Strain Fitness in Sphingobium sp. HT1-2 around GFF2780

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,814,511	+		GFF2778	0.60	-0.6
2,814,513	+		GFF2778	0.60	+0.2
2,814,528	+		GFF2778	0.62	+0.9
2,814,537	-		GFF2778	0.63	+0.1
2,814,547	-		GFF2778	0.64	-0.5
2,814,554	+		GFF2778	0.64	-0.1
2,814,554	+		GFF2778	0.64	-1.2
2,814,554	+		GFF2778	0.64	-0.3
2,814,554	+		GFF2778	0.64	-0.7
2,814,554	+		GFF2778	0.64	+0.4
2,814,554	+		GFF2778	0.64	+0.1
2,814,554	+		GFF2778	0.64	-1.7
2,814,554	+		GFF2778	0.64	+1.4
2,814,562	-		GFF2778	0.65	+0.3
2,814,562	-		GFF2778	0.65	+0.1
2,814,562	-		GFF2778	0.65	+0.0
2,814,562	-		GFF2778	0.65	-0.3
2,814,562	-		GFF2778	0.65	-1.0
2,814,562	-		GFF2778	0.65	-1.3
2,814,562	-		GFF2778	0.65	+1.1
2,814,567	-		GFF2778	0.66	+0.1
2,814,626	+		GFF2778	0.72	-0.8
2,814,634	-		GFF2778	0.73	+0.1
2,814,644	+		GFF2778	0.74	-0.5
2,814,644	+		GFF2778	0.74	-0.6
2,814,652	-		GFF2778	0.74	-0.6
2,814,661	+		GFF2778	0.75	-0.4
2,814,667	+		GFF2778	0.76	+0.2
2,814,667	+		GFF2778	0.76	-1.3
2,814,672	+		GFF2778	0.77	-0.1
2,814,673	-		GFF2778	0.77	-0.2
2,814,675	-		GFF2778	0.77	+0.2
2,814,675	-		GFF2778	0.77	-0.7
2,814,675	-		GFF2778	0.77	-0.2
2,814,681	+		GFF2778	0.77	-0.6
2,814,697	+		GFF2778	0.79	+0.1
2,814,697	+		GFF2778	0.79	+1.0
2,814,697	+		GFF2778	0.79	+0.2
2,814,697	+		GFF2778	0.79	-2.5
2,814,697	+		GFF2778	0.79	-0.9
2,814,697	+		GFF2778	0.79	-2.3
2,814,705	-		GFF2778	0.80	-0.3
2,814,705	-		GFF2778	0.80	+0.0
2,814,705	-		GFF2778	0.80	-0.9
2,814,705	-		GFF2778	0.80	+0.4
2,814,705	-		GFF2778	0.80	-1.3
2,814,705	-		GFF2778	0.80	-0.6
2,814,705	-		GFF2778	0.80	-0.7
2,814,705	-		GFF2778	0.80	-0.0
2,814,725	-		GFF2778	0.82	+0.6
2,814,726	+		GFF2778	0.82	-2.2
2,814,726	+		GFF2778	0.82	-1.5
2,814,726	+		GFF2778	0.82	+0.5
2,814,726	+		GFF2778	0.82	-0.5
2,814,726	+		GFF2778	0.82	+0.5
2,814,729	-		GFF2778	0.82	-1.0
2,814,734	-		GFF2778	0.83	+0.1
2,814,734	-		GFF2778	0.83	-1.1
2,814,734	-		GFF2778	0.83	+1.2
2,814,734	-		GFF2778	0.83	-0.7
2,814,734	-		GFF2778	0.83	-2.4
2,814,734	-		GFF2778	0.83	-0.8
2,814,760	+		GFF2778	0.86	+0.1
2,814,760	+		GFF2778	0.86	-0.4
2,814,767	+		GFF2778	0.86	-0.8
2,814,768	-		GFF2778	0.87	+0.1
2,814,803	+				+1.7
2,814,803	+				-0.3
2,814,803	-				-1.3
2,814,811	-				-0.6
2,814,823	+				+1.0
2,814,825	+				-0.7
2,814,847	-				-1.9
2,814,847	-				-1.5
2,814,875	-				-0.6
2,814,915	+				+0.1
2,814,923	-				-1.1
2,814,932	+				-0.4
2,814,940	-				-1.3
2,814,944	+				-0.9
2,814,957	+				+0.2
2,814,965	-				-2.0
2,814,965	-				-0.6
2,814,984	+				-2.5
2,814,990	+				-0.6
2,814,993	+				+0.6
2,814,995	+				+0.1
