Strain Fitness in Sphingobium sp. HT1-2 around GFF2798

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,833,025	+		GFF2797	0.25	-1.4
2,833,030	+		GFF2797	0.26	-1.2
2,833,038	-		GFF2797	0.26	-1.8
2,833,038	-		GFF2797	0.26	-0.1
2,833,040	+		GFF2797	0.26	+0.1
2,833,048	-		GFF2797	0.27	+0.2
2,833,086	+		GFF2797	0.30	+0.2
2,833,094	-		GFF2797	0.30	+0.2
2,833,094	-		GFF2797	0.30	-1.1
2,833,099	+		GFF2797	0.31	-1.2
2,833,099	+		GFF2797	0.31	-1.6
2,833,099	+		GFF2797	0.31	-2.2
2,833,099	+		GFF2797	0.31	+0.0
2,833,099	+		GFF2797	0.31	-0.2
2,833,099	+		GFF2797	0.31	-0.1
2,833,099	+		GFF2797	0.31	+0.6
2,833,099	+		GFF2797	0.31	-0.4
2,833,099	+		GFF2797	0.31	-0.5
2,833,099	+		GFF2797	0.31	+0.7
2,833,099	+		GFF2797	0.31	+0.3
2,833,099	+		GFF2797	0.31	-1.6
2,833,099	+		GFF2797	0.31	-0.7
2,833,099	+		GFF2797	0.31	-1.4
2,833,099	+		GFF2797	0.31	+1.0
2,833,099	+		GFF2797	0.31	-1.1
2,833,099	+		GFF2797	0.31	+0.7
2,833,099	+		GFF2797	0.31	+0.9
2,833,099	+		GFF2797	0.31	-0.2
2,833,099	+		GFF2797	0.31	-0.0
2,833,099	+		GFF2797	0.31	-0.8
2,833,107	-		GFF2797	0.31	-0.4
2,833,107	-		GFF2797	0.31	+0.2
2,833,107	-		GFF2797	0.31	-0.1
2,833,107	-		GFF2797	0.31	-0.2
2,833,107	-		GFF2797	0.31	-1.2
2,833,107	-		GFF2797	0.31	+0.4
2,833,107	-		GFF2797	0.31	-0.6
2,833,107	-		GFF2797	0.31	-0.1
2,833,107	-		GFF2797	0.31	-0.7
2,833,107	-		GFF2797	0.31	+0.3
2,833,107	-		GFF2797	0.31	-0.4
2,833,107	-		GFF2797	0.31	-0.5
2,833,107	-		GFF2797	0.31	-0.8
2,833,107	-		GFF2797	0.31	-2.2
2,833,107	-		GFF2797	0.31	-0.5
2,833,107	-		GFF2797	0.31	+1.1
2,833,107	-		GFF2797	0.31	-0.5
2,833,107	-		GFF2797	0.31	-0.8
2,833,107	-		GFF2797	0.31	+0.1
2,833,107	-		GFF2797	0.31	-1.1
2,833,107	-		GFF2797	0.31	-1.9
2,833,114	+		GFF2797	0.32	-0.8
2,833,117	+		GFF2797	0.32	-1.5
2,833,117	+		GFF2797	0.32	-0.5
2,833,125	-		GFF2797	0.33	-1.3
2,833,151	+		GFF2797	0.35	+1.1
2,833,169	-		GFF2797	0.36	+0.5
2,833,200	+		GFF2797	0.38	-2.3
2,833,208	-		GFF2797	0.39	-1.1
2,833,208	-		GFF2797	0.39	-0.2
2,833,227	+		GFF2797	0.40	-2.4
2,833,235	+		GFF2797	0.41	-1.1
2,833,242	-		GFF2797	0.42	+0.2
2,833,247	-		GFF2797	0.42	+0.3
2,833,250	+		GFF2797	0.42	-1.2
2,833,258	-		GFF2797	0.43	-0.2
