Strain Fitness in Sphingobium sp. HT1-2 around GFF2789

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,821,605	-				-0.6
2,821,608	+				-1.1
2,821,622	+				+0.9
2,821,625	-				-0.7
2,821,627	+				-3.2
2,821,630	-				+1.0
2,821,630	-				-1.3
2,821,684	-		GFF2787	0.22	-0.6
2,821,689	-		GFF2787	0.24	-0.3
2,821,707	-		GFF2787	0.30	+1.3
2,821,708	+		GFF2787	0.30	-1.6
2,821,708	+		GFF2787	0.30	-1.0
2,821,714	+		GFF2787	0.32	-1.0
2,821,716	-		GFF2787	0.33	+1.0
2,821,727	-		GFF2787	0.37	-0.7
2,821,737	+		GFF2787	0.40	-1.8
2,821,738	+		GFF2787	0.40	+0.1
2,821,832	+		GFF2787	0.72	-0.7
2,821,832	+		GFF2787	0.72	-0.3
2,821,832	+		GFF2787	0.72	-2.1
2,821,832	+		GFF2787	0.72	-0.6
2,821,832	+		GFF2787	0.72	-1.2
2,821,840	-		GFF2787	0.75	-0.6
2,821,848	-		GFF2787	0.78	+1.1
2,821,865	-		GFF2787	0.84	+0.1
2,821,879	+		GFF2787	0.88	-2.0
2,821,887	-				-0.9
2,821,887	-				-0.0
2,821,890	+				-0.1
2,821,890	+				-1.1
2,821,898	-				-0.1
2,821,902	-				-0.4
2,821,902	-				+0.9
2,821,902	-				-0.2
2,821,909	-				-1.0
2,821,910	-				-0.5
2,821,910	-				+1.2
2,821,918	+				-0.3
2,821,918	+				-1.9
2,821,926	-				+0.4
2,821,926	-				-1.2
2,821,966	-				-1.3
2,821,970	+				-2.9
2,821,970	+				+0.0
2,821,970	+				+0.8
2,821,970	+				+0.2
2,821,970	+				+0.2
2,821,970	+				-0.3
2,821,970	+				-0.2
2,821,978	-				+0.0
2,821,978	-				-1.6
2,821,978	-				-1.0
2,821,978	-				-2.5
2,822,006	-				+0.3
2,822,039	-				-0.0
2,822,044	+				+0.1
2,822,048	-				+0.2
2,822,049	+				-1.0
2,822,124	+				-2.0
2,822,124	+				-1.1
2,822,127	+		GFF2788	0.10	-0.5
2,822,132	-		GFF2788	0.11	+0.6
2,822,145	+		GFF2788	0.14	-0.5
2,822,154	-		GFF2788	0.16	-0.3
2,822,159	-		GFF2788	0.16	-0.3
2,822,194	-		GFF2788	0.23	+0.4
2,822,194	-		GFF2788	0.23	+1.4
2,822,217	-		GFF2788	0.28	+0.8
2,822,271	+		GFF2788	0.38	-0.7
2,822,283	+		GFF2788	0.40	+0.2
2,822,291	-		GFF2788	0.42	-0.1
2,822,291	-		GFF2788	0.42	-1.1
2,822,291	-		GFF2788	0.42	+0.5
2,822,291	-		GFF2788	0.42	-0.4
2,822,291	-		GFF2788	0.42	-0.9
2,822,305	+		GFF2788	0.44	-0.2
2,822,313	-		GFF2788	0.46	-1.3
2,822,348	-		GFF2788	0.53	+0.1
2,822,358	-		GFF2788	0.55	-0.4
2,822,365	+		GFF2788	0.56	-0.1
2,822,365	+		GFF2788	0.56	-0.7
2,822,365	+		GFF2788	0.56	-0.1
2,822,370	+		GFF2788	0.57	+0.1
2,822,370	+		GFF2788	0.57	+0.6
2,822,370	+		GFF2788	0.57	-1.2
2,822,370	+		GFF2788	0.57	-0.5
2,822,370	+		GFF2788	0.57	+0.2