2,814,995	+				+0.4
2,814,995	+				+0.2
2,814,995	+				+0.1
2,814,995	+				-2.0
2,814,995	+				-0.8
2,814,995	+				+0.7
2,814,995	+				-1.6
2,814,995	+				-0.7
2,814,995	+				-1.5
2,814,995	+				-1.9
2,814,995	+				-0.6
2,814,995	+				-0.3
2,814,995	+				+0.6
2,814,995	+				-0.2
2,814,995	+				-1.6
2,814,995	+				+0.3
2,814,995	+				-1.3
2,814,995	+				-0.0
2,814,995	+				+0.7
2,814,995	+				+1.1
2,814,995	+				-0.0
2,814,995	+				-1.2
2,814,995	+				-0.6
2,814,995	+				-0.6
2,814,995	+				-0.2
2,814,995	+				-1.2
2,814,995	+				-1.6
2,814,995	+				-0.5
2,814,995	+				+0.7
2,814,995	+				-0.1
2,814,996	+				+0.4
2,815,003	-				+0.1
2,815,003	-				+0.8
2,815,003	-				-0.8
2,815,003	-				+0.7
2,815,003	-				+0.4
2,815,003	-				+0.5
2,815,003	-				-2.2
2,815,003	-				-0.5
2,815,003	-				-1.2
2,815,003	-				+0.8
2,815,003	-				-1.7
2,815,003	-				-0.3
2,815,003	-				-1.2
2,815,003	-				-0.0
2,815,003	-				-0.1
2,815,003	-				+0.9
2,815,003	-				+0.7
2,815,003	-				-0.5
2,815,003	-				-0.6
2,815,003	-				-1.3
2,815,003	-				+0.6
2,815,003	-				+0.1
2,815,003	-				-0.8
2,815,003	-				-1.6
2,815,003	-				+0.5
2,815,003	-				+0.9
2,815,003	-				+0.6
2,815,003	-				-0.2
2,815,003	-				+0.4
2,815,003	-				+1.0
2,815,003	-				-0.0
2,815,003	-				-0.6
2,815,003	-				+0.4
2,815,003	-				+0.7
2,815,003	-				-1.2
2,815,008	-				+0.4
2,815,028	+				-0.5
2,815,033	+				-1.5
2,815,033	+				-1.1
2,815,033	+				-0.1
2,815,036	-				-1.0
2,815,036	-				-2.2
2,815,041	-				+0.1
2,815,041	-				+0.3
2,815,041	-				-1.1
2,815,046	+				-0.8
2,815,046	+				-0.9
2,815,046	+				-0.0
2,815,046	+				+0.5
2,815,052	-				-1.9
2,815,054	-				+1.3
2,815,054	-				-0.1
2,815,054	-				-0.8
2,815,057	+				-1.7
2,815,057	+				-1.7
2,815,057	+				-0.2
2,815,065	-				-0.3
2,815,065	-				-0.9
2,815,086	+				-1.1
2,815,091	+				+1.9
2,815,091	+				-1.3
2,815,094	-				-1.1
2,815,099	-				+0.4
2,815,134	-		GFF2779	0.16	+0.7
2,815,134	-		GFF2779	0.16	-1.4
2,815,134	-		GFF2779	0.16	-0.7
2,815,134	-		GFF2779	0.16	+0.1
2,815,144	-		GFF2779	0.18	-0.1
2,815,148	-		GFF2779	0.19	+0.2
2,815,158	+		GFF2779	0.22	-1.0
2,815,158	-		GFF2779	0.22	-0.1
2,815,174	+		GFF2779	0.25	+0.0
2,815,174	+		GFF2779	0.25	-1.1
2,815,174	+		GFF2779	0.25	+0.7
2,815,204	+		GFF2779	0.32	+1.4
2,815,206	+		GFF2779	0.33	+0.4
2,815,206	+		GFF2779	0.33	+0.2
2,815,206	+		GFF2779	0.33	-0.3
2,815,209	+		GFF2779	0.34	+1.2
2,815,211	+		GFF2779	0.34	+1.3
2,815,211	+		GFF2779	0.34	+0.3
2,815,211	+		GFF2779	0.34	-0.4
2,815,211	+		GFF2779	0.34	-1.3
2,815,211	+		GFF2779	0.34	-1.3
2,815,214	-		GFF2779	0.35	+0.0