2,833,258	-		GFF2797	0.43	-0.2
2,833,258	-		GFF2797	0.43	-1.8
2,833,262	+		GFF2797	0.43	+0.6
2,833,267	+		GFF2797	0.43	+0.2
2,833,267	+		GFF2797	0.43	-0.8
2,833,267	+		GFF2797	0.43	-0.4
2,833,267	+		GFF2797	0.43	-0.1
2,833,267	+		GFF2797	0.43	+0.4
2,833,267	+		GFF2797	0.43	-0.5
2,833,267	+		GFF2797	0.43	-0.9
2,833,267	+		GFF2797	0.43	+0.5
2,833,267	+		GFF2797	0.43	+0.2
2,833,267	+		GFF2797	0.43	-0.1
2,833,270	-		GFF2797	0.44	-1.1
2,833,275	-		GFF2797	0.44	+0.4
2,833,275	-		GFF2797	0.44	-0.2
2,833,275	-		GFF2797	0.44	-0.2
2,833,275	-		GFF2797	0.44	-0.9
2,833,275	-		GFF2797	0.44	-1.4
2,833,275	-		GFF2797	0.44	-0.2
2,833,275	-		GFF2797	0.44	+0.4
2,833,275	-		GFF2797	0.44	-0.3
2,833,290	+		GFF2797	0.45	-0.3
2,833,298	-		GFF2797	0.46	+1.1
2,833,303	+		GFF2797	0.46	+0.6
2,833,309	+		GFF2797	0.47	-1.4
2,833,333	-		GFF2797	0.48	+0.1
2,833,365	-		GFF2797	0.51	-0.7
2,833,366	+		GFF2797	0.51	+0.4
2,833,397	+		GFF2797	0.53	-0.4
2,833,397	+		GFF2797	0.53	+0.1
2,833,397	+		GFF2797	0.53	+0.6
2,833,397	+		GFF2797	0.53	-0.8
2,833,402	+		GFF2797	0.54	-0.1
2,833,402	+		GFF2797	0.54	+1.2
2,833,405	-		GFF2797	0.54	+0.6
2,833,405	-		GFF2797	0.54	-0.9
2,833,405	-		GFF2797	0.54	-1.2
2,833,407	+		GFF2797	0.54	+0.4
2,833,407	+		GFF2797	0.54	+0.3
2,833,407	+		GFF2797	0.54	-0.4
2,833,407	+		GFF2797	0.54	+0.8
2,833,407	+		GFF2797	0.54	-0.9
2,833,407	+		GFF2797	0.54	-1.0
2,833,407	+		GFF2797	0.54	-1.3
2,833,407	+		GFF2797	0.54	+0.1
2,833,407	+		GFF2797	0.54	-1.9
2,833,410	-		GFF2797	0.54	+0.7
2,833,410	-		GFF2797	0.54	+0.3
2,833,410	-		GFF2797	0.54	-1.3
2,833,410	-		GFF2797	0.54	-1.6
2,833,415	-		GFF2797	0.55	-2.0
2,833,415	-		GFF2797	0.55	-0.5
2,833,415	-		GFF2797	0.55	+0.6
2,833,415	-		GFF2797	0.55	+0.2
2,833,415	-		GFF2797	0.55	-0.7
2,833,415	-		GFF2797	0.55	+0.9
2,833,415	-		GFF2797	0.55	-1.0
2,833,415	-		GFF2797	0.55	-1.2
2,833,415	-		GFF2797	0.55	-0.6
2,833,415	-		GFF2797	0.55	-0.5
2,833,415	-		GFF2797	0.55	+0.1
2,833,415	-		GFF2797	0.55	+0.6
2,833,415	-		GFF2797	0.55	+0.7
2,833,429	-		GFF2797	0.56	+0.9
2,833,445	-		GFF2797	0.57	+0.9
2,833,451	+		GFF2797	0.57	-0.4
2,833,459	-		GFF2797	0.58	-0.1
2,833,459	-		GFF2797	0.58	-0.3
