.928 kb on + strand at 24.936 kb on - strand at 24.936 kb on - strand at 24.936 kb on - strand at 24.936 kb on - strand at 24.990 kb on + strand, within GFF27 at 25.021 kb on + strand, within GFF27 at 25.075 kb on + strand, within GFF27 at 25.075 kb on + strand, within GFF27 at 25.075 kb on + strand, within GFF27 at 25.101 kb on - strand, within GFF27 at 25.106 kb on + strand, within GFF27 at 25.111 kb on + strand, within GFF27 at 25.111 kb on + strand, within GFF27 at 25.116 kb on + strand, within GFF27 at 25.122 kb on - strand, within GFF27 at 25.122 kb on - strand, within GFF27 at 25.122 kb on - strand, within GFF27 at 25.124 kb on + strand, within GFF27 at 25.124 kb on + strand, within GFF27 at 25.124 kb on - strand, within GFF27 at 25.143 kb on + strand, within GFF27 at 25.151 kb on - strand, within GFF27 at 25.220 kb on + strand, within GFF27 at 25.236 kb on + strand at 25.261 kb on - strand at 25.262 kb on + strand at 25.270 kb on - strand at 25.371 kb on + strand, within GFF28 at 25.405 kb on + strand, within GFF28 at 25.405 kb on + strand, within GFF28 at 25.415 kb on + strand, within GFF28 at 25.415 kb on + strand, within GFF28 at 25.419 kb on + strand at 25.419 kb on + strand at 25.420 kb on + strand at 25.424 kb on + strand at 25.424 kb on + strand at 25.428 kb on - strand at 25.428 kb on - strand at 25.432 kb on - strand at 25.433 kb on - strand at 25.433 kb on - strand at 25.437 kb on - strand at 25.437 kb on - strand at 25.480 kb on + strand at 25.492 kb on + strand at 25.521 kb on + strand at 25.524 kb on + strand at 25.524 kb on - strand at 25.538 kb on + strand at 25.538 kb on + strand at 25.539 kb on - strand at 25.557 kb on + strand at 25.578 kb on - strand at 25.578 kb on - strand at 25.594 kb on + strand at 25.614 kb on + strand at 25.614 kb on + strand at 25.614 kb on + strand at 25.622 kb on - strand at 25.622 kb on - strand at 25.634 kb on + strand at 25.644 kb on - strand at 25.644 kb on - strand at 25.775 kb on + strand at 25.783 kb on - strand at 25.818 kb on - strand, within GFF29 at 25.831 kb on - strand, within GFF29 at 25.841 kb on + strand, within GFF29 at 25.844 kb on + strand, within GFF29 at 25.849 kb on + strand, within GFF29 at 25.849 kb on + strand, within GFF29 at 25.857 kb on - strand, within GFF29 at 25.857 kb on - strand, within GFF29 at 25.857 kb on - strand, within GFF29 at 25.857 kb on - strand, within GFF29 at 25.857 kb on - strand, within GFF29 at 25.857 kb on - strand, within GFF29 at 25.892 kb on + strand, within GFF29 at 25.892 kb on + strand, within GFF29 at 25.892 kb on + strand, within GFF29 at 25.900 kb on - strand, within GFF29 at 25.934 kb on + strand, within GFF29 at 25.939 kb on + strand, within