2,815,214	-		GFF2779	0.35	-0.5
2,815,214	-		GFF2779	0.35	+0.1
2,815,214	-		GFF2779	0.35	-1.1
2,815,214	-		GFF2779	0.35	+1.6
2,815,214	-		GFF2779	0.35	-2.3
2,815,219	-		GFF2779	0.36	-0.8
2,815,219	-		GFF2779	0.36	-0.4
2,815,249	-		GFF2779	0.43	-0.3
2,815,266	+		GFF2779	0.47	+0.4
2,815,266	+		GFF2779	0.47	+0.3
2,815,285	+		GFF2779	0.51	-0.3
2,815,290	+		GFF2779	0.52	+0.4
2,815,323	+		GFF2779	0.60	-0.1
2,815,323	+		GFF2779	0.60	+0.4
2,815,326	-		GFF2779	0.61	-0.2
2,815,331	-		GFF2779	0.62	-0.9
2,815,333	+		GFF2779	0.62	-0.4
2,815,333	+		GFF2779	0.62	-0.6
2,815,333	+		GFF2779	0.62	+1.2
2,815,333	+		GFF2779	0.62	-1.3
2,815,341	-		GFF2779	0.64	-0.3
2,815,341	-		GFF2779	0.64	-0.8
2,815,341	-		GFF2779	0.64	-0.1
2,815,341	-		GFF2779	0.64	-0.3
2,815,341	-		GFF2779	0.64	+0.7
2,815,341	-		GFF2779	0.64	-0.5
2,815,363	+		GFF2779	0.69	+1.0
2,815,363	+		GFF2779	0.69	+0.3
2,815,383	-		GFF2779	0.74	+0.1
2,815,395	-		GFF2779	0.77	-0.2
2,815,400	+		GFF2779	0.78	-0.5
2,815,406	+		GFF2779	0.79	-0.3
2,815,406	+		GFF2779	0.79	+1.0
2,815,406	+		GFF2779	0.79	-1.3
2,815,406	+		GFF2779	0.79	-1.5
2,815,414	-		GFF2779	0.81	-1.7
2,815,421	+		GFF2779	0.83	+0.7
2,815,421	-		GFF2779	0.83	+0.0
2,815,437	+		GFF2779	0.87	-0.4
2,815,440	-		GFF2779	0.87	-0.2
2,815,469	+				-1.3
2,815,477	-				-2.3
2,815,480	+				-1.3
2,815,482	+				-0.5
2,815,490	-				+1.1
2,815,514	+				-2.7
2,815,514	+				-1.1
2,815,514	+				-0.8
2,815,514	+				-0.5
2,815,514	+				-0.6
2,815,514	+				+1.2
2,815,514	+				-0.1
2,815,516	+				-1.0
2,815,522	-				-2.2
2,815,522	-				+0.0
2,815,522	-				+0.2
2,815,522	-				+1.7
2,815,522	-				-1.1
2,815,522	-				+0.3
2,815,522	-				-1.0
2,815,522	-				+0.9
2,815,522	-				-1.5
2,815,522	-				-1.9
2,815,522	-				-0.6
2,815,532	-				-2.1
2,815,556	-				-2.4
2,815,575	+				+0.4
2,815,575	+				+0.2
2,815,585	+				+0.6
2,815,588	+		GFF2780	0.10	-0.9
2,815,594	+		GFF2780	0.11	+0.2
2,815,596	-		GFF2780	0.11	-0.4
2,815,601	+		GFF2780	0.12	+0.5
2,815,602	-		GFF2780	0.12	+0.3
2,815,617	+		GFF2780	0.14	-0.5
2,815,620	-		GFF2780	0.14	+1.1
2,815,642	+		GFF2780	0.17	+1.0
2,815,642	+		GFF2780	0.17	+0.5
2,815,644	-		GFF2780	0.17	+1.0
2,815,691	-		GFF2780	0.22	+0.2
2,815,693	+		GFF2780	0.22	+0.3
2,815,696	-		GFF2780	0.23	+1.1
2,815,696	-		GFF2780	0.23	+0.1
2,815,696	-		GFF2780	0.23	-0.5
2,815,696	-		GFF2780	0.23	-0.3
2,815,701	-		GFF2780	0.23	+0.2
2,815,705	+		GFF2780	0.24	-0.1
2,815,705	+		GFF2780	0.24	-1.3
2,815,705	+		GFF2780	0.24	+1.4
2,815,705	+		GFF2780	0.24	+0.9
2,815,705	+		GFF2780	0.24	+0.4
2,815,705	+		GFF2780	0.24	-0.6
2,815,713	-		GFF2780	0.25	+0.0