2,833,459	-		GFF2797	0.58	+0.1
2,833,459	-		GFF2797	0.58	-0.1
2,833,459	-		GFF2797	0.58	-0.3
2,833,466	+		GFF2797	0.58	-0.5
2,833,468	+		GFF2797	0.58	+0.6
2,833,476	-		GFF2797	0.59	-0.9
2,833,476	-		GFF2797	0.59	+0.7
2,833,476	-		GFF2797	0.59	-0.4
2,833,476	-		GFF2797	0.59	+0.4
2,833,494	-		GFF2797	0.60	-0.5
2,833,555	+		GFF2797	0.65	-0.3
2,833,555	-		GFF2797	0.65	+0.4
2,833,571	+		GFF2797	0.66	-0.4
2,833,581	+		GFF2797	0.67	-0.5
2,833,587	+		GFF2797	0.67	-1.6
2,833,589	-		GFF2797	0.68	-0.4
2,833,602	+		GFF2797	0.69	-0.1
2,833,613	+		GFF2797	0.69	+1.0
2,833,618	+		GFF2797	0.70	-2.7
2,833,626	-		GFF2797	0.70	-0.6
2,833,676	+		GFF2797	0.74	-1.1
2,833,717	-		GFF2797	0.77	-1.3
2,833,717	-		GFF2797	0.77	-1.2
2,833,725	-		GFF2797	0.78	+0.1
2,833,734	-		GFF2797	0.78	-0.4
2,833,740	-		GFF2797	0.79	-1.4
2,833,766	-		GFF2797	0.81	+0.3
2,833,766	-		GFF2797	0.81	+0.0
2,833,776	+		GFF2797	0.82	-1.3
2,833,782	+		GFF2797	0.82	-1.1
2,833,782	+		GFF2797	0.82	+0.2
2,833,805	+		GFF2797	0.84	+0.3
2,833,805	+		GFF2797	0.84	-1.2
2,833,806	+		GFF2797	0.84	-1.9
2,833,807	+		GFF2797	0.84	+1.3
2,833,810	-		GFF2797	0.84	-1.2
2,833,821	-		GFF2797	0.85	+0.3
2,833,822	+		GFF2797	0.85	+0.4
2,833,822	+		GFF2797	0.85	-0.1
2,833,825	-		GFF2797	0.85	-0.2
2,833,846	-		GFF2797	0.87	-0.4
2,833,849	+		GFF2797	0.87	+0.3
2,833,850	+		GFF2797	0.87	-1.0
2,833,857	-		GFF2797	0.88	+0.7
2,833,858	-		GFF2797	0.88	+0.8
2,833,858	-		GFF2797	0.88	+0.0
2,833,869	+		GFF2797	0.89	-0.5
2,833,871	+		GFF2797	0.89	+0.6
2,833,902	-				-1.0
2,833,903	+				-0.9
2,833,903	+				+0.3
2,833,908	+				-1.7
2,833,911	-				+0.3
2,833,911	-				-0.3
2,833,911	-				-0.6
2,833,911	-				-2.7
2,833,911	-				+0.8
2,833,911	-				-2.2
2,833,916	-				+0.2
2,833,927	+				-1.4
2,833,928	+				-1.0
2,833,950	+				-0.1
2,833,969	-				+0.8
2,833,969	-				+1.2
2,833,990	+				-0.0
2,833,990	+				-1.6
2,833,990	+				+0.1
2,833,998	-				+0.5
2,834,003	-				-0.7
2,834,036	-				+0.1
2,834,048	-				+0.1
2,834,052	-				+0.1
2,834,052	-				-0.4
2,834,056	+				+0.6
2,834,066	+				-0.4
2,834,066	+				+0.4
2,834,066	+				-1.4
2,834,066	+				+0.5
2,834,066	+				+0.2
2,834,066	+				-1.2