GFF29 at 25.939 kb on + strand, within GFF29 at 25.939 kb on + strand, within GFF29 at 25.947 kb on - strand, within GFF29 at 25.947 kb on - strand, within GFF29 at 25.947 kb on - strand, within GFF29 at 25.947 kb on - strand, within GFF29 at 25.947 kb on - strand, within GFF29 at 25.947 kb on - strand, within GFF29 at 25.949 kb on + strand, within GFF29 at 25.949 kb on + strand, within GFF29 at 25.949 kb on + strand, within GFF29 at 25.949 kb on + strand, within GFF29 at 25.952 kb on - strand, within GFF29 at 25.957 kb on - strand, within GFF29 at 25.959 kb on + strand, within GFF29 at 25.965 kb on + strand, within GFF29 at 25.981 kb on + strand, within GFF29 at 26.004 kb on - strand, within GFF29 at 26.004 kb on - strand, within GFF29 at 26.006 kb on + strand, within GFF29 at 26.025 kb on + strand, within GFF29 at 26.025 kb on + strand, within GFF29 at 26.033 kb on - strand, within GFF29 at 26.033 kb on - strand, within GFF29 at 26.033 kb on - strand, within GFF29 at 26.073 kb on - strand, within GFF29 at 26.088 kb on + strand, within GFF29 at 26.098 kb on - strand, within GFF29 at 26.103 kb on - strand, within GFF29 at 26.108 kb on + strand, within GFF29 at 26.149 kb on - strand, within GFF29 at 26.172 kb on + strand, within GFF29 at 26.172 kb on + strand, within GFF29 at 26.172 kb on + strand, within GFF29 at 26.172 kb on + strand, within GFF29 at 26.180 kb on - strand, within GFF29 at 26.180 kb on - strand, within GFF29 at 26.180 kb on - strand, within GFF29 at 26.211 kb on + strand, within GFF29 at 26.216 kb on + strand, within GFF29 at 26.219 kb on - strand, within GFF29 at 26.219 kb on - strand, within GFF29 at 26.219 kb on - strand, within GFF29 at 26.246 kb on + strand at 26.254 kb on - strand at 26.254 kb on - strand at 26.263 kb on - strand at 26.278 kb on - strand at 26.278 kb on - strand at 26.278 kb on - strand at 26.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 24,383 - -0.2 24,447 + -0.3 24,447 + -0.6 24,448 - +0.3 24,503 + +0.9 24,511 - +0.6 24,511 - +0.1 24,548 + +1.3 24,548 + -0.3 24,556 - -0.8 24,567 - -0.3 24,574 + +0.4 24,575 + -0.6 24,577 - -1.6 24,604 - -2.0 24,651 - +1.5 24,689 + +0.7 24,697 - +0.1 24,720 + -0.7 24,800 + +0.8 24,801 + -0.5 24,808 - -0.1 24,811 + +0.0 24,813 + -0.4 24,814 - +0.8 24,829 + -1.7 24,829 + +1.1 24,829 + -1.7 24,829 + +0.1 24,829 + +0.6 24,832 - +0.2 24,832 - -0.1 24,832 - -0.2 24,837 - -0.7 24,837 - -0.5 24,837 - +0.4 24,847 + -0.9 24,871 - +0.1 24,881 - +0.5 24,909 + -0.4 24,917 - -1.3 24,926 + +0.3 24,928 + -0.1 24,936 - -1.2 24,936 - -0.4 24,936 - -0.4 24,936 - -0.4 24,990 + GFF27 0.15 +0.4 25,021 + GFF27 0.25 +0.7 25,075 + GFF27 0.42 -0.8 25,075 + GFF27 0.42 -0.7 25,075 + GFF27 