2,815,713	-		GFF2780	0.25	+0.1
2,815,713	-		GFF2780	0.25	-0.6
2,815,713	-		GFF2780	0.25	+0.8
2,815,713	-		GFF2780	0.25	+0.4
2,815,713	-		GFF2780	0.25	-2.2
2,815,713	-		GFF2780	0.25	-0.5
2,815,721	-		GFF2780	0.26	+0.5
2,815,721	-		GFF2780	0.26	-1.6
2,815,734	+		GFF2780	0.27	-0.8
2,815,742	-		GFF2780	0.28	-1.8
2,815,764	+		GFF2780	0.31	-1.6
2,815,774	+		GFF2780	0.32	-0.7
2,815,774	+		GFF2780	0.32	+1.0
2,815,774	+		GFF2780	0.32	-1.2
2,815,774	+		GFF2780	0.32	+0.4
2,815,774	+		GFF2780	0.32	+0.1
2,815,774	+		GFF2780	0.32	-0.9
2,815,774	+		GFF2780	0.32	-1.3
2,815,774	+		GFF2780	0.32	-0.2
2,815,782	-		GFF2780	0.33	+1.1
2,815,782	-		GFF2780	0.33	+1.1
2,815,782	-		GFF2780	0.33	-0.6
2,815,782	-		GFF2780	0.33	+0.2
2,815,782	-		GFF2780	0.33	-2.3
2,815,782	-		GFF2780	0.33	-0.1
2,815,782	-		GFF2780	0.33	+0.5
2,815,786	+		GFF2780	0.33	+0.4
2,815,799	+		GFF2780	0.35	+0.2
2,815,806	+		GFF2780	0.36	-0.9
2,815,807	-		GFF2780	0.36	-2.9
2,815,814	-		GFF2780	0.36	-0.6
2,815,821	+		GFF2780	0.37	-0.1
2,815,821	+		GFF2780	0.37	+1.6
2,815,829	-		GFF2780	0.38	+1.2
2,815,876	-		GFF2780	0.44	-0.2
2,815,882	+		GFF2780	0.44	-1.2
2,815,921	+		GFF2780	0.49	-2.5
2,815,929	-		GFF2780	0.50	-0.4
2,815,929	-		GFF2780	0.50	-0.2
2,815,929	-		GFF2780	0.50	+0.7
2,815,936	-		GFF2780	0.51	-0.9
2,815,986	+		GFF2780	0.56	+0.2
2,816,022	-		GFF2780	0.61	-0.3
2,816,030	+		GFF2780	0.61	-1.2
2,816,033	+		GFF2780	0.62	-1.2
2,816,046	-		GFF2780	0.63	+1.2
2,816,059	-		GFF2780	0.65	-2.2
2,816,072	+		GFF2780	0.66	-2.1
2,816,084	+		GFF2780	0.68	-0.1
2,816,084	+		GFF2780	0.68	+0.2
2,816,089	+		GFF2780	0.68	-0.1
2,816,129	-		GFF2780	0.73	-1.6
2,816,129	-		GFF2780	0.73	+0.1
2,816,131	+		GFF2780	0.73	-0.6
2,816,131	+		GFF2780	0.73	+1.7
2,816,131	+		GFF2780	0.73	-0.5
2,816,131	+		GFF2780	0.73	+0.2
2,816,131	+		GFF2780	0.73	-1.8
2,816,139	-		GFF2780	0.74	+0.7
2,816,139	-		GFF2780	0.74	-0.5
2,816,139	-		GFF2780	0.74	+0.6
2,816,141	+		GFF2780	0.74	+1.3
2,816,152	+		GFF2780	0.76	+0.6
2,816,152	-		GFF2780	0.76	-0.7
2,816,152	-		GFF2780	0.76	-0.8
2,816,152	-		GFF2780	0.76	-1.3
2,816,152	-		GFF2780	0.76	-0.5
2,816,179	+		GFF2780	0.79	-0.2
2,816,186	-		GFF2780	0.80	-0.1
2,816,187	-		GFF2780	0.80	+0.3
2,816,196	+		GFF2780	0.81	+0.4
2,816,203	-		GFF2780	0.81	+0.7
2,816,204	-		GFF2780	0.82	-0.7
2,816,204	-		GFF2780	0.82	-0.6
2,816,210	-		GFF2780	0.82	+0.7
2,816,219	-		GFF2780	0.83	+1.0
2,816,237	-		GFF2780	0.85	-0.1
2,816,244	+		GFF2780	0.86	-0.9
2,816,251	+		GFF2780	0.87	-1.3
2,816,251	-		GFF2780	0.87	-1.7
2,816,252	-		GFF2780	0.87	+0.6
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