2,834,066	+				-1.6
2,834,066	+				+1.7
2,834,066	+				-0.7
2,834,066	+				-0.5
2,834,074	-				+0.7
2,834,074	-				-1.9
2,834,074	-				-1.0
2,834,074	-				-0.9
2,834,074	-				-0.3
2,834,079	-				-0.2
2,834,093	+		GFF2798	0.10	-2.3
2,834,096	-		GFF2798	0.11	-1.4
2,834,114	+		GFF2798	0.13	-1.9
2,834,114	+		GFF2798	0.13	-1.7
2,834,121	+		GFF2798	0.14	-0.3
2,834,127	-		GFF2798	0.15	-2.2
2,834,140	+		GFF2798	0.17	-2.5
2,834,148	-		GFF2798	0.18	-1.2
2,834,148	-		GFF2798	0.18	-0.4
2,834,148	-		GFF2798	0.18	-0.2
2,834,156	+		GFF2798	0.19	-1.3
2,834,170	-		GFF2798	0.21	+0.6
2,834,199	-		GFF2798	0.25	+0.5
2,834,199	-		GFF2798	0.25	+0.3
2,834,200	+		GFF2798	0.25	-1.5
2,834,244	+		GFF2798	0.31	-0.4
2,834,245	-		GFF2798	0.31	+1.3
2,834,278	+		GFF2798	0.35	-1.4
2,834,283	+		GFF2798	0.36	+0.0
2,834,291	-		GFF2798	0.37	-0.5
2,834,291	-		GFF2798	0.37	+0.0
2,834,305	+		GFF2798	0.39	-0.5
2,834,305	-		GFF2798	0.39	-1.4
2,834,311	-		GFF2798	0.40	+1.3
2,834,329	+		GFF2798	0.42	+0.1
2,834,329	+		GFF2798	0.42	-0.8
2,834,329	+		GFF2798	0.42	-0.6
2,834,337	-		GFF2798	0.43	-0.9
2,834,337	-		GFF2798	0.43	-0.6
2,834,340	+		GFF2798	0.44	+0.2
2,834,356	-		GFF2798	0.46	+0.6
2,834,381	+		GFF2798	0.49	-0.5
2,834,472	-		GFF2798	0.61	+0.2
2,834,476	+		GFF2798	0.62	+0.2
2,834,482	-		GFF2798	0.63	-1.9
2,834,509	+		GFF2798	0.66	-1.1
2,834,509	+		GFF2798	0.66	-0.3
2,834,517	-		GFF2798	0.67	-1.2
2,834,539	-		GFF2798	0.70	-0.9
2,834,541	+		GFF2798	0.71	-0.4
2,834,541	+		GFF2798	0.71	-1.3
2,834,541	+		GFF2798	0.71	+0.0
2,834,574	+		GFF2798	0.75	+0.5
2,834,574	+		GFF2798	0.75	-0.4
2,834,578	+		GFF2798	0.76	-0.2
2,834,596	+		GFF2798	0.78	+0.1
2,834,596	+		GFF2798	0.78	-0.1
2,834,598	-		GFF2798	0.78	-0.1
2,834,604	-		GFF2798	0.79	-0.9
2,834,604	-		GFF2798	0.79	+0.5
2,834,642	+		GFF2798	0.84	-1.2
2,834,647	+		GFF2798	0.85	-0.7
2,834,666	+		GFF2798	0.88	+0.1
2,834,666	+		GFF2798	0.88	+0.0
2,834,666	+		GFF2798	0.88	-0.3
2,834,666	+		GFF2798	0.88	-0.1
2,834,674	-		GFF2798	0.89	-0.9
2,834,674	-		GFF2798	0.89	+0.4
2,834,674	-		GFF2798	0.89	-1.0
2,834,674	-		GFF2798	0.89	-1.4
2,834,674	-		GFF2798	0.89	+0.1
2,834,703	-				-0.2
2,834,709	+				+0.2
2,834,709	+				-0.9