2,822,370	+		GFF2788	0.57	+0.2
2,822,373	-		GFF2788	0.57	-1.2
2,822,373	-		GFF2788	0.57	+1.0
2,822,373	-		GFF2788	0.57	-2.3
2,822,378	-		GFF2788	0.58	-1.2
2,822,378	-		GFF2788	0.58	-1.8
2,822,407	+		GFF2788	0.64	-0.2
2,822,410	-		GFF2788	0.65	-0.9
2,822,420	-		GFF2788	0.66	-0.2
2,822,431	-		GFF2788	0.69	-1.6
2,822,447	+		GFF2788	0.72	-1.2
2,822,455	-		GFF2788	0.73	-0.5
2,822,455	-		GFF2788	0.73	-1.3
2,822,462	-		GFF2788	0.75	+1.3
2,822,467	-		GFF2788	0.75	-0.2
2,822,469	-		GFF2788	0.76	+0.2
2,822,477	+		GFF2788	0.77	-1.3
2,822,479	+		GFF2788	0.78	+0.2
2,822,505	+		GFF2788	0.83	-1.9
2,822,536	+		GFF2788	0.89	+1.1
2,822,536	+		GFF2788	0.89	+0.2
2,822,544	-				+1.0
2,822,544	-				+0.9
2,822,544	-				+0.0
2,822,702	+		GFF2789	0.11	-1.9
2,822,702	+		GFF2789	0.11	-1.4
2,822,702	+		GFF2789	0.11	-1.2
2,822,710	-		GFF2789	0.12	-3.7
2,822,710	-		GFF2789	0.12	-1.5
2,822,710	-		GFF2789	0.12	-2.7
2,822,710	-		GFF2789	0.12	-0.2
2,822,731	-		GFF2789	0.14	-1.5
2,822,773	-		GFF2789	0.19	-2.1
2,822,778	-		GFF2789	0.19	-3.1
2,822,783	-		GFF2789	0.20	-3.8
2,822,811	+		GFF2789	0.23	-1.0
2,822,839	+		GFF2789	0.26	-1.4
2,822,848	+		GFF2789	0.27	-2.7
2,822,856	-		GFF2789	0.28	-2.2
2,822,900	-		GFF2789	0.32	-2.9
2,822,919	-		GFF2789	0.34	-1.2
2,822,947	-		GFF2789	0.37	-2.4
2,822,954	-		GFF2789	0.38	-1.6
2,822,959	+		GFF2789	0.39	-1.4
2,822,964	+		GFF2789	0.39	-2.3
2,822,964	+		GFF2789	0.39	-2.9
2,822,982	-		GFF2789	0.41	-1.4
2,823,011	-		GFF2789	0.44	-1.8
2,823,026	+		GFF2789	0.46	-1.8
2,823,034	-		GFF2789	0.47	-1.2
2,823,039	-		GFF2789	0.47	-1.2
2,823,082	-		GFF2789	0.52	-1.9
2,823,097	+		GFF2789	0.54	-2.9
2,823,097	+		GFF2789	0.54	-2.2
2,823,105	-		GFF2789	0.55	-3.0
2,823,105	-		GFF2789	0.55	-1.7
2,823,105	-		GFF2789	0.55	-3.2
2,823,105	-		GFF2789	0.55	-2.5
2,823,105	-		GFF2789	0.55	-3.3
2,823,229	+		GFF2789	0.68	-2.2
2,823,230	+		GFF2789	0.68	-2.2
2,823,237	-		GFF2789	0.69	-2.2
2,823,282	-		GFF2789	0.74	-2.7
2,823,324	-		GFF2789	0.79	-2.6
2,823,330	+		GFF2789	0.79	-2.5
2,823,338	-		GFF2789	0.80	-3.2
2,823,338	-		GFF2789	0.80	-2.2
2,823,338	-		GFF2789	0.80	-2.4
2,823,338	-		GFF2789	0.80	-4.3
2,823,341	+		GFF2789	0.80	-1.4
2,823,359	+		GFF2789	0.82	-2.3
2,823,377	-		GFF2789	0.84	-2.0
2,823,381	+		GFF2789	0.85	-2.5
2,823,383	-		GFF2789	0.85	-1.1
2,823,389	-		GFF2789	0.86	-4.0
2,823,413	+		GFF2789	0.88	-1.4
2,823,416	-		GFF2789	0.89	-0.5
2,823,421	-		GFF2789	0.89	-1.8