0.42 +0.2 25,101 - GFF27 0.51 -1.7 25,106 + GFF27 0.52 -0.2 25,111 + GFF27 0.54 -0.2 25,111 + GFF27 0.54 +0.5 25,116 + GFF27 0.55 -1.8 25,122 - GFF27 0.57 -0.2 25,122 - GFF27 0.57 -0.0 25,122 - GFF27 0.57 +0.4 25,124 + GFF27 0.58 +0.6 25,124 + GFF27 0.58 +0.3 25,124 - GFF27 0.58 -0.4 25,143 + GFF27 0.64 +0.2 25,151 - GFF27 0.67 +0.3 25,220 + GFF27 0.89 +0.4 25,236 + -1.7 25,261 - -0.3 25,262 + -0.8 25,270 - +0.7 25,371 + GFF28 0.50 +0.3 25,405 + GFF28 0.80 +0.8 25,405 + GFF28 0.80 -0.1 25,415 + GFF28 0.89 +0.1 25,415 + GFF28 0.89 -2.0 25,419 + +0.5 25,419 + -2.5 25,420 + -0.2 25,424 + +0.5 25,424 + -0.7 25,428 - -0.2 25,428 - -0.3 25,432 - -0.6 25,433 - +1.2 25,433 - +1.0 25,437 - -0.2 25,437 - -0.9 25,480 + +0.2 25,492 + +0.1 25,521 + -1.6 25,524 + -1.7 25,524 - -0.6 25,538 + -0.4 25,538 + +1.2 25,539 - +0.5 25,557 + +0.4 25,578 - +0.7 25,578 - -1.4 25,594 + -1.4 25,614 + +0.8 25,614 + -1.4 25,614 + +0.8 25,622 - -0.2 25,622 - -0.5 25,634 + +0.5 25,644 - -1.9 25,644 - -0.1 25,775 + +0.1 25,783 - -0.3 25,818 - GFF29 0.11 +1.4 25,831 - GFF29 0.14 -0.0 25,841 + GFF29 0.16 -0.2 25,844 + GFF29 0.16 -0.4 25,849 + GFF29 0.17 -0.4 25,849 + GFF29 0.17 +0.4 25,857 - GFF29 0.19 +0.3 25,857 - GFF29 0.19 -0.4 25,857 - GFF29 0.19 -0.8 25,857 - GFF29 0.19 +0.9 25,857 - GFF29 0.19 +0.2 25,857 - GFF29 0.19 +0.4 25,892 + GFF29 0.25 +1.6 25,892 + GFF29 0.25 -0.4 25,892 + GFF29 0.25 +0.1 25,900 - GFF29 0.27 -1.5 25,934 + GFF29 0.33 -1.8 25,939 + GFF29 0.34 -1.8 25,939 + GFF29 0.34 -0.3 25,939 + GFF29 0.34 +1.2 25,947 - GFF29 0.36 +0.2 25,947 - GFF29 0.36 +1.7 25,947 - GFF29 0.36 -0.5 25,947 - GFF29 0.36 -3.4 25,947 - GFF29 0.36 -1.1 25,947 - GFF29 0.36 +0.4 25,949 + GFF29 0.36 +1.4 25,949 + GFF29 0.36 -0.9 25,949 + GFF29 0.36 -0.9 25,949 + GFF29 0.36 +0.2 25,952 - GFF29 0.37 -0.7 25,957 - GFF29 0.37 -0.2 25,959 + GFF29 0.38 +0.2 25,965 + GFF29 0.39 -1.1 25,981 + GFF29 0.42 -1.9 26,004 - GFF29 0.46 -1.3 26,004 - GFF29 0.46 -0.2 26,006 + GFF29 0.47 -0.2 26,025 + GFF29 0.50 -1.3 26,025 + GFF29 0.50 -0.1 26,033 - GFF29 0.52 +0.6 26,033 - GFF29 0.52 +0.1 26,033 - GFF29 0.52 -1.0 26,073 - GFF29 0.59 +0.3 26,088 + GFF29 0.62 +0.6 26,098 - GFF29 0.64 +0.6 26,103 - GFF29 0.65 -1.6 26,108 + GFF29 0.66 +0.6 26,149 - GFF29 0.74 +0.3 26,172 + GFF29 0.78 +2.4 26,172 + GFF29 0.78 -0.6 26,172 + GFF29 0.78 -0.6 26,172 + GFF29 0.78 -1.2 26,180 - GFF29 0.79 -0.9 26,180 - GFF29 0.79 +1.1 26,180 - GFF29 0.79 -1.6 26,211 + GFF29 0.85 +0.2 26,216 + GFF29 0.86 +0.1 26,219 - GFF29 0.87 +0.9 26,219 - GFF29 0.87 +0.9 26,219 - GFF29 0.87 +0.3 26,246 + +1.1 26,254 - +1.0 26,254 - +0.3 26,263 - +0.8 26,278 - -0.4 26,278 - -0.5 26,278 - -0.4 26,278 - +0.1
Or see this region's nucleotide sequence