2,834,709	+				-0.9
2,834,717	-				-2.8
2,834,717	-				-0.4
2,834,717	-				-0.4
2,834,717	-				+0.0
2,834,717	-				-0.2
2,834,738	+				+0.3
2,834,746	-				-0.5
2,834,750	+				+0.6
2,834,751	+				-0.2
2,834,751	+				+0.4
2,834,751	+				+0.4
2,834,757	+				-0.5
2,834,757	+				-0.4
2,834,757	+				+1.3
2,834,757	+				-0.6
2,834,757	+				-0.4
2,834,757	+				-0.2
2,834,757	+				+0.6
2,834,757	+				-0.2
2,834,764	-				-1.1
2,834,765	-				-1.6
2,834,765	-				-0.4
2,834,765	-				-1.6
2,834,765	-				-0.4
2,834,765	-				-1.2
2,834,765	-				+0.4
2,834,765	-				-0.0
2,834,765	-				+1.2
2,834,765	-				-0.8
2,834,765	-				-1.9
2,834,765	-				-0.9
2,834,765	-				+0.0
2,834,765	-				-1.7
2,834,765	-				-1.9
2,834,765	-				-0.4
2,834,765	-				+0.1
2,834,767	+				-0.5
2,834,767	+				+0.0
2,834,770	+				-1.2
2,834,770	-				-0.0
2,834,775	-				+1.4
2,834,775	-				-0.4
2,834,792	+				+0.5
2,834,827	-				-0.2
2,834,831	+				-0.2
2,834,839	-				-0.7
2,834,844	-				-1.6
2,834,899	+				+1.2
2,834,912	+				+1.0
2,834,914	-				+1.3
2,834,919	+				+0.6
2,834,920	-				-0.9
2,834,942	+				+0.5
2,834,944	+				+1.0
2,834,944	+				-0.1
2,834,944	+				-2.9
2,834,950	-				+0.2
2,834,950	-				+0.9
2,834,952	-				-0.2
2,834,952	-				+1.1
2,834,957	-				-0.2
2,834,957	-				-0.0
2,834,957	-				-1.8
2,834,974	+				-0.8
2,835,001	+		GFF2799	0.13	+0.1
2,835,040	-		GFF2799	0.26	+0.2
2,835,055	+		GFF2799	0.30	-0.3
2,835,067	+		GFF2799	0.34	-1.9
2,835,072	+		GFF2799	0.36	-0.2
2,835,072	+		GFF2799	0.36	-0.2
2,835,072	+		GFF2799	0.36	-0.6
2,835,075	-		GFF2799	0.37	-0.3
2,835,076	+		GFF2799	0.37	+1.2
2,835,093	+		GFF2799	0.43	-1.7
2,835,096	+		GFF2799	0.44	+0.5
2,835,101	-		GFF2799	0.45	-0.4
2,835,115	+		GFF2799	0.50	-0.4
2,835,122	-		GFF2799	0.52	-1.4
2,835,149	+		GFF2799	0.61	+1.0
2,835,149	+		GFF2799	0.61	-0.8
2,835,149	+		GFF2799	0.61	-2.0
2,835,152	-		GFF2799	0.62	+0.0
2,835,157	-		GFF2799	0.63	-0.4
2,835,165	+		GFF2799	0.66	-0.4
2,835,168	+		GFF2799	0.67	-0.4
2,835,185	+		GFF2799	0.72	-0.2
2,835,207	+		GFF2799	0.80	-1.7
2,835,209	+		GFF2799	0.80	-0.9
2,835,215	-		GFF2799	0.82	+0.2
2,835,230	+		GFF2799	0.87	-0.8
2,835,230	+		GFF2799	0.87	+1.2