2,823,421	-		GFF2789	0.89	-3.8
2,823,422	-		GFF2789	0.89	-1.9
2,823,433	+				-1.9
2,823,433	+				-2.7
2,823,433	+				-1.2
2,823,435	+				-2.6
2,823,435	+				-3.1
2,823,435	+				-1.8
2,823,435	+				-2.3
2,823,435	+				-1.2
2,823,435	+				-2.7
2,823,435	+				-2.5
2,823,435	+				-1.5
2,823,435	+				-2.4
2,823,435	+				-2.2
2,823,435	+				-1.1
2,823,436	-				-1.9
2,823,440	+				+0.4
2,823,441	-				-1.8
2,823,441	-				-2.5
2,823,441	-				-3.9
2,823,441	-				-2.0
2,823,441	-				-1.9
2,823,443	-				-1.7
2,823,443	-				-2.5
2,823,443	-				-3.4
2,823,443	-				-3.5
2,823,443	-				-1.8
2,823,443	-				-2.2
2,823,443	-				-0.2
2,823,448	-				-1.6
2,823,458	+				-0.9
2,823,459	+				-1.7
2,823,459	+				-3.5
2,823,459	+				-2.5
2,823,466	-				-0.2
2,823,467	-				-1.2
2,823,476	-				-1.2
2,823,483	+				-1.2
2,823,503	+				-3.2
2,823,511	-				+0.6
2,823,523	+				-2.1
2,823,523	+				-2.1
2,823,531	-				-1.8
2,823,531	-				-0.0
2,823,531	-				-1.1
2,823,531	-				-2.1
2,823,585	+				-1.9
2,823,586	-				-2.3
2,823,593	-				-1.4
2,823,593	-				+0.4
2,823,596	+				+0.1
2,823,602	+				+1.2
2,823,604	-				-1.3
2,823,607	+				-0.7
2,823,612	+		GFF2790	0.10	-0.8
2,823,620	-		GFF2790	0.12	+0.1
2,823,640	+		GFF2790	0.15	-0.5
2,823,648	-		GFF2790	0.16	+0.1
2,823,682	+		GFF2790	0.21	+0.9
2,823,695	-		GFF2790	0.24	-1.6
2,823,708	+		GFF2790	0.26	+0.1
2,823,718	+		GFF2790	0.27	-0.1
2,823,718	+		GFF2790	0.27	-0.4
2,823,721	-		GFF2790	0.28	-1.5
2,823,753	+		GFF2790	0.33	-2.3
2,823,760	+		GFF2790	0.34	+0.6
2,823,761	-		GFF2790	0.34	-2.9
2,823,761	-		GFF2790	0.34	-2.2
2,823,761	-		GFF2790	0.34	+0.3
2,823,761	-		GFF2790	0.34	-1.2
2,823,770	+		GFF2790	0.35	+0.4
2,823,786	+		GFF2790	0.38	-1.2
2,823,786	+		GFF2790	0.38	-1.7
2,823,788	+		GFF2790	0.38	-0.9
2,823,788	+		GFF2790	0.38	-0.5
2,823,788	+		GFF2790	0.38	-1.9
2,823,788	+		GFF2790	0.38	-0.2
2,823,788	+		GFF2790	0.38	-0.6
2,823,788	+		GFF2790	0.38	+0.4
2,823,788	-		GFF2790	0.38	+1.5
2,823,796	-		GFF2790	0.39	-2.0
2,823,796	-		GFF2790	0.39	-1.2
2,823,796	-		GFF2790	0.39	-1.0
2,823,796	-		GFF2790	0.39	+1.0
2,823,813	-		GFF2790	0.42	-0.7
2,823,833	-		GFF2790	0.45	-1.4
2,823,850	-		GFF2790	0.48	-1.7
2,823,869	-		GFF2790	0.51	+0.2
2,823,875	-		GFF2790	0.52	-0.2
2,823,913	-		GFF2790	0.58	-0.4
2,823,919	+		GFF2790	0.59	+1.3
2,823,923	-		GFF2790	0.60	-0.2
2,823,927	-		GFF2790	0.60	-2.0
2,823,927	-		GFF2790	0.60	+0.1
2,823,931	-		GFF2790	0.61	+0.1
2,823,934	+		GFF2790	0.61	+1.3
2,823,955	+		GFF2790	0.65	-1.4
2,823,998	+		GFF2790	0.71	+0.9
2,823,998	+		GFF2790	0.71	+0.8
2,823,998	-		GFF2790	0.71	-2.3
2,824,001	-		GFF2790	0.72	-0.9
2,824,006	-		GFF2790	0.73	+0.8
2,824,006	-		GFF2790	0.73	+0.3
2,824,006	-		GFF2790	0.73	+1.3
2,824,006	-		GFF2790	0.73	-1.7
2,824,058	-		GFF2790	0.81	+0.1
2,824,067	+		GFF2790	0.82	-1.5
2,824,067	+		GFF2790	0.82	-0.5
2,824,067	+		GFF2790	0.82	-0.7
2,824,075	-		GFF2790	0.84	-1.9
2,824,075	-		GFF2790	0.84	-1.2
2,824,082	+		GFF2790	0.85	+0.5
2,824,082	+		GFF2790	0.85	+1.1
2,824,082	+		GFF2790	0.85	+0.8
2,824,090	-		GFF2790	0.86	+0.0
2,824,090	-		GFF2790	0.86	+0.5
2,824,090	-		GFF2790	0.86	-0.0
2,824,090	-		GFF2790	0.86	-0.0
2,824,102	+		GFF2790	0.88	-1.8
2,824,105	+		GFF2790	0.88	+1.1
2,824,113	-		GFF2790	0.90	+0.9
2,824,137	+				-1.8
2,824,152	+				-0.5
2,824,160	-				-1.1
2,824,160	-				-0.6
2,824,160	-				-0.6
2,824,165	+				-0.7
2,824,174	-				+0.2
2,824,174	-				+0.0
2,824,179	+				-0.4
2,824,182	-				+0.6
2,824,187	-				-0.5
2,824,192	-				-0.1
2,824,216	-				-2.5
2,824,218	+				-0.7
2,824,222	+				-0.2
2,824,223	+				-0.2
2,824,226	+				-0.3
2,824,227	+				+0.0
2,824,227	+				-2.2
2,824,232	+				+0.6
2,824,232	+				-1.1
2,824,235	-				+0.8
2,824,235	-				-0.1
2,824,235	-				-1.2
2,824,236	-				+1.0
2,824,240	-				-1.2
2,824,248	+				+0.4
2,824,250	+				+0.9
2,824,256	-				-0.3
2,824,258	+				-0.6
2,824,258	+				-0.2
2,824,258	+				+0.3
2,824,260	+				-2.0
2,824,285	+				-1.9
2,824,293	-				+0.2
2,824,293	-				-0.2
2,824,295	+				-2.1
2,824,297	+				+0.5
2,824,304	+				+0.6
2,824,307	+				+0.9
2,824,307	+				+0.3
2,824,328	+				-1.3
2,824,328	+				+0.1
2,824,333	+				-1.6
2,824,333	+				-0.4
2,824,333	+				-1.5
2,824,341	-				-1.0
2,824,341	-				-1.0
2,824,341	-				-0.7
2,824,355	+				+0.4
2,824,357	+				+1.0
2,824,403	+				+0.9
2,824,403	+				-0.9
2,824,407	+				+1.3
2,824,407	+				+0.5
2,824,407	+				-0.4
2,824,450	-				-0.5
2,824,457	+				+0.0
2,824,457	+				-0.6
2,824,457	+				-0.7
2,824,465	-				+0.5
2,824,480	+		GFF2791	0.10	-2.4
2,824,480	+		GFF2791	0.10	-0.8
2,824,499	+		GFF2791	0.11	+1.0
2,824,502	+		GFF2791	0.11	-1.9
2,824,502	+		GFF2791	0.11	+1.0
2,824,503	+		GFF2791	0.11	-1.6
2,824,505	-		GFF2791	0.12	-0.6
2,824,510	-		GFF2791	0.12	-0.6
2,824,510	-		GFF2791	0.12	-2.2
2,824,519	-		GFF2791	0.12	+0.1