2,835,238	-		GFF2799	0.90	-0.3
2,835,248	-				-1.2
2,835,251	-				-0.9
2,835,261	-				+0.2
2,835,293	+				+1.0
2,835,293	+				-0.1
2,835,293	+				-2.2
2,835,301	-				-1.8
2,835,301	-				+0.2
2,835,314	+				-0.1
2,835,316	+				+0.2
2,835,358	-		GFF2800	0.14	-0.5
2,835,380	+		GFF2800	0.17	-0.3
2,835,384	+		GFF2800	0.18	-0.3
2,835,384	+		GFF2800	0.18	-0.6
2,835,384	+		GFF2800	0.18	+1.0
2,835,392	-		GFF2800	0.19	-0.3
2,835,392	-		GFF2800	0.19	-0.1
2,835,392	-		GFF2800	0.19	+0.6
2,835,393	+		GFF2800	0.19	-1.1
2,835,397	+		GFF2800	0.19	-1.6
2,835,397	+		GFF2800	0.19	+1.1
2,835,404	+		GFF2800	0.21	+0.4
2,835,406	-		GFF2800	0.21	-1.4
2,835,406	-		GFF2800	0.21	-1.5
2,835,406	-		GFF2800	0.21	+0.2
2,835,407	+		GFF2800	0.21	+0.2
2,835,415	-		GFF2800	0.22	+0.1
2,835,433	+		GFF2800	0.25	-1.0
2,835,435	+		GFF2800	0.25	-0.6
2,835,441	-		GFF2800	0.26	-0.1
2,835,442	-		GFF2800	0.26	+0.0
2,835,445	+		GFF2800	0.27	-1.6
2,835,450	+		GFF2800	0.28	-0.6
2,835,465	+		GFF2800	0.30	+0.0
2,835,465	+		GFF2800	0.30	-1.2
2,835,470	+		GFF2800	0.31	-0.6
2,835,483	-		GFF2800	0.33	-1.1
2,835,497	+		GFF2800	0.35	-0.5
2,835,497	+		GFF2800	0.35	-0.4
2,835,505	-		GFF2800	0.36	-1.2
2,835,505	-		GFF2800	0.36	-0.3
2,835,505	-		GFF2800	0.36	-1.5
2,835,516	+		GFF2800	0.38	+0.6
2,835,571	-		GFF2800	0.46	+1.0
2,835,590	+		GFF2800	0.49	-1.5
2,835,590	+		GFF2800	0.49	-1.5
2,835,595	+		GFF2800	0.50	-2.5
2,835,595	+		GFF2800	0.50	+0.3
2,835,600	+		GFF2800	0.50	-0.4
2,835,603	-		GFF2800	0.51	-0.9
2,835,603	-		GFF2800	0.51	+0.7
2,835,603	-		GFF2800	0.51	-1.0
2,835,603	-		GFF2800	0.51	-2.1
2,835,608	-		GFF2800	0.52	-0.2
2,835,608	-		GFF2800	0.52	-0.3
2,835,644	-		GFF2800	0.57	-0.2
2,835,673	+		GFF2800	0.61	-0.8
2,835,673	+		GFF2800	0.61	-1.1
2,835,676	-		GFF2800	0.62	-0.2
2,835,681	-		GFF2800	0.63	-1.8
2,835,698	+		GFF2800	0.65	+0.5
2,835,712	-		GFF2800	0.67	+1.5
2,835,712	-		GFF2800	0.67	-0.0
2,835,713	-		GFF2800	0.68	-0.5
2,835,718	+		GFF2800	0.68	-0.5
2,835,732	+		GFF2800	0.70	+1.0
2,835,732	+		GFF2800	0.70	+0.1
2,835,748	-		GFF2800	0.73	+1.2
2,835,749	+		GFF2800	0.73	-1.3
2,835,757	-		GFF2800	0.74	-0.1
2,835,757	-		GFF2800	0.74	+0.1
2,835,757	-		GFF2800	0.74	+0.1